Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46958 * 2 1 4 4 C 1.46500 * 120.00021 * 269.99667 * 3 2 1 5 5 C 1.34773 * 120.00176 * 90.00149 * 3 2 1 6 6 O 1.21280 * 120.00129 * 359.97438 * 5 3 2 7 7 C 1.50707 * 120.00199 * 179.97438 * 5 3 2 8 8 N 1.46495 * 109.47011 * 179.97438 * 7 5 3 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 5 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.09002 * 109.47160 * 59.99544 * 1 2 3 24 24 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46994 * 300.00129 * 1 2 3 26 26 H 1.08996 * 109.46713 * 240.00088 * 2 1 3 27 27 H 1.09001 * 109.46675 * 119.99865 * 2 1 3 28 28 H 1.08999 * 109.47479 * 270.00165 * 4 3 2 29 29 H 1.09008 * 109.47147 * 30.00608 * 4 3 2 30 30 H 1.08998 * 109.47272 * 150.00079 * 4 3 2 31 31 H 1.08998 * 109.46728 * 60.00222 * 7 5 3 32 32 H 1.08993 * 109.46898 * 300.00224 * 7 5 3 33 33 H 0.96996 * 120.00438 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 35 35 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 36 36 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2430 2.0166 1.1671 6 8 2.0404 1.4450 2.2175 7 6 2.7458 3.4373 1.1672 8 7 2.9079 3.8979 2.5483 9 6 3.3628 5.1851 2.8020 10 6 3.6700 6.0353 1.7387 11 6 4.1118 7.3023 1.9804 12 6 4.2688 7.7488 3.3074 13 6 4.7317 9.0569 3.5652 14 1 4.4855 9.5428 4.4978 15 6 5.5092 9.7240 2.6131 16 7 6.0993 9.0481 1.6599 17 14 5.7057 11.5796 2.7015 18 1 6.9497 11.9109 3.4415 19 1 5.7847 12.1350 1.3266 20 1 4.5386 12.1678 3.4067 21 6 3.9623 6.8830 4.3758 22 6 3.5157 5.6206 4.1192 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2920 1.9006 -1.5834 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 2.0281 4.0766 0.6532 32 1 3.7061 3.4827 0.6535 33 1 2.6975 3.3038 3.2856 34 1 3.5537 5.6901 0.7220 35 1 4.3449 7.9607 1.1565 36 1 6.6382 9.5107 0.9993 37 1 4.0807 7.2186 5.3954 38 1 3.2807 4.9557 4.9372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = -10.647143 kcal Electronic energy + Delta-G solvation = -18945.004886 eV Core-core repulsion = 15980.181131 eV Total energy + Delta-G solvation = -2964.823755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04487 -37.82919 -36.04716 -34.79482 -32.94680 -31.59050 -29.45721 -29.12208 -27.07924 -26.59904 -24.15449 -22.99891 -21.16976 -20.09316 -19.08097 -17.39203 -17.19612 -16.54331 -15.90658 -15.49619 -14.93269 -14.68796 -13.96224 -13.88847 -13.78411 -13.24844 -12.89785 -12.81582 -12.56381 -12.54130 -12.30288 -12.15731 -11.89845 -11.66878 -11.29581 -11.22319 -11.00893 -10.82592 -10.46628 -9.83631 -9.69446 -9.28789 -9.23671 -8.89840 -8.54934 -7.48709 -6.63372 -6.38974 -4.02387 2.55609 2.78669 2.92054 3.11290 3.15557 3.20825 3.36012 4.06445 4.30618 4.52634 4.77200 4.85541 4.88450 4.95441 5.16820 5.23944 5.43139 5.46782 5.58076 5.62221 5.69773 5.85385 5.94993 6.27117 6.31487 6.33970 6.88223 6.94312 7.15110 7.21169 7.37197 7.55180 7.70294 7.85741 8.05592 8.15974 8.29882 8.49298 8.72928 8.81872 9.07138 9.16166 10.38269 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041665 B = 0.003629 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.869070 B = 7714.311811 C = 8210.101719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.621 5.621 4 C 0.075 3.925 5 C 0.511 3.489 6 O -0.536 6.536 7 C 0.124 3.876 8 N -0.751 5.751 9 C 0.092 3.908 10 C -0.166 4.166 11 C -0.125 4.125 12 C 0.075 3.925 13 C -0.466 4.466 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.185 4.185 22 C -0.154 4.154 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.396 0.604 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -12.276 -8.507 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.356 5.356 4 C -0.069 4.069 5 C 0.300 3.700 6 O -0.412 6.412 7 C -0.005 4.005 8 N -0.391 5.391 9 C -0.005 4.005 10 C -0.188 4.188 11 C -0.145 4.145 12 C 0.072 3.928 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.140 4.140 16 N -0.435 5.435 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.205 4.205 22 C -0.177 4.177 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.711 -12.527 -8.334 16.474 hybrid contribution 0.155 0.608 0.004 0.627 sum -6.556 -11.919 -8.330 15.951 Atomic orbital electron populations 1.22132 0.95907 1.02130 1.02434 1.21408 0.94420 0.82261 1.03076 1.47880 1.66846 1.14440 1.06425 1.21870 1.01566 0.98253 0.85162 1.20964 0.76840 0.89024 0.83214 1.90655 1.51783 1.67736 1.31037 1.20778 1.00890 0.90364 0.88500 1.43629 1.78109 1.13561 1.03763 1.17326 1.04846 0.84752 0.93567 1.20067 1.07873 0.95686 0.95140 1.20910 1.01279 0.94654 0.97631 1.17501 0.91553 0.92829 0.90922 1.19366 1.28719 0.99007 1.02670 0.90935 1.25789 0.93693 1.00033 0.94501 1.69855 1.23440 1.37115 1.13131 0.86415 0.79331 0.83319 0.78247 1.19874 1.20306 1.18672 1.20563 1.08688 0.93581 0.97652 1.19821 1.07666 0.97064 0.93102 0.92605 0.91651 0.92129 0.90615 0.89883 0.92154 0.90944 0.90401 0.90573 0.90494 0.76823 0.89513 0.86372 0.91370 0.88929 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.11 1.02 6.13 -4.04 -0.02 1.00 16 3 N -0.62 -6.74 2.87 -181.57 -0.52 -7.26 16 4 C 0.07 0.56 10.24 59.85 0.61 1.18 16 5 C 0.51 7.45 7.74 -10.98 -0.09 7.36 16 6 O -0.54 -9.52 15.25 5.56 0.08 -9.44 16 7 C 0.12 1.89 3.92 -5.19 -0.02 1.87 16 8 N -0.75 -14.37 5.67 -59.67 -0.34 -14.71 16 9 C 0.09 2.06 6.67 -83.68 -0.56 1.50 16 10 C -0.17 -3.85 9.23 -39.77 -0.37 -4.21 16 11 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 12 C 0.07 2.03 5.57 -106.79 -0.59 1.44 16 13 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 14 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 15 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 16 N -0.81 -21.35 10.98 55.54 0.61 -20.74 16 17 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.18 -4.65 9.74 -39.26 -0.38 -5.04 16 22 C -0.15 -3.60 9.82 -39.77 -0.39 -3.99 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 27 H 0.08 0.90 7.42 -51.93 -0.39 0.52 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.07 -51.92 -0.42 -0.02 16 30 H 0.08 0.58 6.44 -51.93 -0.33 0.25 16 31 H 0.08 1.09 7.19 -51.93 -0.37 0.71 16 32 H 0.08 1.13 7.88 -51.93 -0.41 0.72 16 33 H 0.40 7.60 7.43 -40.82 -0.30 7.30 16 34 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 35 H 0.12 3.17 6.18 -52.48 -0.32 2.85 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -30.72 318.04 -8.01 -38.73 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.41 Total: 9.21 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.20 Total: -14.73 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.25 Total: -42.71 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.72 -8.01 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.080 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds