Wall clock time and date at job start Mon Mar 30 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46769 * 2 1 4 4 C 1.34779 * 119.99506 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00435 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99643 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.47000 * 179.97438 * 6 4 3 8 8 N 1.46495 * 109.46861 * 180.02562 * 7 6 4 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.47259 * 59.99713 * 1 2 3 24 24 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46798 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.47015 * 240.00356 * 2 1 3 27 27 H 1.09000 * 109.46659 * 119.99821 * 2 1 3 28 28 H 0.96996 * 120.00435 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47000 * 60.00599 * 6 4 3 30 30 H 1.09000 * 109.47389 * 300.00458 * 6 4 3 31 31 H 1.08998 * 109.46658 * 60.00508 * 7 6 4 32 32 H 1.08993 * 109.47119 * 300.00419 * 7 6 4 33 33 H 0.96996 * 120.00438 * 0.02562 * 8 7 6 34 34 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 35 35 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 36 36 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1316 0.7058 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3757 3.0484 0.0023 8 7 5.8640 4.4296 0.0035 9 6 7.2292 4.6834 0.0041 10 6 8.1332 3.6201 0.0094 11 6 9.4750 3.8618 0.0044 12 6 9.9482 5.1888 0.0055 13 6 11.3358 5.4467 0.0067 14 1 11.7120 6.3799 -0.3861 15 6 12.2238 4.4940 0.5166 16 7 11.7829 3.5399 1.2968 17 14 14.0389 4.5830 0.0841 18 1 14.7655 5.3217 1.1478 19 1 14.5890 3.2083 -0.0280 20 1 14.2049 5.2899 -1.2114 21 6 9.0297 6.2572 0.0060 22 6 7.6908 6.0006 0.0049 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3880 2.1185 0.0004 29 1 3.4821 3.5619 0.8912 30 1 3.4826 3.5625 -0.8888 31 1 5.7397 2.5348 -0.8876 32 1 5.7384 2.5344 0.8924 33 1 5.2337 5.1669 0.0038 34 1 7.7690 2.6034 0.0134 35 1 10.1735 3.0380 0.0040 36 1 12.3987 2.8789 1.6502 37 1 9.3856 7.2769 0.0072 38 1 6.9855 6.8185 0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051759362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:14 Heat of formation + Delta-G solvation = -48.484182 kcal Electronic energy + Delta-G solvation = -18433.125866 eV Core-core repulsion = 15466.661373 eV Total energy + Delta-G solvation = -2966.464492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84898 -39.71672 -37.00799 -36.28012 -35.00704 -32.69385 -31.36108 -31.24295 -29.67846 -26.44533 -24.96036 -23.54274 -22.75493 -21.75867 -21.31175 -19.14810 -18.35082 -17.67203 -17.01391 -16.91240 -16.66123 -16.17755 -15.77753 -15.58870 -14.78824 -14.63618 -14.51190 -14.20110 -13.91829 -13.60140 -13.35976 -13.26314 -12.77099 -12.71116 -12.69400 -12.60454 -12.42809 -12.34620 -12.19028 -11.58600 -11.18870 -11.05646 -10.98760 -10.31826 -10.11616 -9.40892 -8.54970 -8.17607 -6.01069 1.10454 1.18410 1.39713 1.52918 1.59082 1.59546 2.10756 2.27380 2.84619 2.99843 3.73662 3.84906 4.03857 4.13901 4.20721 4.22799 4.44115 4.51815 4.52729 4.57645 4.93419 4.94148 4.96492 5.05724 5.06076 5.15029 5.26417 5.28032 5.45362 5.46758 5.66316 5.81309 5.96998 6.19414 6.37558 6.53131 6.64545 6.85055 7.08253 7.15579 7.24649 7.36184 8.48710 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041372 B = 0.003139 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.621343 B = 8918.680898 C = 9499.133260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.717 5.717 4 C 0.512 3.488 5 O -0.591 6.591 6 C -0.134 4.134 7 C 0.153 3.847 8 N -0.747 5.747 9 C 0.109 3.891 10 C -0.178 4.178 11 C -0.147 4.147 12 C 0.035 3.965 13 C -0.504 4.504 14 H 0.071 0.929 15 C 0.028 3.972 16 N -0.844 5.844 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.259 1.259 21 C -0.194 4.194 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.419 0.581 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.403 0.597 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.281 0.719 37 H 0.102 0.898 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.023 -2.248 -2.127 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.370 5.370 4 C 0.299 3.701 5 O -0.471 6.471 6 C -0.174 4.174 7 C 0.028 3.972 8 N -0.384 5.384 9 C 0.010 3.990 10 C -0.201 4.201 11 C -0.167 4.167 12 C 0.032 3.968 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.183 4.183 16 N -0.472 5.472 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.183 1.183 21 C -0.214 4.214 22 C -0.181 4.181 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.257 0.743 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.239 0.761 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.429 -3.308 -1.987 21.774 hybrid contribution 0.739 0.144 0.056 0.755 sum -20.691 -3.163 -1.931 21.020 Atomic orbital electron populations 1.21945 0.91527 1.04174 1.03486 1.21385 0.96456 0.82607 1.01212 1.45952 1.06365 1.09921 1.74797 1.20911 0.82758 0.91606 0.74855 1.90739 1.56822 1.48209 1.51346 1.21683 0.94514 0.93542 1.07636 1.20621 0.93327 0.83711 0.99585 1.43730 1.02344 1.06049 1.86239 1.17429 0.84232 0.92735 1.04631 1.20244 0.93443 0.96712 1.09661 1.20840 0.93942 0.97149 1.04794 1.17844 0.93975 0.91741 0.93238 1.19602 0.92010 1.03508 1.38413 0.91070 1.26681 1.05668 0.93823 0.92170 1.69938 1.38901 1.13923 1.24462 0.85265 0.76559 0.78528 0.79713 1.18825 1.19544 1.18322 1.20802 0.93196 0.97489 1.09945 1.20133 0.95288 0.94185 1.08494 0.90893 0.89984 0.90939 0.92870 0.92952 0.74311 0.85476 0.85283 0.94848 0.95213 0.76101 0.88942 0.88745 0.90841 0.87974 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.03 71.98 0.72 -0.32 16 2 C 0.11 1.56 6.39 86.38 0.55 2.11 16 3 N -0.72 -10.36 5.56 -463.04 -2.57 -12.94 16 4 C 0.51 11.75 7.83 87.66 0.69 12.43 16 5 O -0.59 -20.41 15.98 -3.02 -0.05 -20.46 16 6 C -0.13 -2.47 5.81 29.85 0.17 -2.30 16 7 C 0.15 4.74 4.18 86.38 0.36 5.10 16 8 N -0.75 -24.35 5.70 -339.00 -1.93 -26.28 16 9 C 0.11 4.78 6.67 38.67 0.26 5.04 16 10 C -0.18 -9.06 9.23 22.15 0.20 -8.85 16 11 C -0.15 -8.42 8.63 22.48 0.19 -8.22 16 12 C 0.03 2.00 5.57 -21.27 -0.12 1.89 16 13 C -0.50 -29.04 9.03 23.38 0.21 -28.83 16 14 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 15 C 0.03 1.54 5.13 85.23 0.44 1.97 16 16 N -0.84 -48.11 10.98 21.82 0.24 -47.87 16 17 Si 0.98 41.35 29.60 68.60 2.03 43.38 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.19 -9.82 9.74 22.48 0.22 -9.60 16 22 C -0.16 -6.95 9.82 22.15 0.22 -6.73 16 23 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.42 2.80 8.47 -92.71 -0.79 2.02 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.19 7.89 -2.39 -0.02 1.17 16 32 H 0.03 1.08 7.87 -2.39 -0.02 1.07 16 33 H 0.40 10.08 8.47 -92.71 -0.79 9.29 16 34 H 0.09 4.53 6.68 -2.91 -0.02 4.52 16 35 H 0.09 5.73 6.18 -2.91 -0.02 5.71 16 36 H 0.28 14.63 8.30 -92.71 -0.77 13.86 16 37 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -75.03 322.08 1.33 -73.70 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.50 Total: 26.78 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 4.12 Total: -36.31 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.27 Total: -87.09 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -75.03 1.33 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051759362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.214 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds