Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08998 * 109.47577 * 55.00179 * 3 2 1 5 5 C 1.50704 * 109.46760 * 175.00202 * 3 2 1 6 6 H 1.08004 * 120.00234 * 119.99722 * 5 3 2 7 7 C 1.37878 * 120.00304 * 299.99925 * 5 3 2 8 8 N 1.31511 * 120.00478 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99551 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46835 * 90.00389 * 9 7 5 11 11 H 1.48500 * 109.46952 * 210.00269 * 9 7 5 12 12 H 1.48497 * 109.47421 * 330.00253 * 9 7 5 13 13 N 1.46498 * 109.47034 * 294.99914 * 3 2 1 14 14 C 1.34779 * 120.00101 * 85.00153 * 13 3 2 15 15 O 1.21280 * 119.99574 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99940 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47556 * 320.00134 * 16 14 13 18 18 N 1.46905 * 109.46910 * 200.00173 * 16 14 13 19 19 C 1.50700 * 109.47079 * 80.00330 * 16 14 13 20 20 C 1.38240 * 119.99903 * 79.72127 * 19 16 14 21 21 C 1.38232 * 120.00021 * 179.78511 * 20 19 16 22 22 C 1.38241 * 119.99639 * 0.44533 * 21 20 19 23 23 C 1.38227 * 120.00165 * 359.81207 * 22 21 20 24 24 C 1.38228 * 120.00066 * 259.99868 * 19 16 14 25 25 H 1.09003 * 109.46571 * 300.00048 * 1 2 3 26 26 H 1.08998 * 109.47119 * 59.99657 * 1 2 3 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46735 * 240.00022 * 2 1 3 29 29 H 1.09002 * 109.47042 * 119.99829 * 2 1 3 30 30 H 0.96994 * 120.00354 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00155 * 265.00204 * 13 3 2 32 32 H 1.00901 * 110.99869 * 300.00472 * 18 16 14 33 33 H 1.00896 * 110.99543 * 63.95595 * 18 16 14 34 34 H 1.07997 * 119.99986 * 0.02562 * 20 19 16 35 35 H 1.07990 * 120.00253 * 180.27457 * 21 20 19 36 36 H 1.08004 * 119.99822 * 179.82586 * 22 21 20 37 37 H 1.08010 * 120.00298 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.99913 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1101 2.5707 10 1 2.8745 -1.3260 2.2645 11 1 3.7942 0.2361 3.8754 12 1 1.7882 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4341 16 6 0.0366 3.3386 -2.6545 17 1 0.8863 3.8935 -3.0522 18 7 -1.0759 4.2633 -2.3991 19 6 -0.3954 2.2969 -3.6542 20 6 -1.6640 1.7526 -3.5806 21 6 -2.0619 0.8003 -4.5003 22 6 -1.1880 0.3858 -5.4880 23 6 0.0823 0.9263 -5.5583 24 6 0.4787 1.8817 -4.6412 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8771 0.4819 2.1127 31 1 2.2719 2.1231 -1.9978 32 1 -1.8763 3.7727 -2.0295 33 1 -0.7918 5.0088 -1.7813 34 1 -2.3455 2.0740 -2.8070 35 1 -3.0544 0.3783 -4.4455 36 1 -1.4979 -0.3602 -6.2048 37 1 0.7652 0.6021 -6.3297 38 1 1.4711 2.3040 -4.6962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = -13.606515 kcal Electronic energy + Delta-G solvation = -20132.871278 eV Core-core repulsion = 17167.919195 eV Total energy + Delta-G solvation = -2964.952083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07305 -38.62390 -35.69248 -34.31351 -32.43302 -31.54540 -30.90603 -30.29227 -27.72821 -25.57603 -22.75979 -22.55216 -21.91885 -20.35411 -19.60254 -17.53789 -17.22048 -16.13505 -16.02110 -15.50657 -15.19758 -14.76192 -14.55428 -14.20573 -13.60666 -13.37354 -13.19105 -12.97022 -12.67085 -12.40830 -12.13688 -11.93054 -11.77333 -11.18051 -11.05617 -10.94726 -10.92348 -10.67461 -9.97161 -9.92208 -9.52785 -9.25928 -9.00340 -8.88617 -8.78896 -8.36164 -8.11930 -6.24247 -4.26863 1.32449 1.43181 3.09657 3.20799 3.32511 3.37154 3.72838 4.00042 4.28431 4.58385 4.83482 4.86999 5.00212 5.09351 5.13185 5.28021 5.33795 5.50853 5.65261 5.93631 5.95053 6.00136 6.04332 6.15477 6.44098 6.51142 6.57897 6.63459 6.66383 6.80940 6.91336 6.96796 7.02036 7.21721 7.26029 7.38517 7.47688 8.09384 8.47674 8.71083 8.85060 9.36545 10.87791 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.005892 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.126351 B = 4751.300647 C = 4874.159495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.692 5.692 14 C 0.476 3.524 15 O -0.553 6.553 16 C 0.110 3.890 17 H 0.107 0.893 18 N -0.817 5.817 19 C -0.065 4.065 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.108 4.108 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.348 0.652 33 H 0.347 0.653 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 1.092 -11.785 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.065 0.935 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.339 5.339 14 C 0.259 3.741 15 O -0.433 6.433 16 C -0.006 4.006 17 H 0.125 0.875 18 N -0.347 5.347 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.127 4.127 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.133 1.172 -11.764 16.940 hybrid contribution 0.109 -0.889 1.449 1.703 sum -12.024 0.284 -10.315 15.845 Atomic orbital electron populations 1.21862 0.96991 0.98997 1.02142 1.22266 0.94328 0.99935 1.01045 1.19160 0.95647 0.88536 0.82878 0.93451 1.21047 0.88587 1.39874 1.07850 0.90197 1.24828 0.94853 0.95115 0.97653 1.69860 1.08669 1.44437 1.29849 0.86906 0.80916 0.79974 0.80939 1.20247 1.22127 1.18577 1.46225 1.14882 1.55028 1.17776 1.21504 0.82832 0.79712 0.90045 1.90661 1.51605 1.60369 1.40642 1.20440 0.95702 0.92454 0.91975 0.87524 1.59223 1.07150 1.13501 1.54796 1.19394 0.94624 0.96851 0.95712 1.20920 0.95769 0.96232 0.98694 1.21095 0.99697 0.97672 0.95423 1.21134 0.94223 1.00022 0.98684 1.21084 0.96362 0.97072 0.99134 1.21021 0.99303 0.97713 0.94652 0.93052 0.92846 0.95055 0.92339 0.92840 0.92257 0.77210 0.83775 0.84002 0.86145 0.86205 0.86296 0.85970 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.67 1.83 -69.08 -0.13 5.54 16 4 H 0.05 1.24 6.63 -51.93 -0.34 0.89 16 5 C -0.54 -14.34 9.31 -34.44 -0.32 -14.66 16 6 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 9 Si 0.88 21.78 24.41 -169.99 -4.15 17.63 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.69 -13.36 5.02 -54.93 -0.28 -13.63 16 14 C 0.48 8.49 5.61 -10.99 -0.06 8.43 16 15 O -0.55 -11.39 13.39 5.56 0.07 -11.32 16 16 C 0.11 1.52 3.39 -70.01 -0.24 1.29 16 17 H 0.11 1.32 8.00 -51.93 -0.42 0.91 16 18 N -0.82 -10.44 8.81 -6.65 -0.06 -10.50 16 19 C -0.06 -0.87 4.94 -104.62 -0.52 -1.39 16 20 C -0.10 -1.28 9.29 -39.58 -0.37 -1.65 16 21 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 24 C -0.11 -1.32 9.67 -39.58 -0.38 -1.70 16 25 H 0.05 1.10 7.85 -51.93 -0.41 0.69 16 26 H 0.05 1.07 5.65 -51.93 -0.29 0.77 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 32 H 0.35 4.51 6.94 -39.29 -0.27 4.24 16 33 H 0.35 4.21 9.06 -39.29 -0.36 3.86 16 34 H 0.12 1.54 6.67 -52.49 -0.35 1.19 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.30 8.04 -52.49 -0.42 0.87 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -30.77 306.65 -7.23 -38.00 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.09 Total: 13.76 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.12 Total: -13.06 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.44 Total: -49.64 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.15 Total: 17.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.77 -7.23 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.398 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds