Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46958 * 2 1 4 4 C 1.46500 * 120.00021 * 269.99667 * 3 2 1 5 5 C 1.34773 * 120.00176 * 90.00149 * 3 2 1 6 6 O 1.21280 * 120.00129 * 359.97438 * 5 3 2 7 7 C 1.50707 * 120.00199 * 179.97438 * 5 3 2 8 8 N 1.46495 * 109.47011 * 179.97438 * 7 5 3 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 5 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.09002 * 109.47160 * 59.99544 * 1 2 3 24 24 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46994 * 300.00129 * 1 2 3 26 26 H 1.08996 * 109.46713 * 240.00088 * 2 1 3 27 27 H 1.09001 * 109.46675 * 119.99865 * 2 1 3 28 28 H 1.08999 * 109.47479 * 270.00165 * 4 3 2 29 29 H 1.09008 * 109.47147 * 30.00608 * 4 3 2 30 30 H 1.08998 * 109.47272 * 150.00079 * 4 3 2 31 31 H 1.08998 * 109.46728 * 60.00222 * 7 5 3 32 32 H 1.08993 * 109.46898 * 300.00224 * 7 5 3 33 33 H 0.96996 * 120.00438 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 35 35 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 36 36 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2430 2.0166 1.1671 6 8 2.0404 1.4450 2.2175 7 6 2.7458 3.4373 1.1672 8 7 2.9079 3.8979 2.5483 9 6 3.3628 5.1851 2.8020 10 6 3.6700 6.0353 1.7387 11 6 4.1118 7.3023 1.9804 12 6 4.2688 7.7488 3.3074 13 6 4.7317 9.0569 3.5652 14 1 4.4855 9.5428 4.4978 15 6 5.5092 9.7240 2.6131 16 7 6.0993 9.0481 1.6599 17 14 5.7057 11.5796 2.7015 18 1 6.9497 11.9109 3.4415 19 1 5.7847 12.1350 1.3266 20 1 4.5386 12.1678 3.4067 21 6 3.9623 6.8830 4.3758 22 6 3.5157 5.6206 4.1192 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2920 1.9006 -1.5834 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 2.0281 4.0766 0.6532 32 1 3.7061 3.4827 0.6535 33 1 2.6975 3.3038 3.2856 34 1 3.5537 5.6901 0.7220 35 1 4.3449 7.9607 1.1565 36 1 6.6382 9.5107 0.9993 37 1 4.0807 7.2186 5.3954 38 1 3.2807 4.9557 4.9372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = -29.366138 kcal Electronic energy + Delta-G solvation = -18945.816603 eV Core-core repulsion = 15980.181131 eV Total energy + Delta-G solvation = -2965.635472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14053 -39.61866 -37.08041 -36.43886 -34.71585 -32.49463 -31.34566 -30.79648 -28.39384 -27.51476 -25.84291 -24.04778 -22.97408 -21.82421 -20.18578 -19.14411 -18.63280 -17.60581 -17.06918 -16.93464 -16.66679 -16.06682 -15.57735 -14.94728 -14.84701 -14.52655 -14.40472 -14.12040 -13.92984 -13.69912 -13.48688 -13.43481 -13.12386 -12.99449 -12.87098 -12.71449 -12.58506 -12.25776 -11.97136 -11.58126 -11.19229 -11.08025 -10.96911 -10.35624 -9.75960 -9.40476 -8.54138 -8.20296 -6.00505 1.11080 1.18529 1.42448 1.45503 1.54432 1.60694 1.86779 2.29466 2.84778 2.90450 3.47167 3.85401 4.12591 4.22170 4.27482 4.33903 4.41309 4.48923 4.50525 4.52485 4.71915 4.81022 4.94103 4.98273 5.03332 5.11522 5.26416 5.27847 5.45582 5.52618 5.67480 5.78450 5.95186 6.18703 6.21123 6.39789 6.66150 6.84701 6.99126 7.09510 7.10049 7.25795 8.49578 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041665 B = 0.003629 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.869070 B = 7714.311811 C = 8210.101719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.612 5.612 4 C 0.065 3.935 5 C 0.508 3.492 6 O -0.577 6.577 7 C 0.120 3.880 8 N -0.750 5.750 9 C 0.108 3.892 10 C -0.169 4.169 11 C -0.141 4.141 12 C 0.038 3.962 13 C -0.506 4.506 14 H 0.066 0.934 15 C 0.034 3.966 16 N -0.838 5.838 17 Si 0.976 3.024 18 H -0.267 1.267 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.283 0.717 37 H 0.096 0.904 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -13.073 -10.426 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.345 5.345 4 C -0.076 4.076 5 C 0.297 3.703 6 O -0.457 6.457 7 C -0.008 4.008 8 N -0.387 5.387 9 C 0.009 3.991 10 C -0.191 4.191 11 C -0.161 4.161 12 C 0.035 3.965 13 C -0.537 4.537 14 H 0.084 0.916 15 C -0.178 4.178 16 N -0.466 5.466 17 Si 0.797 3.203 18 H -0.192 1.192 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.217 4.217 22 C -0.188 4.188 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.049 0.951 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.182 -13.370 -10.309 18.347 hybrid contribution 0.234 0.644 0.536 0.870 sum -6.949 -12.726 -9.773 17.485 Atomic orbital electron populations 1.22084 0.95231 1.03110 1.01584 1.21604 0.94953 0.81322 1.03730 1.47985 1.65102 1.14984 1.06424 1.22165 1.03181 0.98256 0.84034 1.20832 0.76963 0.88698 0.83830 1.90640 1.53979 1.68425 1.32698 1.20980 1.02036 0.91411 0.86404 1.43701 1.77083 1.12190 1.05758 1.17425 1.02756 0.85800 0.93112 1.20280 1.07149 0.94725 0.96901 1.20885 1.02547 0.95807 0.96880 1.17838 0.93059 0.93624 0.91987 1.19584 1.30589 1.00007 1.03523 0.91553 1.26584 0.92767 1.04677 0.93800 1.69902 1.23892 1.39025 1.13821 0.85298 0.79213 0.77063 0.78682 1.19189 1.19052 1.18678 1.20729 1.09012 0.94337 0.97579 1.20079 1.07528 0.96776 0.94439 0.91203 0.89867 0.95075 0.87190 0.91968 0.90864 0.88226 0.90258 0.88925 0.89263 0.76821 0.86498 0.87753 0.90632 0.88620 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 71.98 0.74 -1.66 16 2 C 0.11 1.70 6.13 86.38 0.53 2.23 16 3 N -0.61 -11.75 2.87 -846.75 -2.43 -14.18 16 4 C 0.07 0.75 10.24 127.77 1.31 2.06 16 5 C 0.51 14.04 7.74 87.66 0.68 14.72 16 6 O -0.58 -20.31 15.25 -3.03 -0.05 -20.36 16 7 C 0.12 3.40 3.92 85.64 0.34 3.74 16 8 N -0.75 -27.60 5.67 -342.71 -1.94 -29.54 16 9 C 0.11 4.74 6.67 38.67 0.26 5.00 16 10 C -0.17 -7.68 9.23 22.15 0.20 -7.48 16 11 C -0.14 -7.48 8.63 22.48 0.19 -7.28 16 12 C 0.04 2.11 5.57 -21.27 -0.12 1.99 16 13 C -0.51 -28.47 9.03 23.38 0.21 -28.26 16 14 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 15 C 0.03 1.78 5.13 85.23 0.44 2.21 16 16 N -0.84 -44.97 10.98 21.82 0.24 -44.74 16 17 Si 0.98 39.73 29.60 68.60 2.03 41.76 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 C -0.20 -10.11 9.74 22.48 0.22 -9.89 16 22 C -0.17 -7.70 9.82 22.15 0.22 -7.48 16 23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.11 1.04 8.07 -2.39 -0.02 1.03 16 27 H 0.06 1.29 7.42 -2.39 -0.02 1.27 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.65 8.07 -2.38 -0.02 0.63 16 30 H 0.08 0.92 6.44 -2.39 -0.02 0.90 16 31 H 0.09 2.38 7.19 -2.39 -0.02 2.36 16 32 H 0.09 2.37 7.88 -2.39 -0.02 2.35 16 33 H 0.40 14.82 7.43 -92.71 -0.69 14.13 16 34 H 0.12 4.50 6.68 -2.91 -0.02 4.48 16 35 H 0.10 5.74 6.18 -2.91 -0.02 5.72 16 36 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 37 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -68.13 318.04 3.43 -64.70 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.37 Total: 32.47 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 5.21 Total: -30.10 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -4.14 Total: -88.46 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -68.13 3.43 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.335 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds