Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47442 * 2 1 4 4 C 1.50705 * 109.47080 * 119.99919 * 2 1 3 5 5 H 1.07996 * 120.00211 * 119.99920 * 4 2 1 6 6 C 1.37879 * 119.99271 * 299.99857 * 4 2 1 7 7 N 1.31515 * 120.00719 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99523 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47172 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47181 * 120.00264 * 8 6 4 11 11 H 1.48503 * 109.47226 * 240.00060 * 8 6 4 12 12 N 1.46502 * 109.47249 * 239.99323 * 2 1 3 13 13 C 1.34776 * 119.99619 * 85.00535 * 12 2 1 14 14 O 1.21276 * 120.00265 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99762 * 179.72858 * 13 12 2 16 16 C 1.53005 * 109.46952 * 274.87283 * 15 13 12 17 17 N 1.46901 * 109.47487 * 34.86875 * 15 13 12 18 18 C 1.50704 * 109.47319 * 154.87583 * 15 13 12 19 19 C 1.38236 * 119.99933 * 252.59010 * 18 15 13 20 20 C 1.38236 * 120.00107 * 179.78624 * 19 18 15 21 21 C 1.38235 * 119.99957 * 0.44034 * 20 19 18 22 22 C 1.38238 * 119.99596 * 359.81421 * 21 20 19 23 23 C 1.38230 * 120.00024 * 72.86092 * 18 15 13 24 24 H 1.08995 * 109.46839 * 60.00420 * 1 2 3 25 25 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47157 * 300.00480 * 1 2 3 27 27 H 0.97001 * 120.00049 * 180.02562 * 7 6 4 28 28 H 0.96994 * 119.99941 * 265.00080 * 12 2 1 29 29 H 1.08997 * 109.47368 * 59.99928 * 16 15 13 30 30 H 1.09000 * 109.47385 * 180.02562 * 16 15 13 31 31 H 1.09003 * 109.47169 * 299.99919 * 16 15 13 32 32 H 1.00903 * 110.99486 * 60.00284 * 17 15 13 33 33 H 1.00901 * 111.00014 * 183.95315 * 17 15 13 34 34 H 1.08001 * 119.99450 * 359.97438 * 19 18 15 35 35 H 1.07996 * 119.99585 * 180.27333 * 20 19 18 36 36 H 1.07993 * 120.00001 * 179.83202 * 21 20 19 37 37 H 1.08002 * 119.99494 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.00171 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2862 3.6040 10 1 3.1471 -0.1855 4.8161 11 1 1.1677 -1.5863 4.8166 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1582 -2.4117 15 6 2.6553 -0.7274 -3.5859 16 6 4.1854 -0.7185 -3.5838 17 7 2.1739 -2.1153 -3.5849 18 6 2.1506 -0.0215 -4.8180 19 6 1.1608 -0.6007 -5.5899 20 6 0.6948 0.0488 -6.7176 21 6 1.2249 1.2734 -7.0786 22 6 2.2184 1.8501 -6.3096 23 6 2.6814 1.2026 -5.1795 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7087 1.1615 3.4844 28 1 2.2491 -1.6318 -1.1524 29 1 4.5505 -1.2290 -2.6927 30 1 4.5530 -1.2309 -4.4728 31 1 4.5427 0.3113 -3.5846 32 1 1.1654 -2.1481 -3.5863 33 1 2.5535 -2.6303 -4.3651 34 1 0.7496 -1.5594 -5.3100 35 1 -0.0816 -0.4017 -7.3180 36 1 0.8627 1.7796 -7.9611 37 1 2.6329 2.8067 -6.5919 38 1 3.4575 1.6533 -4.5787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052883121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -13.554914 kcal Electronic energy + Delta-G solvation = -19876.072767 eV Core-core repulsion = 16911.122921 eV Total energy + Delta-G solvation = -2964.949846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18563 -38.27802 -35.48584 -34.67372 -32.24964 -31.15424 -30.06161 -28.98510 -28.43621 -25.21797 -24.16216 -22.30934 -22.13746 -20.23359 -18.98244 -17.31397 -17.15172 -15.87547 -15.65534 -15.29550 -14.88638 -14.62369 -14.15213 -14.02202 -13.48882 -13.43485 -13.13777 -12.63396 -12.36565 -12.12185 -11.89115 -11.88419 -11.63435 -11.13587 -11.03846 -10.93162 -10.84763 -10.65175 -10.26157 -10.19567 -9.24366 -8.99587 -8.84086 -8.74693 -8.58668 -8.49611 -7.79643 -6.08088 -4.16744 1.38133 1.48549 3.26542 3.34205 3.37300 3.40234 3.77894 4.23360 4.41540 4.44897 4.73562 4.88995 5.00943 5.13901 5.23652 5.27606 5.49878 5.52744 5.61101 5.79253 5.89762 6.03543 6.09420 6.19068 6.48815 6.56710 6.59153 6.86797 6.98403 7.02646 7.04946 7.20368 7.35080 7.53293 7.65422 7.76539 7.97606 8.19915 8.78679 8.84242 9.23569 9.51281 10.97934 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035785 B = 0.004732 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.272861 B = 5915.446809 C = 6109.407234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.262 3.738 3 H 0.046 0.954 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.692 5.692 13 C 0.513 3.487 14 O -0.552 6.552 15 C 0.137 3.863 16 C -0.132 4.132 17 N -0.829 5.829 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.081 4.081 24 H 0.012 0.988 25 H 0.026 0.974 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.398 0.602 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -4.142 -16.775 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.339 5.339 13 C 0.296 3.704 14 O -0.431 6.431 15 C 0.040 3.960 16 C -0.190 4.190 17 N -0.361 5.361 18 C -0.094 4.094 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.099 4.099 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.768 -3.258 -15.889 16.454 hybrid contribution -0.192 -0.595 -0.038 0.626 sum 2.576 -3.853 -15.927 16.587 Atomic orbital electron populations 1.22061 0.98563 0.99056 1.00739 1.18753 0.90988 0.93937 0.80270 0.93588 1.21273 1.32155 1.13105 0.90272 0.91963 1.24893 0.94864 0.94968 0.99049 1.69920 1.36087 1.22583 1.23668 0.86402 0.78594 0.79551 0.82602 1.19686 1.20937 1.20932 1.46448 1.63661 1.14079 1.09736 1.19918 0.78904 0.87145 0.84451 1.90670 1.51327 1.16046 1.85029 1.19984 0.96818 0.87832 0.91347 1.21783 0.91298 1.02906 1.03032 1.58874 1.14628 1.11067 1.51529 1.20339 0.96949 0.96160 0.95984 1.20935 0.97213 1.00305 0.95810 1.21005 1.00050 0.95730 0.97246 1.21105 0.97352 0.95891 0.99931 1.21154 0.97586 0.99757 0.95494 1.21008 0.99512 0.93911 0.95476 0.96849 0.95465 0.89234 0.92716 0.76823 0.90694 0.91889 0.91367 0.83811 0.84062 0.86496 0.86323 0.86400 0.86179 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.83 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.69 -14.87 4.97 -54.93 -0.27 -15.14 16 13 C 0.51 10.46 6.62 -10.99 -0.07 10.39 16 14 O -0.55 -13.41 15.22 5.56 0.08 -13.32 16 15 C 0.14 2.04 0.99 -133.90 -0.13 1.91 16 16 C -0.13 -1.74 8.37 37.16 0.31 -1.43 16 17 N -0.83 -10.06 7.45 -1.13 -0.01 -10.07 16 18 C -0.09 -1.34 4.48 -104.62 -0.47 -1.81 16 19 C -0.12 -1.59 9.14 -39.58 -0.36 -1.96 16 20 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.08 -1.19 8.24 -39.59 -0.33 -1.51 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.40 7.81 7.89 -40.82 -0.32 7.48 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.92 6.79 -51.93 -0.35 0.57 16 32 H 0.35 4.20 7.50 -39.29 -0.29 3.91 16 33 H 0.35 3.31 8.82 -39.29 -0.35 2.96 16 34 H 0.12 1.26 6.24 -52.49 -0.33 0.93 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.84 6.85 -52.48 -0.36 1.48 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -31.22 314.17 -7.54 -38.76 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.21 Total: 13.51 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.47 Total: -9.70 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.35 Total: -49.86 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.22 -7.54 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052883121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.207 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds