Wall clock time and date at job start Mon Mar 30 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46796 * 2 1 4 4 C 1.50698 * 109.47004 * 239.99808 * 2 1 3 5 5 H 1.07997 * 120.00248 * 239.99350 * 4 2 1 6 6 C 1.37884 * 119.99842 * 59.99977 * 4 2 1 7 7 N 1.31508 * 120.00018 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99715 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47189 * 270.00133 * 8 6 4 10 10 H 1.48506 * 109.47338 * 30.00210 * 8 6 4 11 11 H 1.48499 * 109.47257 * 150.00089 * 8 6 4 12 12 N 1.46505 * 109.47364 * 120.00070 * 2 1 3 13 13 C 1.34777 * 119.99634 * 275.00300 * 12 2 1 14 14 O 1.21284 * 120.00157 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99680 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47150 * 85.32713 * 15 13 12 17 17 N 1.46900 * 109.46851 * 325.32259 * 15 13 12 18 18 C 1.50700 * 109.46841 * 205.32803 * 15 13 12 19 19 C 1.38237 * 119.99750 * 286.74803 * 18 15 13 20 20 C 1.38234 * 119.99804 * 179.76791 * 19 18 15 21 21 C 1.38230 * 120.00388 * 0.50697 * 20 19 18 22 22 C 1.38241 * 119.99618 * 359.74901 * 21 20 19 23 23 C 1.38230 * 119.99827 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47007 * 299.99722 * 1 2 3 25 25 H 1.08994 * 109.47522 * 60.00185 * 1 2 3 26 26 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99830 * 179.97438 * 7 6 4 28 28 H 0.96998 * 119.99964 * 95.00082 * 12 2 1 29 29 H 1.09002 * 109.47147 * 59.99736 * 16 15 13 30 30 H 1.09000 * 109.46671 * 180.02562 * 16 15 13 31 31 H 1.08997 * 109.46835 * 299.99725 * 16 15 13 32 32 H 1.00902 * 110.99439 * 176.04494 * 17 15 13 33 33 H 1.00895 * 110.99976 * 299.99950 * 17 15 13 34 34 H 1.08005 * 120.00077 * 0.02562 * 19 18 15 35 35 H 1.08011 * 119.99863 * 180.23453 * 20 19 18 36 36 H 1.07997 * 120.00455 * 179.72478 * 21 20 19 37 37 H 1.07999 * 119.99706 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.00095 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.6304 -0.5441 -4.4118 10 1 2.4879 -2.5655 -3.7121 11 1 1.3444 -0.9491 -5.1123 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6500 -0.7285 3.5875 16 6 4.1800 -0.7207 3.5912 17 7 2.1673 -2.1159 3.5835 18 6 2.1410 -0.0231 4.8180 19 6 2.6769 1.1966 5.1869 20 6 2.2066 1.8460 6.3130 21 6 1.2079 1.2708 7.0761 22 6 0.6757 0.0486 6.7102 23 6 1.1419 -0.5981 5.5810 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7086 1.1611 -3.4844 28 1 2.2491 -1.6318 1.1526 29 1 4.5381 0.3088 3.5941 30 1 4.5437 -1.2348 4.4809 31 1 4.5481 -1.2310 2.7012 32 1 2.5436 -2.6318 4.3648 33 1 1.1589 -2.1479 3.5810 34 1 3.4601 1.6442 4.5929 35 1 2.6227 2.8008 6.5990 36 1 0.8436 1.7761 7.9584 37 1 -0.1044 -0.4010 7.3067 38 1 0.7265 -1.5532 5.2953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052883120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:53 Heat of formation + Delta-G solvation = -13.504219 kcal Electronic energy + Delta-G solvation = -19876.353168 eV Core-core repulsion = 16911.405521 eV Total energy + Delta-G solvation = -2964.947647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18504 -38.27711 -35.48552 -34.67193 -32.24894 -31.15574 -30.06239 -28.98361 -28.43674 -25.21564 -24.16212 -22.30730 -22.13847 -20.23232 -18.98144 -17.31368 -17.15360 -15.87290 -15.65646 -15.29224 -14.88602 -14.62314 -14.15440 -14.01945 -13.49087 -13.43595 -13.13990 -12.63147 -12.36007 -12.12413 -11.89048 -11.88217 -11.63017 -11.13356 -11.02527 -10.94452 -10.85358 -10.65247 -10.26578 -10.18855 -9.24494 -9.00767 -8.84070 -8.74650 -8.58553 -8.48931 -7.79621 -6.07829 -4.16537 1.38191 1.48479 3.27695 3.34099 3.36340 3.40171 3.77934 4.23349 4.41577 4.45039 4.73536 4.88959 5.00923 5.13816 5.23807 5.27572 5.49944 5.52692 5.61022 5.79112 5.89814 6.03530 6.09349 6.18954 6.48832 6.56691 6.59125 6.86830 6.98410 7.02755 7.04921 7.20437 7.35169 7.53369 7.65354 7.76638 7.97652 8.20077 8.78667 8.84246 9.23605 9.51380 10.98177 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.004733 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.729821 B = 5914.201669 C = 6107.896117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.046 0.954 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.692 5.692 13 C 0.513 3.487 14 O -0.552 6.552 15 C 0.137 3.863 16 C -0.132 4.132 17 N -0.829 5.829 18 C -0.092 4.092 19 C -0.081 4.081 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.124 4.124 24 H 0.012 0.988 25 H 0.089 0.911 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.398 0.602 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.345 0.655 33 H 0.347 0.653 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -4.144 16.769 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.339 5.339 13 C 0.296 3.704 14 O -0.431 6.431 15 C 0.040 3.960 16 C -0.190 4.190 17 N -0.361 5.361 18 C -0.094 4.094 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.031 0.969 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.725 -3.259 15.882 16.440 hybrid contribution -0.179 -0.599 0.040 0.626 sum 2.546 -3.857 15.922 16.579 Atomic orbital electron populations 1.22060 0.98563 0.99049 1.00734 1.18745 0.90985 0.93929 0.80253 0.93598 1.21232 1.32221 1.13142 0.90286 0.92025 1.24890 0.94844 0.94983 0.99037 1.69909 1.35985 1.22586 1.23772 0.86452 0.78552 0.79905 0.82207 1.20607 1.19807 1.21141 1.46451 1.63650 1.14074 1.09750 1.19924 0.78892 0.87152 0.84458 1.90673 1.51295 1.16039 1.85069 1.19982 0.96811 0.87839 0.91349 1.21782 0.91309 1.02899 1.03034 1.58872 1.14749 1.11053 1.51425 1.20338 0.96862 0.96211 0.96004 1.21010 0.99533 0.93915 0.95483 1.21152 0.97523 0.99737 0.95565 1.21105 0.97343 0.95896 0.99938 1.21006 1.00063 0.95760 0.97198 1.20932 0.97144 1.00340 0.95834 0.96860 0.89230 0.95467 0.92662 0.76822 0.91356 0.91886 0.90703 0.84063 0.83807 0.85821 0.86178 0.86400 0.86321 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.69 -14.87 4.97 -54.93 -0.27 -15.15 16 13 C 0.51 10.46 6.62 -10.98 -0.07 10.39 16 14 O -0.55 -13.41 15.24 5.55 0.08 -13.33 16 15 C 0.14 2.04 0.99 -133.90 -0.13 1.91 16 16 C -0.13 -1.74 8.36 37.16 0.31 -1.43 16 17 N -0.83 -10.07 7.45 -1.14 -0.01 -10.08 16 18 C -0.09 -1.34 4.47 -104.63 -0.47 -1.81 16 19 C -0.08 -1.19 8.26 -39.58 -0.33 -1.52 16 20 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.59 9.15 -39.59 -0.36 -1.96 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.40 7.81 7.89 -40.82 -0.32 7.48 16 29 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.35 3.31 8.84 -39.29 -0.35 2.96 16 33 H 0.35 4.21 7.48 -39.29 -0.29 3.91 16 34 H 0.12 1.83 6.83 -52.48 -0.36 1.47 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.26 6.24 -52.48 -0.33 0.93 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -31.21 314.17 -7.54 -38.75 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.21 Total: 13.54 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.47 Total: -9.70 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.35 Total: -49.87 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.21 -7.54 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052883120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.244 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds