Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47442 * 2 1 4 4 C 1.50705 * 109.47080 * 119.99919 * 2 1 3 5 5 H 1.07996 * 120.00211 * 119.99920 * 4 2 1 6 6 C 1.37879 * 119.99271 * 299.99857 * 4 2 1 7 7 N 1.31515 * 120.00719 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99523 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47172 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47181 * 120.00264 * 8 6 4 11 11 H 1.48503 * 109.47226 * 240.00060 * 8 6 4 12 12 N 1.46502 * 109.47249 * 239.99323 * 2 1 3 13 13 C 1.34776 * 119.99619 * 85.00535 * 12 2 1 14 14 O 1.21276 * 120.00265 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99762 * 179.72858 * 13 12 2 16 16 C 1.53005 * 109.46952 * 274.87283 * 15 13 12 17 17 N 1.46901 * 109.47487 * 34.86875 * 15 13 12 18 18 C 1.50704 * 109.47319 * 154.87583 * 15 13 12 19 19 C 1.38236 * 119.99933 * 252.59010 * 18 15 13 20 20 C 1.38236 * 120.00107 * 179.78624 * 19 18 15 21 21 C 1.38235 * 119.99957 * 0.44034 * 20 19 18 22 22 C 1.38238 * 119.99596 * 359.81421 * 21 20 19 23 23 C 1.38230 * 120.00024 * 72.86092 * 18 15 13 24 24 H 1.08995 * 109.46839 * 60.00420 * 1 2 3 25 25 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47157 * 300.00480 * 1 2 3 27 27 H 0.97001 * 120.00049 * 180.02562 * 7 6 4 28 28 H 0.96994 * 119.99941 * 265.00080 * 12 2 1 29 29 H 1.08997 * 109.47368 * 59.99928 * 16 15 13 30 30 H 1.09000 * 109.47385 * 180.02562 * 16 15 13 31 31 H 1.09003 * 109.47169 * 299.99919 * 16 15 13 32 32 H 1.00903 * 110.99486 * 60.00284 * 17 15 13 33 33 H 1.00901 * 111.00014 * 183.95315 * 17 15 13 34 34 H 1.08001 * 119.99450 * 359.97438 * 19 18 15 35 35 H 1.07996 * 119.99585 * 180.27333 * 20 19 18 36 36 H 1.07993 * 120.00001 * 179.83202 * 21 20 19 37 37 H 1.08002 * 119.99494 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.00171 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2862 3.6040 10 1 3.1471 -0.1855 4.8161 11 1 1.1677 -1.5863 4.8166 12 7 2.0184 -0.6908 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1582 -2.4117 15 6 2.6553 -0.7274 -3.5859 16 6 4.1854 -0.7185 -3.5838 17 7 2.1739 -2.1153 -3.5849 18 6 2.1506 -0.0215 -4.8180 19 6 1.1608 -0.6007 -5.5899 20 6 0.6948 0.0488 -6.7176 21 6 1.2249 1.2734 -7.0786 22 6 2.2184 1.8501 -6.3096 23 6 2.6814 1.2026 -5.1795 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7087 1.1615 3.4844 28 1 2.2491 -1.6318 -1.1524 29 1 4.5505 -1.2290 -2.6927 30 1 4.5530 -1.2309 -4.4728 31 1 4.5427 0.3113 -3.5846 32 1 1.1654 -2.1481 -3.5863 33 1 2.5535 -2.6303 -4.3651 34 1 0.7496 -1.5594 -5.3100 35 1 -0.0816 -0.4017 -7.3180 36 1 0.8627 1.7796 -7.9611 37 1 2.6329 2.8067 -6.5919 38 1 3.4575 1.6533 -4.5787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052883121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -35.363054 kcal Electronic energy + Delta-G solvation = -19877.018439 eV Core-core repulsion = 16911.122921 eV Total energy + Delta-G solvation = -2965.895518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47737 -39.63630 -36.85521 -36.47210 -34.21591 -32.14273 -31.21574 -30.59238 -29.69148 -27.34530 -25.45950 -23.60618 -23.25107 -21.89962 -20.62455 -18.86937 -18.21197 -17.61439 -17.16111 -16.68856 -16.33396 -15.90241 -15.54083 -15.27174 -14.90097 -14.71065 -14.39073 -14.35642 -13.84243 -13.53631 -13.22976 -13.13052 -12.96135 -12.92225 -12.83864 -12.72389 -12.28133 -12.11393 -12.07206 -11.82576 -11.09311 -10.75138 -10.57514 -9.90419 -9.81296 -9.70245 -9.62914 -8.16811 -6.34229 0.38482 0.50530 1.44804 1.45590 1.58297 1.79985 2.36387 2.59480 2.98628 3.13566 3.35071 3.63765 3.91396 4.01951 4.10062 4.24219 4.28284 4.58634 4.63113 4.72973 4.76761 4.83851 4.91179 5.04837 5.09583 5.12697 5.14545 5.43656 5.53606 5.58917 5.60595 5.63451 5.70878 5.88504 6.00921 6.10192 6.11110 6.49292 6.74224 7.04007 7.33690 7.60537 8.89700 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035785 B = 0.004732 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.272861 B = 5915.446809 C = 6109.407234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.688 5.688 13 C 0.508 3.492 14 O -0.596 6.596 15 C 0.153 3.847 16 C -0.130 4.130 17 N -0.822 5.822 18 C -0.113 4.113 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.008 0.992 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.350 0.650 33 H 0.365 0.635 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -6.186 -18.107 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.582 4.582 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.337 5.337 13 C 0.293 3.707 14 O -0.477 6.477 15 C 0.056 3.944 16 C -0.188 4.188 17 N -0.357 5.357 18 C -0.115 4.115 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.124 4.124 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.872 -5.345 -17.260 18.295 hybrid contribution -0.247 0.109 0.294 0.399 sum 2.626 -5.236 -16.966 17.949 Atomic orbital electron populations 1.21866 0.98375 0.99380 0.99296 1.18353 0.91084 0.91775 0.82255 0.98733 1.21560 1.32415 1.13417 0.90783 0.91026 1.25812 0.94862 0.95576 1.02338 1.70066 1.37121 1.24034 1.24508 0.85279 0.78113 0.78522 0.78305 1.18353 1.20931 1.20364 1.46212 1.63934 1.14419 1.09091 1.20912 0.77474 0.86808 0.85505 1.90641 1.52901 1.18292 1.85898 1.19684 0.97521 0.88659 0.88507 1.21791 0.90066 1.02682 1.04252 1.58793 1.14909 1.09357 1.52674 1.20384 0.98297 0.96566 0.96297 1.21230 0.96481 1.01216 0.95925 1.21428 1.00224 0.95631 0.96968 1.21506 0.96385 0.95941 1.00410 1.21430 0.98043 1.00487 0.95099 1.21092 1.00152 0.94661 0.96516 0.97318 0.94029 0.91551 0.92584 0.75497 0.91145 0.88856 0.92434 0.83550 0.81856 0.84506 0.83382 0.83518 0.84579 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.27 14.44 2.56 44.25 0.11 14.55 16 3 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 4 C -0.54 -29.53 8.73 25.60 0.22 -29.31 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.38 16 8 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.69 -29.97 4.97 -446.09 -2.22 -32.19 16 13 C 0.51 21.10 6.62 87.66 0.58 21.68 16 14 O -0.60 -30.22 15.22 -3.02 -0.05 -30.27 16 15 C 0.15 4.46 0.99 2.04 0.00 4.46 16 16 C -0.13 -3.33 8.37 71.98 0.60 -2.72 16 17 N -0.82 -18.31 7.45 -157.50 -1.17 -19.48 16 18 C -0.11 -3.21 4.48 -19.87 -0.09 -3.30 16 19 C -0.13 -3.06 9.14 22.27 0.20 -2.86 16 20 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 23 C -0.11 -3.13 8.24 22.27 0.18 -2.94 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 26 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.41 15.83 7.89 -92.71 -0.73 15.10 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.58 6.79 -2.39 -0.02 1.57 16 32 H 0.35 7.70 7.50 -89.69 -0.67 7.03 16 33 H 0.36 5.89 8.82 -89.69 -0.79 5.10 16 34 H 0.14 2.54 6.24 -2.91 -0.02 2.52 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.11 3.41 6.85 -2.91 -0.02 3.39 16 Total: -1.00 -69.51 314.17 1.34 -68.17 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -1.10 Total: 35.65 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 3.61 Total: -13.18 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.15 Total: -105.06 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -69.51 1.34 -68.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052883121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.811 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds