Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47075 * 2 1 4 4 C 1.46494 * 120.00084 * 95.11804 * 3 2 1 5 5 C 1.50701 * 109.47365 * 269.99627 * 4 3 2 6 6 H 1.08001 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00517 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99562 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00328 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47469 * 90.00193 * 9 7 5 11 11 H 1.48503 * 109.47191 * 209.99958 * 9 7 5 12 12 H 1.48508 * 109.47199 * 330.00117 * 9 7 5 13 13 C 1.34783 * 119.99820 * 275.11358 * 3 2 1 14 14 O 1.21605 * 119.99846 * 174.48704 * 13 3 2 15 15 C 1.47426 * 120.00187 * 354.49916 * 13 3 2 16 16 C 1.39740 * 120.20348 * 304.96159 * 15 13 3 17 17 C 1.37754 * 119.92213 * 179.72340 * 16 15 13 18 18 C 1.50698 * 119.82014 * 180.27890 * 17 16 15 19 19 C 1.38606 * 120.35621 * 0.55739 * 17 16 15 20 20 C 1.37965 * 120.42131 * 359.71887 * 19 17 16 21 21 C 1.38956 * 120.06108 * 0.02562 * 20 19 17 22 22 N 1.38882 * 120.17297 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47180 * 59.99968 * 1 2 3 24 24 H 1.08992 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46679 * 300.00006 * 1 2 3 26 26 H 1.09003 * 109.47102 * 240.00142 * 2 1 3 27 27 H 1.08998 * 109.47180 * 120.00032 * 2 1 3 28 28 H 1.09002 * 109.47211 * 29.99753 * 4 3 2 29 29 H 1.09006 * 109.47342 * 149.99666 * 4 3 2 30 30 H 0.97003 * 120.00009 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.03626 * 359.97438 * 16 15 13 32 32 H 1.09002 * 109.46911 * 270.27869 * 18 17 16 33 33 H 1.08999 * 109.47627 * 30.27735 * 18 17 16 34 34 H 1.09001 * 109.47261 * 150.28015 * 18 17 16 35 35 H 1.07997 * 119.78960 * 179.69847 * 19 17 16 36 36 H 1.07994 * 119.96706 * 179.97438 * 20 19 17 37 37 H 0.97000 * 119.99459 * 174.99077 * 22 21 20 38 38 H 0.96994 * 119.99917 * 354.98744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3692 2.0341 1.2636 5 6 1.1553 2.7298 1.8237 6 1 0.2163 2.6892 1.2917 7 6 1.2432 3.4171 3.0156 8 7 2.3866 3.4660 3.6636 9 14 -0.2615 4.2788 3.7101 10 1 -1.0054 3.3429 4.5910 11 1 0.1655 5.4643 4.4959 12 1 -1.1411 4.7142 2.5955 13 6 2.1449 2.0512 -1.1626 14 8 2.4536 3.2274 -1.1560 15 6 1.9088 1.3583 -2.4423 16 6 2.6137 0.1917 -2.7506 17 6 2.3843 -0.4542 -3.9454 18 6 3.1413 -1.7155 -4.2728 19 6 1.4654 0.0528 -4.8507 20 6 0.7655 1.2066 -4.5637 21 6 0.9793 1.8694 -3.3612 22 7 0.2765 3.0314 -3.0701 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.7192 1.2855 1.9744 29 1 3.1583 2.7653 1.0880 30 1 2.4486 3.9499 4.5021 31 1 3.3345 -0.2051 -2.0510 32 1 4.0654 -1.4604 -4.7914 33 1 3.3769 -2.2476 -3.3511 34 1 2.5291 -2.3510 -4.9128 35 1 1.2963 -0.4584 -5.7869 36 1 0.0515 1.5954 -5.2745 37 1 0.3733 3.4519 -2.2014 38 1 -0.3110 3.4224 -3.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053004310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -18.205904 kcal Electronic energy + Delta-G solvation = -20079.625586 eV Core-core repulsion = 17114.474059 eV Total energy + Delta-G solvation = -2965.151528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01006 -37.98000 -35.45954 -34.64585 -32.78812 -30.95542 -30.64482 -29.91406 -27.09257 -25.67644 -24.03954 -22.78073 -22.24124 -21.11317 -18.44535 -16.90094 -16.80964 -16.49789 -16.32644 -15.42124 -14.47436 -14.20714 -14.08204 -13.78736 -13.65405 -13.57987 -13.06033 -12.83834 -12.51599 -12.20409 -12.13226 -12.01645 -11.60556 -11.42588 -11.17224 -11.01522 -10.90604 -10.68603 -10.49645 -10.16840 -10.00997 -9.56813 -8.97252 -8.62509 -8.41738 -7.62735 -7.24064 -6.02932 -4.06844 1.38561 1.74671 3.29677 3.35962 3.38268 3.43556 3.88978 4.10572 4.18528 4.45319 4.94044 5.05261 5.08988 5.31219 5.35417 5.45990 5.56734 5.68271 5.71208 5.79182 5.84090 5.95263 6.06850 6.11982 6.21454 6.38751 6.40937 6.48657 6.77046 6.79791 7.00878 7.10896 7.44416 7.57583 7.69014 7.93532 7.97129 8.25390 8.46298 8.91498 9.11386 9.57734 11.05249 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.005724 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.477189 B = 4890.515799 C = 5211.731931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.554 3.446 14 O -0.541 6.541 15 C -0.192 4.192 16 C -0.041 4.041 17 C -0.160 4.160 18 C -0.102 4.102 19 C -0.059 4.059 20 C -0.206 4.206 21 C 0.257 3.743 22 N -0.863 5.863 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.410 0.590 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -9.905 -14.754 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.341 3.659 14 O -0.419 6.419 15 C -0.201 4.201 16 C -0.060 4.060 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.078 4.078 20 C -0.229 4.229 21 C 0.148 3.852 22 N -0.400 5.400 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.241 0.759 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.558 -9.213 -14.516 17.382 hybrid contribution -1.102 0.828 0.601 1.503 sum -3.660 -8.385 -13.915 16.653 Atomic orbital electron populations 1.22157 0.96494 1.00832 1.02831 1.21570 0.94586 0.83780 1.01966 1.48214 1.62794 1.13225 1.07801 1.19320 0.96768 0.93066 0.78232 1.21414 0.96279 1.32417 1.05752 0.92418 1.24933 0.96117 0.96272 0.96842 1.69933 1.24391 1.42711 1.16432 0.86528 0.82887 0.79219 0.78945 1.20696 1.21142 1.20007 1.18031 0.78177 0.86344 0.83391 1.90761 1.48358 1.15446 1.87361 1.19598 1.03391 0.99906 0.97169 1.20843 0.97009 0.92306 0.95865 1.19475 1.01634 0.99426 0.95642 1.20623 0.99246 0.94325 1.01659 1.20757 0.94392 0.94631 0.98026 1.20467 1.06061 0.99132 0.97216 1.17619 0.89177 0.86252 0.92151 1.42531 1.50087 1.27080 1.20331 0.93381 0.92886 0.91089 0.91194 0.90752 0.94978 0.94011 0.92778 0.85783 0.92036 0.91989 0.92161 0.86357 0.86175 0.75869 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.20 37.16 0.38 -2.35 16 2 C 0.10 1.81 5.94 -4.04 -0.02 1.78 16 3 N -0.59 -12.76 2.47 -176.33 -0.43 -13.20 16 4 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 5 C -0.52 -14.59 9.19 -34.44 -0.32 -14.91 16 6 H 0.06 1.62 7.41 -52.49 -0.39 1.23 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.55 12.05 6.35 -12.52 -0.08 11.97 16 14 O -0.54 -13.90 15.64 5.27 0.08 -13.82 16 15 C -0.19 -3.38 4.88 -104.80 -0.51 -3.89 16 16 C -0.04 -0.61 7.24 -39.20 -0.28 -0.89 16 17 C -0.16 -1.98 5.87 -104.66 -0.61 -2.60 16 18 C -0.10 -0.95 10.00 36.00 0.36 -0.59 16 19 C -0.06 -0.69 9.68 -39.55 -0.38 -1.08 16 20 C -0.21 -2.64 9.88 -39.42 -0.39 -3.03 16 21 C 0.26 4.05 6.75 -83.61 -0.56 3.49 16 22 N -0.86 -12.96 8.91 32.55 0.29 -12.67 16 23 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 26 H 0.07 1.04 4.52 -51.93 -0.23 0.81 16 27 H 0.07 1.23 7.83 -51.93 -0.41 0.83 16 28 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.12 1.74 7.37 -52.49 -0.39 1.35 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.41 7.30 7.00 -40.82 -0.29 7.02 16 38 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -32.52 318.55 -7.43 -39.96 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.34 Total: 8.05 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.55 Total: -4.08 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.59 Total: -51.73 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.52 -7.43 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053004310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.751 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds