Wall clock time and date at job start Mon Mar 30 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47015 * 119.99649 * 9 7 5 12 12 H 1.48496 * 109.47036 * 240.00093 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 C 1.50698 * 109.47465 * 179.97438 * 15 13 3 17 17 C 1.38307 * 119.96071 * 269.72624 * 16 15 13 18 18 C 1.38260 * 120.14898 * 179.72653 * 17 16 15 19 19 C 1.38121 * 120.07388 * 0.54353 * 18 17 16 20 20 C 1.38890 * 119.92668 * 359.73203 * 19 18 17 21 21 N 1.39670 * 120.07802 * 179.97438 * 20 19 18 22 22 C 1.38077 * 119.96320 * 89.99402 * 16 15 13 23 23 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 27 27 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 28 28 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 29 29 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 30 30 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 31 31 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 32 32 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 33 33 H 1.08006 * 119.92631 * 359.97230 * 17 16 15 34 34 H 1.08001 * 119.96561 * 180.27516 * 18 17 16 35 35 H 1.08007 * 120.03938 * 179.75216 * 19 18 17 36 36 H 0.96997 * 120.00276 * 180.02562 * 21 20 19 37 37 H 0.97002 * 119.99951 * 0.02562 * 21 20 19 38 38 H 1.08006 * 120.03985 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.6008 1.2405 2.4170 11 1 6.6209 3.3964 3.5263 12 1 5.9201 1.4163 4.7381 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 6 2.3338 2.2241 -3.6177 17 6 1.3544 3.0417 -4.1517 18 6 1.6554 3.8929 -5.1989 19 6 2.9331 3.9210 -5.7227 20 6 3.9176 3.0971 -5.1925 21 7 5.2106 3.1226 -5.7201 22 6 3.6132 2.2472 -4.1365 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.0955 3.1410 1.1384 29 1 1.5817 1.6877 2.0284 30 1 3.6750 3.5155 4.4444 31 1 2.6328 0.4146 -2.5259 32 1 0.9548 1.0085 -2.5342 33 1 0.3533 3.0182 -3.7472 34 1 0.8895 4.5333 -5.6107 35 1 3.1666 4.5832 -6.5433 36 1 5.8972 2.5464 -5.3493 37 1 5.4220 3.7165 -6.4573 38 1 4.3765 1.6055 -3.7216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052923252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:55 Heat of formation + Delta-G solvation = -18.501362 kcal Electronic energy + Delta-G solvation = -19440.342974 eV Core-core repulsion = 16475.178634 eV Total energy + Delta-G solvation = -2965.164340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60974 -38.47609 -35.25189 -34.52232 -32.84073 -32.00277 -30.03078 -28.78849 -27.87560 -26.26506 -23.03373 -22.76144 -22.09911 -20.98665 -18.26247 -16.80273 -16.61377 -16.43905 -16.18183 -15.70122 -15.22560 -14.69389 -14.21674 -13.77665 -13.48083 -13.31961 -13.13985 -12.78580 -12.65398 -12.42361 -11.96983 -11.71733 -11.45573 -11.25364 -11.07365 -10.87991 -10.79211 -10.66176 -10.45780 -10.38922 -10.09129 -9.57260 -8.90765 -8.43201 -8.39932 -7.58345 -7.36299 -6.00917 -4.05213 1.65029 1.87233 3.31144 3.38471 3.42007 3.54457 3.87953 3.99432 4.25222 4.48380 4.96226 5.09699 5.26924 5.34018 5.35404 5.42258 5.49741 5.65446 5.70094 5.73811 5.81843 5.86778 6.05740 6.13047 6.20399 6.28089 6.50732 6.53655 6.73612 6.94614 7.06626 7.15324 7.50874 7.61678 7.62456 7.82038 7.96404 8.28385 8.51015 8.95454 9.19933 9.59905 11.07193 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.005463 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.140809 B = 5124.049030 C = 6030.892716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.508 3.492 14 O -0.532 6.532 15 C -0.107 4.107 16 C -0.007 4.007 17 C -0.164 4.164 18 C -0.073 4.073 19 C -0.205 4.205 20 C 0.213 3.787 21 N -0.882 5.882 22 C -0.180 4.180 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.396 0.604 37 H 0.394 0.606 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -5.359 -16.629 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.294 3.706 14 O -0.408 6.408 15 C -0.147 4.147 16 C -0.008 4.008 17 C -0.184 4.184 18 C -0.092 4.092 19 C -0.228 4.228 20 C 0.109 3.891 21 N -0.422 5.422 22 C -0.203 4.203 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.224 0.776 37 H 0.222 0.778 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.052 -4.641 -16.407 17.322 hybrid contribution 1.362 -0.144 0.385 1.423 sum -1.690 -4.785 -16.022 16.807 Atomic orbital electron populations 1.22224 0.96882 1.01330 1.02324 1.21407 0.93472 0.84338 1.02589 1.48257 1.64045 1.13268 1.07678 1.19247 0.96149 0.93664 0.78237 1.21486 0.96998 1.31620 1.06099 0.92505 1.24936 0.97770 0.94996 0.96457 1.69946 1.35552 1.33632 1.14324 0.86463 0.84787 0.78020 0.78272 1.19862 1.20919 1.20979 1.20143 0.78755 0.87025 0.84696 1.90695 1.45092 1.17957 1.87080 1.20822 1.03492 0.98406 0.91978 1.19088 0.92976 0.95239 0.93493 1.20710 0.99292 0.99305 0.99063 1.20754 0.95639 0.97181 0.95634 1.20464 0.93642 1.04084 1.04597 1.17685 0.85251 0.93748 0.92374 1.42409 1.09135 1.49365 1.41254 1.20380 0.96975 1.03697 0.99251 0.92240 0.92093 0.93028 0.91733 0.90084 0.93958 0.95094 0.92833 0.88761 0.88660 0.86714 0.86461 0.86816 0.77582 0.77814 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.70 5.94 -4.04 -0.02 1.68 16 3 N -0.60 -12.84 2.46 -175.05 -0.43 -13.27 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -15.06 9.38 -34.44 -0.32 -15.38 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.82 7.67 -10.99 -0.08 10.74 16 14 O -0.53 -13.93 15.62 5.55 0.09 -13.85 16 15 C -0.11 -1.66 4.38 -29.03 -0.13 -1.79 16 16 C -0.01 -0.11 4.37 -104.66 -0.46 -0.57 16 17 C -0.16 -2.47 9.69 -39.55 -0.38 -2.86 16 18 C -0.07 -1.00 10.04 -39.62 -0.40 -1.40 16 19 C -0.21 -2.73 9.90 -39.38 -0.39 -3.12 16 20 C 0.21 2.97 6.75 -83.79 -0.57 2.40 16 21 N -0.88 -9.24 9.09 32.41 0.29 -8.94 16 22 C -0.18 -2.82 9.55 -39.38 -0.38 -3.19 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.65 7.26 -51.92 -0.38 0.28 16 26 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.04 1.28 7.43 -51.93 -0.39 0.89 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.28 7.34 -51.92 -0.38 0.89 16 32 H 0.10 1.23 7.16 -51.93 -0.37 0.86 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.40 3.65 8.84 -40.82 -0.36 3.29 16 37 H 0.39 3.21 8.84 -40.82 -0.36 2.85 16 38 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -34.90 323.91 -7.82 -42.72 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.49 Total: 4.79 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.87 Total: -7.20 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.60 Total: -48.47 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.90 -7.82 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052923252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.217 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds