Wall clock time and date at job start Mon Mar 30 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46769 * 2 1 4 4 C 1.34779 * 119.99506 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00435 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99643 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47000 * 179.97438 * 6 4 3 8 8 N 1.46495 * 109.46861 * 180.02562 * 7 6 4 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.47259 * 59.99713 * 1 2 3 24 24 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46798 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.47015 * 240.00356 * 2 1 3 27 27 H 1.09000 * 109.46659 * 119.99821 * 2 1 3 28 28 H 0.96996 * 120.00435 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47000 * 60.00599 * 6 4 3 30 30 H 1.09000 * 109.47389 * 300.00458 * 6 4 3 31 31 H 1.08998 * 109.46658 * 60.00508 * 7 6 4 32 32 H 1.08993 * 109.47119 * 300.00419 * 7 6 4 33 33 H 0.96996 * 120.00438 * 0.02562 * 8 7 6 34 34 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 35 35 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 36 36 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7058 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3757 3.0484 0.0023 8 7 5.8640 4.4296 0.0035 9 6 7.2292 4.6834 0.0041 10 6 8.1332 3.6201 0.0094 11 6 9.4750 3.8618 0.0044 12 6 9.9482 5.1888 0.0055 13 6 11.3358 5.4467 0.0067 14 1 11.7120 6.3799 -0.3861 15 6 12.2238 4.4940 0.5166 16 7 11.7829 3.5399 1.2968 17 14 14.0389 4.5830 0.0841 18 1 14.7655 5.3217 1.1478 19 1 14.5890 3.2083 -0.0280 20 1 14.2049 5.2899 -1.2114 21 6 9.0297 6.2572 0.0060 22 6 7.6908 6.0006 0.0049 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3880 2.1185 0.0004 29 1 3.4821 3.5619 0.8912 30 1 3.4826 3.5625 -0.8888 31 1 5.7397 2.5348 -0.8876 32 1 5.7384 2.5344 0.8924 33 1 5.2337 5.1669 0.0038 34 1 7.7690 2.6034 0.0134 35 1 10.1735 3.0380 0.0040 36 1 12.3987 2.8789 1.6502 37 1 9.3856 7.2769 0.0072 38 1 6.9855 6.8185 0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051759362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:15 Heat of formation + Delta-G solvation = -26.058103 kcal Electronic energy + Delta-G solvation = -18432.153398 eV Core-core repulsion = 15466.661373 eV Total energy + Delta-G solvation = -2965.492025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86109 -37.88632 -35.69270 -35.12819 -33.19940 -31.51000 -30.19140 -29.38855 -28.03857 -24.81368 -23.59382 -22.57125 -21.08814 -20.37538 -19.79264 -17.23715 -17.13707 -16.38223 -16.09880 -15.69352 -14.94752 -14.91160 -14.61164 -13.79806 -13.60768 -13.54382 -12.90570 -12.67395 -12.41242 -12.19919 -12.10205 -12.05659 -11.75200 -11.57409 -11.35518 -11.02485 -10.96337 -10.75764 -10.39557 -9.97073 -9.64674 -9.31961 -9.22470 -9.15446 -8.47619 -7.42801 -6.58724 -6.33546 -3.97939 2.53404 2.93986 2.96301 3.16238 3.19041 3.23889 3.40370 4.10094 4.29593 4.61521 4.72506 4.79060 4.82406 4.96364 5.08634 5.10516 5.42388 5.49080 5.55322 5.68406 5.87769 6.16332 6.19207 6.27483 6.33046 6.42971 6.98419 7.01442 7.25166 7.26609 7.41399 7.60109 7.75441 7.90577 8.07553 8.21577 8.34154 8.54002 8.75740 8.85450 9.11681 9.21083 10.43158 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041372 B = 0.003139 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.621343 B = 8918.680898 C = 9499.133260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.737 5.737 4 C 0.516 3.484 5 O -0.532 6.532 6 C -0.150 4.150 7 C 0.154 3.846 8 N -0.765 5.765 9 C 0.091 3.909 10 C -0.162 4.162 11 C -0.124 4.124 12 C 0.075 3.925 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.807 5.807 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.189 4.189 22 C -0.159 4.159 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.400 0.600 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.382 0.618 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.276 0.724 37 H 0.091 0.909 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.505 -3.620 -1.859 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.391 5.391 4 C 0.302 3.698 5 O -0.408 6.408 6 C -0.190 4.190 7 C 0.028 3.972 8 N -0.401 5.401 9 C -0.006 4.006 10 C -0.184 4.184 11 C -0.144 4.144 12 C 0.072 3.928 13 C -0.498 4.498 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.209 4.209 22 C -0.181 4.181 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.234 0.766 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.214 0.786 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.801 -4.719 -1.718 19.460 hybrid contribution 0.191 0.583 -0.030 0.614 sum -18.610 -4.135 -1.749 19.144 Atomic orbital electron populations 1.22003 0.94507 1.03219 1.02472 1.21291 0.94117 0.83214 1.02505 1.46087 1.07269 1.08845 1.76892 1.20627 0.81981 0.91651 0.75519 1.90749 1.55152 1.46552 1.48312 1.21807 0.98806 0.93827 1.04588 1.20670 0.89451 0.85279 1.01797 1.43806 1.03993 1.04477 1.87818 1.17318 0.82255 0.93354 1.07645 1.20155 0.93760 0.95628 1.08821 1.20946 0.93156 0.97615 1.02715 1.17507 0.93029 0.90925 0.91378 1.19351 0.91159 1.02603 1.36718 0.90973 1.25801 1.00888 0.94526 0.92885 1.69858 1.37072 1.13023 1.23479 0.86418 0.82749 0.78256 0.79895 1.19897 1.20298 1.18693 1.20531 0.92188 0.97528 1.10637 1.19790 0.95498 0.92979 1.09814 0.91995 0.90819 0.91981 0.91511 0.91501 0.76614 0.88548 0.88557 0.92677 0.92635 0.78556 0.89166 0.86409 0.91334 0.89070 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 10.03 37.16 0.37 -0.40 16 2 C 0.11 0.89 6.39 -4.04 -0.03 0.86 16 3 N -0.74 -6.21 5.56 -60.29 -0.33 -6.54 16 4 C 0.52 6.31 7.83 -10.98 -0.09 6.23 16 5 O -0.53 -9.03 15.98 5.56 0.09 -8.94 16 6 C -0.15 -1.62 5.81 -27.88 -0.16 -1.79 16 7 C 0.15 2.47 4.18 -4.04 -0.02 2.45 16 8 N -0.76 -13.48 5.70 -58.50 -0.33 -13.81 16 9 C 0.09 2.05 6.67 -83.68 -0.56 1.49 16 10 C -0.16 -4.01 9.23 -39.77 -0.37 -4.37 16 11 C -0.12 -3.40 8.63 -39.26 -0.34 -3.74 16 12 C 0.07 2.08 5.57 -106.79 -0.59 1.48 16 13 C -0.47 -13.00 9.03 -37.87 -0.34 -13.35 16 14 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 15 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 16 N -0.81 -22.09 10.98 55.54 0.61 -21.48 16 17 Si 0.90 19.70 29.60 -169.99 -5.03 14.67 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.19 -4.78 9.74 -39.26 -0.38 -5.17 16 22 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 23 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 2.10 8.47 -40.82 -0.35 1.76 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 32 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 33 H 0.38 5.65 8.47 -40.82 -0.35 5.31 16 34 H 0.09 2.12 6.68 -52.49 -0.35 1.77 16 35 H 0.12 3.34 6.18 -52.48 -0.32 3.02 16 36 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -32.45 322.08 -8.67 -41.12 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.54 Total: 8.58 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.98 Total: -18.45 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.06 Total: -41.84 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.45 -8.67 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051759362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.060 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds