Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47075 * 2 1 4 4 C 1.46494 * 120.00084 * 95.11804 * 3 2 1 5 5 C 1.50701 * 109.47365 * 269.99627 * 4 3 2 6 6 H 1.08001 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00517 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99562 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00328 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47469 * 90.00193 * 9 7 5 11 11 H 1.48503 * 109.47191 * 209.99958 * 9 7 5 12 12 H 1.48508 * 109.47199 * 330.00117 * 9 7 5 13 13 C 1.34783 * 119.99820 * 275.11358 * 3 2 1 14 14 O 1.21605 * 119.99846 * 174.48704 * 13 3 2 15 15 C 1.47426 * 120.00187 * 354.49916 * 13 3 2 16 16 C 1.39740 * 120.20348 * 304.96159 * 15 13 3 17 17 C 1.37754 * 119.92213 * 179.72340 * 16 15 13 18 18 C 1.50698 * 119.82014 * 180.27890 * 17 16 15 19 19 C 1.38606 * 120.35621 * 0.55739 * 17 16 15 20 20 C 1.37965 * 120.42131 * 359.71887 * 19 17 16 21 21 C 1.38956 * 120.06108 * 0.02562 * 20 19 17 22 22 N 1.38882 * 120.17297 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47180 * 59.99968 * 1 2 3 24 24 H 1.08992 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46679 * 300.00006 * 1 2 3 26 26 H 1.09003 * 109.47102 * 240.00142 * 2 1 3 27 27 H 1.08998 * 109.47180 * 120.00032 * 2 1 3 28 28 H 1.09002 * 109.47211 * 29.99753 * 4 3 2 29 29 H 1.09006 * 109.47342 * 149.99666 * 4 3 2 30 30 H 0.97003 * 120.00009 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.03626 * 359.97438 * 16 15 13 32 32 H 1.09002 * 109.46911 * 270.27869 * 18 17 16 33 33 H 1.08999 * 109.47627 * 30.27735 * 18 17 16 34 34 H 1.09001 * 109.47261 * 150.28015 * 18 17 16 35 35 H 1.07997 * 119.78960 * 179.69847 * 19 17 16 36 36 H 1.07994 * 119.96706 * 179.97438 * 20 19 17 37 37 H 0.97000 * 119.99459 * 174.99077 * 22 21 20 38 38 H 0.96994 * 119.99917 * 354.98744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3692 2.0341 1.2636 5 6 1.1553 2.7298 1.8237 6 1 0.2163 2.6892 1.2917 7 6 1.2432 3.4171 3.0156 8 7 2.3866 3.4660 3.6636 9 14 -0.2615 4.2788 3.7101 10 1 -1.0054 3.3429 4.5910 11 1 0.1655 5.4643 4.4959 12 1 -1.1411 4.7142 2.5955 13 6 2.1449 2.0512 -1.1626 14 8 2.4536 3.2274 -1.1560 15 6 1.9088 1.3583 -2.4423 16 6 2.6137 0.1917 -2.7506 17 6 2.3843 -0.4542 -3.9454 18 6 3.1413 -1.7155 -4.2728 19 6 1.4654 0.0528 -4.8507 20 6 0.7655 1.2066 -4.5637 21 6 0.9793 1.8694 -3.3612 22 7 0.2765 3.0314 -3.0701 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.7192 1.2855 1.9744 29 1 3.1583 2.7653 1.0880 30 1 2.4486 3.9499 4.5021 31 1 3.3345 -0.2051 -2.0510 32 1 4.0654 -1.4604 -4.7914 33 1 3.3769 -2.2476 -3.3511 34 1 2.5291 -2.3510 -4.9128 35 1 1.2963 -0.4584 -5.7869 36 1 0.0515 1.5954 -5.2745 37 1 0.3733 3.4519 -2.2014 38 1 -0.3110 3.4224 -3.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053004310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = -39.564632 kcal Electronic energy + Delta-G solvation = -20080.551770 eV Core-core repulsion = 17114.474059 eV Total energy + Delta-G solvation = -2966.077712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38716 -39.38692 -37.07358 -35.85831 -34.88913 -32.27212 -31.60151 -31.47972 -29.04168 -26.65924 -25.61999 -24.47845 -23.56345 -22.36397 -19.92004 -18.70660 -18.06780 -17.93014 -17.82239 -17.19693 -16.28309 -15.67011 -15.29133 -15.04228 -14.86407 -14.57337 -14.44681 -14.34040 -14.18289 -13.75544 -13.41877 -13.29588 -13.02206 -12.86003 -12.75638 -12.61149 -12.49291 -12.20614 -12.04265 -11.82577 -11.66189 -11.16904 -10.63778 -10.62594 -9.81992 -9.41812 -8.35187 -8.21659 -6.35222 0.25664 0.69222 1.34658 1.37302 1.47357 1.84123 2.31371 2.45195 2.93235 2.98954 3.07620 3.70908 3.97567 4.13466 4.18992 4.42548 4.47998 4.50925 4.59411 4.71909 4.86197 4.91296 4.97391 5.02031 5.02979 5.11210 5.19255 5.30599 5.36374 5.40779 5.47590 5.59946 5.78836 5.85653 6.02337 6.06807 6.47884 6.68951 6.75876 6.91179 7.27583 7.45274 8.85558 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.005724 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.477189 B = 4890.515799 C = 5211.731931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.594 5.594 4 C 0.260 3.740 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.551 3.449 14 O -0.595 6.595 15 C -0.222 4.222 16 C -0.052 4.052 17 C -0.152 4.152 18 C -0.101 4.101 19 C -0.049 4.049 20 C -0.199 4.199 21 C 0.239 3.761 22 N -0.865 5.865 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.266 0.734 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.394 0.606 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -12.058 -17.034 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 N -0.323 5.323 4 C 0.139 3.861 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.341 3.659 14 O -0.478 6.478 15 C -0.230 4.230 16 C -0.071 4.071 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.067 4.067 20 C -0.222 4.222 21 C 0.130 3.870 22 N -0.403 5.403 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.222 0.778 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.136 -11.423 -16.834 20.760 hybrid contribution -0.568 1.426 1.201 1.949 sum -4.704 -9.997 -15.633 19.143 Atomic orbital electron populations 1.22057 0.95610 1.02656 1.00998 1.21852 0.95264 0.81463 1.03593 1.48200 1.62883 1.14842 1.06415 1.18809 0.95085 0.92019 0.80201 1.21622 0.96443 1.32856 1.06031 0.92922 1.25831 0.99262 0.96876 0.97172 1.70055 1.26494 1.43491 1.16907 0.85447 0.79061 0.78237 0.78242 1.18952 1.20668 1.19830 1.18766 0.76587 0.85839 0.84724 1.90706 1.50722 1.18054 1.88290 1.19334 1.06386 1.01670 0.95612 1.20924 0.97006 0.91822 0.97350 1.19854 1.01273 0.99937 0.94357 1.20698 0.99567 0.93019 1.02517 1.21263 0.92671 0.93783 0.98999 1.20832 1.06209 0.98991 0.96127 1.17931 0.89340 0.86688 0.93060 1.42519 1.50584 1.27223 1.19936 0.93968 0.89126 0.94052 0.88268 0.90314 0.95796 0.98565 0.92486 0.85780 0.91204 0.91555 0.89860 0.82404 0.83307 0.77828 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 10.20 71.98 0.73 -4.29 16 2 C 0.10 3.45 5.94 86.38 0.51 3.97 16 3 N -0.59 -26.88 2.47 -830.03 -2.05 -28.93 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.53 -31.07 9.19 25.60 0.24 -30.83 16 6 H 0.05 3.07 7.41 -2.91 -0.02 3.04 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.55 25.16 6.35 86.66 0.55 25.71 16 14 O -0.60 -32.74 15.64 -4.05 -0.06 -32.80 16 15 C -0.22 -7.80 4.88 -19.98 -0.10 -7.90 16 16 C -0.05 -1.47 7.24 22.52 0.16 -1.31 16 17 C -0.15 -3.24 5.87 -19.89 -0.12 -3.35 16 18 C -0.10 -1.46 10.00 71.24 0.71 -0.75 16 19 C -0.05 -0.92 9.68 22.29 0.22 -0.70 16 20 C -0.20 -4.43 9.88 22.38 0.22 -4.21 16 21 C 0.24 7.30 6.75 38.71 0.26 7.56 16 22 N -0.87 -26.20 8.91 -50.94 -0.45 -26.65 16 23 H 0.04 1.40 8.05 -2.39 -0.02 1.38 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.57 7.54 -2.39 -0.02 1.55 16 26 H 0.10 2.84 4.52 -2.39 -0.01 2.83 16 27 H 0.08 2.61 7.83 -2.39 -0.02 2.59 16 28 H 0.02 1.35 7.86 -2.39 -0.02 1.33 16 29 H 0.00 -0.24 7.50 -2.38 -0.02 -0.26 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.12 3.38 7.37 -2.91 -0.02 3.36 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.39 14.74 7.00 -92.71 -0.65 14.09 16 38 H 0.41 9.15 8.84 -92.71 -0.82 8.33 16 Total: -1.00 -74.95 318.55 3.65 -71.29 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.39 Total: 26.45 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.30 Total: -0.29 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -2.22 Total: -112.28 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.06 Total: -32.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.95 3.65 -71.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053004310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.729 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds