Wall clock time and date at job start Mon Mar 30 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47438 * 2 1 4 4 C 1.50701 * 109.47204 * 239.99938 * 2 1 3 5 5 O 1.21286 * 119.99792 * 265.39467 * 4 2 1 6 6 N 1.34768 * 120.00258 * 85.39361 * 4 2 1 7 7 C 1.46502 * 120.00349 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47090 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.46999 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00210 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00318 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99682 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46969 * 89.99916 * 13 11 9 15 15 H 1.48497 * 109.46814 * 209.99843 * 13 11 9 16 16 H 1.48499 * 109.47175 * 330.00161 * 13 11 9 17 17 C 1.50706 * 109.46868 * 120.00103 * 2 1 3 18 18 C 1.38235 * 119.99886 * 226.72879 * 17 2 1 19 19 C 1.38229 * 120.00366 * 179.78629 * 18 17 2 20 20 C 1.38243 * 119.99657 * 0.44489 * 19 18 17 21 21 C 1.38236 * 119.99675 * 359.81374 * 20 19 18 22 22 C 1.38228 * 120.00048 * 47.00476 * 17 2 1 23 23 H 1.09005 * 109.47095 * 300.00376 * 1 2 3 24 24 H 1.09001 * 109.47091 * 60.00102 * 1 2 3 25 25 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 26 26 H 1.00900 * 111.00309 * 56.04631 * 3 2 1 27 27 H 1.00900 * 111.00648 * 179.97438 * 3 2 1 28 28 H 0.97003 * 119.99816 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.46394 * 299.99895 * 7 6 4 30 30 H 1.08996 * 109.47196 * 60.00088 * 7 6 4 31 31 H 1.08996 * 109.47003 * 299.99873 * 8 7 6 32 32 H 1.08996 * 109.47174 * 59.99898 * 8 7 6 33 33 H 0.96998 * 120.00265 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.99599 * 0.02562 * 18 17 2 35 35 H 1.07994 * 120.00822 * 180.27628 * 19 18 17 36 36 H 1.07998 * 120.00075 * 179.82967 * 20 19 18 37 37 H 1.08007 * 119.99615 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00481 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3140 -1.8889 -1.1777 6 7 2.1686 -0.0363 -2.3894 7 6 2.6564 -0.7270 -3.5857 8 6 2.7179 0.2587 -4.7543 9 6 3.2203 -0.4517 -5.9848 10 1 3.4703 -1.5014 -5.9381 11 6 3.3598 0.2380 -7.1704 12 7 3.7978 -0.3821 -8.2443 13 14 2.9268 2.0533 -7.2514 14 1 4.1279 2.8637 -6.9263 15 1 2.4580 2.3898 -8.6197 16 1 1.8501 2.3495 -6.2724 17 6 2.0323 -0.7105 1.2305 18 6 3.0363 -0.1447 1.9938 19 6 3.4940 -0.7941 3.1250 20 6 2.9540 -2.0139 3.4877 21 6 1.9537 -2.5822 2.7214 22 6 1.4929 -1.9306 1.5927 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6442 1.9012 0.7813 27 1 3.0283 1.4119 0.0004 28 1 1.9437 0.9064 -2.4315 29 1 3.6527 -1.1255 -3.3942 30 1 1.9797 -1.5444 -3.8347 31 1 1.7218 0.6576 -4.9459 32 1 3.3948 1.0758 -4.5052 33 1 3.8956 0.1031 -9.0786 34 1 3.4604 0.8068 1.7085 35 1 4.2753 -0.3500 3.7238 36 1 3.3135 -2.5227 4.3699 37 1 1.5321 -3.5355 3.0046 38 1 0.7113 -2.3746 0.9941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:37 Heat of formation + Delta-G solvation = -16.376198 kcal Electronic energy + Delta-G solvation = -19321.805271 eV Core-core repulsion = 16356.733085 eV Total energy + Delta-G solvation = -2965.072186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50648 -38.61247 -35.73633 -34.93691 -32.72483 -31.36587 -30.43453 -29.86263 -28.95661 -25.40164 -23.94016 -22.48597 -21.82288 -20.69416 -19.39049 -17.43256 -17.11819 -16.85152 -15.94604 -15.55827 -14.98618 -14.70115 -14.53004 -14.20393 -14.04771 -13.65154 -13.56243 -13.28539 -12.68100 -12.58563 -12.34724 -12.18668 -12.12891 -11.45399 -11.33525 -11.17185 -11.04386 -10.35357 -10.24125 -9.93354 -9.61989 -9.31026 -9.08806 -9.00914 -8.83015 -8.60880 -8.45108 -6.08779 -4.08760 1.17962 1.29999 2.90375 3.27929 3.35528 3.37690 3.47927 3.84828 4.13434 4.40433 4.47725 4.68705 4.82878 4.94853 4.95522 5.11327 5.24381 5.32714 5.40744 5.54831 5.61850 5.80918 5.90161 5.93767 6.15670 6.23667 6.30729 6.35834 6.39375 6.59754 6.72123 6.84157 6.86182 7.08663 7.19600 7.27371 7.69614 8.01532 8.46058 8.63662 8.95539 9.51564 11.04278 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036052 B = 0.003989 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.475490 B = 7017.532588 C = 7235.186555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.140 3.860 3 N -0.831 5.831 4 C 0.518 3.482 5 O -0.543 6.543 6 N -0.710 5.710 7 C 0.128 3.872 8 C -0.021 4.021 9 C -0.522 4.522 10 H 0.075 0.925 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.882 3.118 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.098 4.098 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.081 4.081 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.350 0.650 27 H 0.349 0.651 28 H 0.405 0.595 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 3.352 23.644 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 N -0.364 5.364 4 C 0.301 3.699 5 O -0.419 6.419 6 N -0.360 5.360 7 C 0.006 3.994 8 C -0.059 4.059 9 C -0.561 4.561 10 H 0.093 0.907 11 C -0.133 4.133 12 N -0.538 5.538 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.099 4.099 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.240 0.760 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.592 2.601 22.720 23.542 hybrid contribution 0.300 1.106 0.666 1.325 sum -5.292 3.707 23.386 24.262 Atomic orbital electron populations 1.21810 0.90942 1.03096 1.03353 1.19903 0.97005 0.87963 0.90807 1.58896 1.14707 1.10962 1.51797 1.20048 0.78364 0.87124 0.84327 1.90708 1.50303 1.15823 1.85115 1.46259 1.65448 1.14413 1.09893 1.21523 0.98722 0.96158 0.82996 1.19779 0.97206 0.95266 0.93621 1.20933 1.44350 0.98412 0.92378 0.90693 1.25001 0.94450 0.98351 0.95494 1.69907 1.46301 1.36707 1.00875 0.86747 0.79303 0.85613 0.77412 1.20228 1.21316 1.18967 1.20280 0.97244 0.96368 0.96197 1.20939 0.96947 1.00366 0.95819 1.21036 1.00074 0.95711 0.97104 1.21152 0.97051 0.95838 0.99898 1.21173 0.97487 0.99840 0.95427 1.20998 0.99497 0.93817 0.95613 0.91458 0.90712 0.91194 0.83596 0.83660 0.75982 0.92142 0.92048 0.95971 0.96388 0.92581 0.86405 0.86148 0.86224 0.86033 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.36 37.16 0.31 -1.09 16 2 C 0.14 1.69 0.99 -133.91 -0.13 1.55 16 3 N -0.83 -7.97 7.45 -1.14 -0.01 -7.98 16 4 C 0.52 8.63 6.66 -10.99 -0.07 8.55 16 5 O -0.54 -11.04 15.57 5.55 0.09 -10.95 16 6 N -0.71 -12.14 5.45 -60.29 -0.33 -12.47 16 7 C 0.13 2.69 5.61 -4.04 -0.02 2.66 16 8 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 9 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 10 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 13 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 17 C -0.10 -1.20 4.47 -104.62 -0.47 -1.67 16 18 C -0.12 -1.32 9.15 -39.59 -0.36 -1.68 16 19 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 20 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 22 C -0.08 -1.00 8.25 -39.59 -0.33 -1.33 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.74 6.79 -51.93 -0.35 0.39 16 26 H 0.35 2.58 8.85 -39.29 -0.35 2.23 16 27 H 0.35 3.31 7.47 -39.29 -0.29 3.02 16 28 H 0.40 6.18 7.82 -40.82 -0.32 5.86 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 32 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.12 1.03 6.24 -52.48 -0.33 0.70 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.52 6.84 -52.49 -0.36 1.17 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -32.85 315.39 -7.52 -40.37 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.31 Total: 8.29 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.81 Total: -11.80 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.44 Total: -47.27 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.85 -7.52 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.998 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds