Wall clock time and date at job start Mon Mar 30 2020 04:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 5 5 H 1.07997 * 119.99993 * 120.00064 * 4 2 1 6 6 C 1.37878 * 120.00443 * 300.00247 * 4 2 1 7 7 N 1.31521 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00505 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47440 * 89.99770 * 8 6 4 10 10 H 1.48499 * 109.47175 * 209.99848 * 8 6 4 11 11 H 1.48506 * 109.47058 * 329.99925 * 8 6 4 12 12 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 13 13 C 1.34784 * 119.99971 * 84.99732 * 12 2 1 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 2 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47651 * 40.00319 * 15 13 12 17 17 N 1.46907 * 109.46735 * 160.00100 * 15 13 12 18 18 C 1.52997 * 109.47423 * 279.99926 * 15 13 12 19 19 C 1.50699 * 109.47617 * 175.00152 * 18 15 13 20 20 C 1.38226 * 120.00229 * 269.73062 * 19 18 15 21 21 C 1.38233 * 120.00314 * 179.76303 * 20 19 18 22 22 C 1.38235 * 120.00001 * 0.50289 * 21 20 19 23 23 C 1.38243 * 119.99481 * 359.75270 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 28 28 H 0.96997 * 120.00122 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99984 * 264.99579 * 12 2 1 30 30 H 1.00891 * 110.99927 * 296.04530 * 17 15 13 31 31 H 1.00897 * 111.00006 * 60.00051 * 17 15 13 32 32 H 1.08998 * 109.47257 * 295.00300 * 18 15 13 33 33 H 1.08999 * 109.47106 * 54.99829 * 18 15 13 34 34 H 1.08005 * 120.00073 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.00682 * 180.23029 * 21 20 19 36 36 H 1.07993 * 120.00482 * 179.72123 * 22 21 20 37 37 H 1.08006 * 119.99469 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.99725 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7121 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8538 1.1574 -2.4128 15 6 2.6498 -0.7283 -3.5875 16 1 2.2156 -1.7270 -3.6336 17 7 2.2610 0.0303 -4.7840 18 6 4.1746 -0.8375 -3.5260 19 6 4.6674 -1.6538 -4.6930 20 6 4.8008 -3.0241 -4.5707 21 6 5.2482 -3.7735 -5.6427 22 6 5.5719 -3.1512 -6.8338 23 6 5.4435 -1.7801 -6.9545 24 6 4.9908 -1.0314 -5.8842 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 0.7094 1.1617 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 1.2574 0.0614 -4.8821 31 1 2.6515 0.9605 -4.7651 32 1 4.6123 0.1598 -3.5696 33 1 4.4669 -1.3221 -2.5944 34 1 4.5524 -3.5098 -3.6385 35 1 5.3489 -4.8446 -5.5483 36 1 5.9257 -3.7360 -7.6699 37 1 5.6968 -1.2938 -7.8850 38 1 4.8908 0.0398 -5.9784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:17 Heat of formation + Delta-G solvation = -49.028126 kcal Electronic energy + Delta-G solvation = -19217.428008 eV Core-core repulsion = 16250.939928 eV Total energy + Delta-G solvation = -2966.488080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99921 -39.87371 -36.97696 -36.02281 -34.32402 -32.54357 -31.62343 -31.04489 -28.58611 -27.36921 -25.28703 -23.30386 -22.75778 -21.76215 -21.04720 -19.04265 -17.82049 -17.44125 -17.30584 -16.93502 -16.37329 -15.84102 -15.70916 -15.42156 -14.96800 -14.74733 -14.37606 -14.11254 -13.77073 -13.68607 -13.53367 -13.01377 -12.92642 -12.80829 -12.72539 -12.38516 -12.28520 -12.13510 -11.88298 -11.70944 -11.15092 -11.13967 -10.62335 -9.79049 -9.77993 -9.63395 -9.44183 -8.19168 -6.37147 0.57248 0.66592 1.44532 1.44679 1.55572 1.73316 2.34337 2.61166 3.03938 3.11319 3.48923 3.84520 4.04709 4.14941 4.17647 4.30264 4.30896 4.43542 4.64729 4.71755 4.77142 4.87577 4.91732 4.95598 5.06514 5.26907 5.32072 5.40171 5.58720 5.65324 5.71124 5.75954 5.85393 5.87208 6.01753 6.07626 6.26874 6.39765 6.71037 6.92267 7.30262 7.50472 8.86946 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.004246 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.418587 B = 6593.067136 C = 7310.836696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.700 5.700 13 C 0.466 3.534 14 O -0.603 6.603 15 C 0.098 3.902 16 H 0.116 0.884 17 N -0.807 5.807 18 C -0.063 4.063 19 C -0.074 4.074 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.105 4.105 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.345 0.655 31 H 0.345 0.655 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -9.699 -15.913 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.348 5.348 13 C 0.251 3.749 14 O -0.485 6.485 15 C -0.018 4.018 16 H 0.134 0.866 17 N -0.334 5.334 18 C -0.102 4.102 19 C -0.074 4.074 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.123 4.123 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.049 -9.327 -16.221 20.369 hybrid contribution -0.488 0.496 1.796 1.926 sum 7.561 -8.831 -14.425 18.526 Atomic orbital electron populations 1.21888 0.98412 0.99419 0.99449 1.18334 0.91043 0.91864 0.82289 0.98622 1.21557 1.32555 1.13598 0.90776 0.90712 1.25816 0.94824 0.95575 1.02401 1.70056 1.37041 1.24010 1.24613 0.85342 0.77749 0.79271 0.77971 1.20360 1.21036 1.18220 1.46387 1.64346 1.14239 1.09835 1.22738 0.77701 0.87675 0.86804 1.90629 1.53557 1.18416 1.85901 1.21493 0.96784 0.98558 0.85009 0.86632 1.59230 1.16802 1.21887 1.35527 1.20474 0.91768 1.00408 0.97519 1.19584 0.98983 0.93924 0.94884 1.21286 1.00336 0.93314 0.99885 1.21376 0.99421 1.00703 0.93227 1.21425 1.00330 0.94948 0.98327 1.21385 0.99900 0.94589 0.99050 1.21109 0.98188 1.00246 0.92797 0.94059 0.91580 0.97098 0.92569 0.75985 0.84256 0.84211 0.91393 0.89629 0.85146 0.84418 0.84369 0.84736 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.82 2.56 44.24 0.11 13.93 16 3 H 0.00 -0.25 7.58 -2.38 -0.02 -0.27 16 4 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.43 16 8 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 12 N -0.70 -28.14 5.07 -446.11 -2.26 -30.40 16 13 C 0.47 17.71 7.03 87.65 0.62 18.33 16 14 O -0.60 -28.36 15.91 -3.01 -0.05 -28.41 16 15 C 0.10 2.64 3.14 44.17 0.14 2.78 16 16 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 17 N -0.81 -20.46 8.36 -171.80 -1.44 -21.89 16 18 C -0.06 -1.57 4.98 29.85 0.15 -1.42 16 19 C -0.07 -1.66 4.95 -19.87 -0.10 -1.76 16 20 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 21 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 24 C -0.11 -2.28 9.31 22.27 0.21 -2.07 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.41 13.60 8.54 -92.71 -0.79 12.81 16 30 H 0.34 8.61 9.06 -89.70 -0.81 7.80 16 31 H 0.34 9.22 8.58 -89.70 -0.77 8.45 16 32 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 34 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -65.73 323.39 0.58 -65.15 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.29 Total: 36.66 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 3.35 Total: -12.31 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.46 Total: -104.72 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.05 Total: -28.41 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.73 0.58 -65.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.121 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds