Wall clock time and date at job start Mon Mar 30 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47015 * 119.99649 * 9 7 5 12 12 H 1.48496 * 109.47036 * 240.00093 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 C 1.50698 * 109.47465 * 179.97438 * 15 13 3 17 17 C 1.38307 * 119.96071 * 269.72624 * 16 15 13 18 18 C 1.38260 * 120.14898 * 179.72653 * 17 16 15 19 19 C 1.38121 * 120.07388 * 0.54353 * 18 17 16 20 20 C 1.38890 * 119.92668 * 359.73203 * 19 18 17 21 21 N 1.39670 * 120.07802 * 179.97438 * 20 19 18 22 22 C 1.38077 * 119.96320 * 89.99402 * 16 15 13 23 23 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 27 27 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 28 28 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 29 29 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 30 30 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 31 31 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 32 32 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 33 33 H 1.08006 * 119.92631 * 359.97230 * 17 16 15 34 34 H 1.08001 * 119.96561 * 180.27516 * 18 17 16 35 35 H 1.08007 * 120.03938 * 179.75216 * 19 18 17 36 36 H 0.96997 * 120.00276 * 180.02562 * 21 20 19 37 37 H 0.97002 * 119.99951 * 0.02562 * 21 20 19 38 38 H 1.08006 * 120.03985 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.6008 1.2405 2.4170 11 1 6.6209 3.3964 3.5263 12 1 5.9201 1.4163 4.7381 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 6 2.3338 2.2241 -3.6177 17 6 1.3544 3.0417 -4.1517 18 6 1.6554 3.8929 -5.1989 19 6 2.9331 3.9210 -5.7227 20 6 3.9176 3.0971 -5.1925 21 7 5.2106 3.1226 -5.7201 22 6 3.6132 2.2472 -4.1365 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.0955 3.1410 1.1384 29 1 1.5817 1.6877 2.0284 30 1 3.6750 3.5155 4.4444 31 1 2.6328 0.4146 -2.5259 32 1 0.9548 1.0085 -2.5342 33 1 0.3533 3.0182 -3.7472 34 1 0.8895 4.5333 -5.6107 35 1 3.1666 4.5832 -6.5433 36 1 5.8972 2.5464 -5.3493 37 1 5.4220 3.7165 -6.4573 38 1 4.3765 1.6055 -3.7216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052923252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:55 Heat of formation + Delta-G solvation = -41.917170 kcal Electronic energy + Delta-G solvation = -19441.358360 eV Core-core repulsion = 16475.178634 eV Total energy + Delta-G solvation = -2966.179725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99607 -39.81216 -36.91720 -35.59971 -34.90382 -33.23198 -31.56240 -30.00554 -29.29014 -27.90079 -24.94127 -24.11591 -23.19520 -22.19663 -19.84490 -18.62008 -17.89686 -17.79453 -17.59679 -17.02035 -16.67195 -16.26499 -15.93958 -15.05731 -14.71202 -14.53535 -14.51623 -14.29337 -13.99200 -13.75408 -13.54612 -13.26063 -13.08967 -12.81380 -12.68734 -12.50038 -12.23859 -12.13834 -11.90888 -11.74358 -11.67431 -11.40835 -10.65104 -10.57870 -9.59959 -9.39384 -8.35082 -8.22201 -6.37079 0.54471 0.79273 1.34801 1.37465 1.49189 1.90754 2.32891 2.48248 3.03239 3.07070 3.10709 3.78328 3.97545 4.04981 4.20935 4.31439 4.40784 4.49434 4.57131 4.64007 4.68974 4.78536 4.96543 5.02512 5.07704 5.08664 5.15775 5.25691 5.43228 5.45753 5.59569 5.67664 5.84609 5.89405 6.07363 6.07871 6.65776 6.71417 6.85490 7.05463 7.29303 7.55474 8.85023 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.005463 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.140809 B = 5124.049030 C = 6030.892716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.500 3.500 14 O -0.592 6.592 15 C -0.090 4.090 16 C -0.029 4.029 17 C -0.184 4.184 18 C -0.077 4.077 19 C -0.212 4.212 20 C 0.206 3.794 21 N -0.871 5.871 22 C -0.206 4.206 23 H 0.096 0.904 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.070 0.930 28 H -0.007 1.007 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.403 0.597 37 H 0.407 0.593 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -6.796 -18.276 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.289 3.711 14 O -0.473 6.473 15 C -0.130 4.130 16 C -0.030 4.030 17 C -0.204 4.204 18 C -0.096 4.096 19 C -0.234 4.234 20 C 0.101 3.899 21 N -0.411 5.411 22 C -0.228 4.228 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.011 0.989 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.231 0.769 37 H 0.237 0.763 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.592 -6.130 -18.082 19.268 hybrid contribution 1.200 0.338 0.850 1.509 sum -1.392 -5.792 -17.232 18.233 Atomic orbital electron populations 1.22159 0.94587 1.03517 1.01688 1.21768 0.95351 0.81318 1.03954 1.48295 1.64057 1.15199 1.06088 1.18676 0.95244 0.91417 0.80607 1.21747 0.97905 1.31791 1.06415 0.92921 1.25877 1.02426 0.94502 0.96467 1.70066 1.37729 1.34368 1.14817 0.85366 0.78989 0.77976 0.78461 1.19060 1.20868 1.19262 1.21182 0.77159 0.86542 0.86243 1.90654 1.47765 1.20800 1.88072 1.20776 1.05886 0.98293 0.88023 1.19259 0.93615 0.96158 0.93960 1.20953 0.99658 0.99881 0.99950 1.21124 0.96573 0.96849 0.95021 1.20831 0.93400 1.04087 1.05095 1.17871 0.86623 0.93351 0.92030 1.42383 1.08133 1.49392 1.41230 1.20549 0.97039 1.04833 1.00427 0.88555 0.94483 0.91949 0.87949 0.91115 0.98864 0.96094 0.92448 0.86308 0.85560 0.86010 0.83921 0.84249 0.76864 0.76332 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.10 3.01 5.94 86.38 0.51 3.52 16 3 N -0.61 -26.25 2.46 -826.14 -2.03 -28.28 16 4 C 0.26 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -31.93 9.38 25.60 0.24 -31.69 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 9 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.50 21.54 7.67 87.66 0.67 22.21 16 14 O -0.59 -32.32 15.62 -3.04 -0.05 -32.37 16 15 C -0.09 -2.67 4.38 29.10 0.13 -2.55 16 16 C -0.03 -0.91 4.37 -19.89 -0.09 -0.99 16 17 C -0.18 -5.40 9.69 22.29 0.22 -5.18 16 18 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 19 C -0.21 -5.22 9.90 22.40 0.22 -5.00 16 20 C 0.21 5.48 6.75 38.22 0.26 5.74 16 21 N -0.87 -16.74 9.09 -51.37 -0.47 -17.21 16 22 C -0.21 -6.29 9.55 22.40 0.21 -6.08 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.41 7.26 -2.38 -0.02 1.40 16 26 H 0.10 2.37 6.43 -2.39 -0.02 2.36 16 27 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 28 H -0.01 -0.44 7.43 -2.39 -0.02 -0.46 16 29 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.12 2.90 7.34 -2.38 -0.02 2.88 16 32 H 0.13 2.91 7.16 -2.39 -0.02 2.89 16 33 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.40 6.82 8.84 -92.71 -0.82 6.00 16 37 H 0.41 5.72 8.84 -92.71 -0.82 4.90 16 38 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -79.37 323.91 3.44 -75.93 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.57 Total: 20.54 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.24 Total: -9.17 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -2.21 Total: -102.74 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.37 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -79.37 3.44 -75.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052923252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.017 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds