Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47438 * 2 1 4 4 C 1.50701 * 109.47204 * 239.99938 * 2 1 3 5 5 O 1.21286 * 119.99792 * 265.39467 * 4 2 1 6 6 N 1.34768 * 120.00258 * 85.39361 * 4 2 1 7 7 C 1.46502 * 120.00349 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47090 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.46999 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00210 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00318 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99682 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46969 * 89.99916 * 13 11 9 15 15 H 1.48497 * 109.46814 * 209.99843 * 13 11 9 16 16 H 1.48499 * 109.47175 * 330.00161 * 13 11 9 17 17 C 1.50706 * 109.46868 * 120.00103 * 2 1 3 18 18 C 1.38235 * 119.99886 * 226.72879 * 17 2 1 19 19 C 1.38229 * 120.00366 * 179.78629 * 18 17 2 20 20 C 1.38243 * 119.99657 * 0.44489 * 19 18 17 21 21 C 1.38236 * 119.99675 * 359.81374 * 20 19 18 22 22 C 1.38228 * 120.00048 * 47.00476 * 17 2 1 23 23 H 1.09005 * 109.47095 * 300.00376 * 1 2 3 24 24 H 1.09001 * 109.47091 * 60.00102 * 1 2 3 25 25 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 26 26 H 1.00900 * 111.00309 * 56.04631 * 3 2 1 27 27 H 1.00900 * 111.00648 * 179.97438 * 3 2 1 28 28 H 0.97003 * 119.99816 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.46394 * 299.99895 * 7 6 4 30 30 H 1.08996 * 109.47196 * 60.00088 * 7 6 4 31 31 H 1.08996 * 109.47003 * 299.99873 * 8 7 6 32 32 H 1.08996 * 109.47174 * 59.99898 * 8 7 6 33 33 H 0.96998 * 120.00265 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.99599 * 0.02562 * 18 17 2 35 35 H 1.07994 * 120.00822 * 180.27628 * 19 18 17 36 36 H 1.07998 * 120.00075 * 179.82967 * 20 19 18 37 37 H 1.08007 * 119.99615 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00481 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3140 -1.8889 -1.1777 6 7 2.1686 -0.0363 -2.3894 7 6 2.6564 -0.7270 -3.5857 8 6 2.7179 0.2587 -4.7543 9 6 3.2203 -0.4517 -5.9848 10 1 3.4703 -1.5014 -5.9381 11 6 3.3598 0.2380 -7.1704 12 7 3.7978 -0.3821 -8.2443 13 14 2.9268 2.0533 -7.2514 14 1 4.1279 2.8637 -6.9263 15 1 2.4580 2.3898 -8.6197 16 1 1.8501 2.3495 -6.2724 17 6 2.0323 -0.7105 1.2305 18 6 3.0363 -0.1447 1.9938 19 6 3.4940 -0.7941 3.1250 20 6 2.9540 -2.0139 3.4877 21 6 1.9537 -2.5822 2.7214 22 6 1.4929 -1.9306 1.5927 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6442 1.9012 0.7813 27 1 3.0283 1.4119 0.0004 28 1 1.9437 0.9064 -2.4315 29 1 3.6527 -1.1255 -3.3942 30 1 1.9797 -1.5444 -3.8347 31 1 1.7218 0.6576 -4.9459 32 1 3.3948 1.0758 -4.5052 33 1 3.8956 0.1031 -9.0786 34 1 3.4604 0.8068 1.7085 35 1 4.2753 -0.3500 3.7238 36 1 3.3135 -2.5227 4.3699 37 1 1.5321 -3.5355 3.0046 38 1 0.7113 -2.3746 0.9941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = -40.423454 kcal Electronic energy + Delta-G solvation = -19322.848038 eV Core-core repulsion = 16356.733085 eV Total energy + Delta-G solvation = -2966.114953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58355 -39.70424 -36.75945 -36.56757 -34.74779 -32.18106 -32.01054 -30.93977 -29.80254 -27.14028 -25.08695 -23.30184 -23.08944 -22.39244 -20.61670 -18.99151 -18.23633 -18.22982 -17.08422 -16.69533 -16.26078 -15.98015 -15.90116 -15.67983 -15.04610 -14.92645 -14.69889 -14.49645 -14.37816 -13.66854 -13.35044 -13.26297 -13.15328 -12.99530 -12.93271 -12.21457 -12.16801 -12.08906 -11.84420 -11.75662 -11.52022 -10.88630 -10.78623 -10.01913 -9.97109 -9.83111 -9.67834 -8.30105 -6.37531 0.35178 0.48728 1.39935 1.42433 1.54190 1.59459 2.26940 2.37430 2.89986 3.04957 3.28520 3.60169 3.83786 3.89862 4.07514 4.21241 4.25398 4.36283 4.41352 4.56949 4.61762 4.74406 4.75649 4.81599 5.02458 5.11240 5.12856 5.17434 5.40028 5.44546 5.51989 5.55551 5.59438 5.65119 5.91575 6.07663 6.22041 6.44007 6.65158 6.72076 7.26975 7.30211 8.86728 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036052 B = 0.003989 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.475490 B = 7017.532588 C = 7235.186555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.154 3.846 3 N -0.824 5.824 4 C 0.514 3.486 5 O -0.584 6.584 6 N -0.701 5.701 7 C 0.143 3.857 8 C -0.010 4.010 9 C -0.540 4.540 10 H 0.027 0.973 11 C 0.005 3.995 12 N -0.951 5.951 13 Si 0.959 3.041 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.238 1.238 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.104 4.104 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.366 0.634 27 H 0.351 0.649 28 H 0.418 0.582 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 6.213 25.901 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.359 5.359 4 C 0.300 3.700 5 O -0.463 6.463 6 N -0.352 5.352 7 C 0.019 3.981 8 C -0.048 4.048 9 C -0.578 4.578 10 H 0.046 0.954 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.781 3.219 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.161 1.161 17 C -0.119 4.119 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.122 4.122 23 H 0.110 0.890 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.183 0.817 27 H 0.166 0.834 28 H 0.255 0.745 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.119 5.488 25.022 26.338 hybrid contribution 0.511 0.074 0.001 0.516 sum -5.608 5.562 25.023 26.240 Atomic orbital electron populations 1.21828 0.89669 1.02987 1.04556 1.19674 0.97756 0.88688 0.88138 1.58844 1.14983 1.09326 1.52757 1.20926 0.77045 0.86796 0.85225 1.90687 1.51857 1.17937 1.85857 1.46029 1.65428 1.14839 1.08941 1.21040 0.97438 0.95459 0.84147 1.19623 0.97742 0.95436 0.92008 1.21255 1.44663 0.96912 0.94994 0.95419 1.26080 0.94057 1.04408 0.94692 1.70076 1.47870 1.39304 1.01824 0.85533 0.80135 0.78103 0.78090 1.18902 1.21156 1.16058 1.20378 0.98272 0.96669 0.96597 1.21235 0.96349 1.01246 0.95869 1.21427 1.00324 0.95645 0.97015 1.21518 0.96351 0.95983 1.00395 1.21441 0.97947 1.00538 0.95211 1.21110 1.00091 0.94544 0.96470 0.89006 0.90663 0.92077 0.81678 0.83384 0.74473 0.94094 0.93956 0.94596 0.94683 0.92297 0.84409 0.83604 0.83768 0.84615 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.36 71.98 0.60 -1.94 16 2 C 0.15 3.48 0.99 2.04 0.00 3.48 16 3 N -0.82 -13.47 7.45 -157.52 -1.17 -14.64 16 4 C 0.51 16.92 6.66 87.66 0.58 17.50 16 5 O -0.58 -24.30 15.57 -3.05 -0.05 -24.35 16 6 N -0.70 -23.31 5.45 -463.06 -2.53 -25.83 16 7 C 0.14 6.08 5.61 86.38 0.48 6.56 16 8 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 9 C -0.54 -31.37 9.66 25.60 0.25 -31.13 16 10 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 11 C 0.00 0.27 5.47 84.65 0.46 0.74 16 12 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 13 Si 0.96 42.84 27.47 68.60 1.88 44.72 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 17 C -0.12 -2.70 4.47 -19.87 -0.09 -2.79 16 18 C -0.13 -2.48 9.15 22.27 0.20 -2.28 16 19 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 20 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 21 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 22 C -0.10 -2.55 8.25 22.27 0.18 -2.36 16 23 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.28 6.79 -2.38 -0.02 1.26 16 26 H 0.37 4.11 8.85 -89.69 -0.79 3.31 16 27 H 0.35 5.65 7.47 -89.69 -0.67 4.98 16 28 H 0.42 11.75 7.82 -92.71 -0.72 11.03 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 32 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.14 1.98 6.24 -2.91 -0.02 1.96 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.11 2.89 6.84 -2.91 -0.02 2.87 16 Total: -1.00 -73.56 315.39 0.76 -72.80 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.16 Total: 25.93 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.48 Total: -19.09 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -3.40 Total: -100.01 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -73.56 0.76 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.375 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds