Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08998 * 109.47577 * 55.00179 * 3 2 1 5 5 C 1.50704 * 109.46760 * 175.00202 * 3 2 1 6 6 H 1.08004 * 120.00234 * 119.99722 * 5 3 2 7 7 C 1.37878 * 120.00304 * 299.99925 * 5 3 2 8 8 N 1.31511 * 120.00478 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99551 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46835 * 90.00389 * 9 7 5 11 11 H 1.48500 * 109.46952 * 210.00269 * 9 7 5 12 12 H 1.48497 * 109.47421 * 330.00253 * 9 7 5 13 13 N 1.46498 * 109.47034 * 294.99914 * 3 2 1 14 14 C 1.34779 * 120.00101 * 85.00153 * 13 3 2 15 15 O 1.21280 * 119.99574 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99940 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.47556 * 320.00134 * 16 14 13 18 18 N 1.46905 * 109.46910 * 200.00173 * 16 14 13 19 19 C 1.50700 * 109.47079 * 80.00330 * 16 14 13 20 20 C 1.38240 * 119.99903 * 79.72127 * 19 16 14 21 21 C 1.38232 * 120.00021 * 179.78511 * 20 19 16 22 22 C 1.38241 * 119.99639 * 0.44533 * 21 20 19 23 23 C 1.38227 * 120.00165 * 359.81207 * 22 21 20 24 24 C 1.38228 * 120.00066 * 259.99868 * 19 16 14 25 25 H 1.09003 * 109.46571 * 300.00048 * 1 2 3 26 26 H 1.08998 * 109.47119 * 59.99657 * 1 2 3 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46735 * 240.00022 * 2 1 3 29 29 H 1.09002 * 109.47042 * 119.99829 * 2 1 3 30 30 H 0.96994 * 120.00354 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00155 * 265.00204 * 13 3 2 32 32 H 1.00901 * 110.99869 * 300.00472 * 18 16 14 33 33 H 1.00896 * 110.99543 * 63.95595 * 18 16 14 34 34 H 1.07997 * 119.99986 * 0.02562 * 20 19 16 35 35 H 1.07990 * 120.00253 * 180.27457 * 21 20 19 36 36 H 1.08004 * 119.99822 * 179.82586 * 22 21 20 37 37 H 1.08010 * 120.00298 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.99913 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8784 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1101 2.5707 10 1 2.8745 -1.3260 2.2645 11 1 3.7942 0.2361 3.8754 12 1 1.7882 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4341 16 6 0.0366 3.3386 -2.6545 17 1 0.8863 3.8935 -3.0522 18 7 -1.0759 4.2633 -2.3991 19 6 -0.3954 2.2969 -3.6542 20 6 -1.6640 1.7526 -3.5806 21 6 -2.0619 0.8003 -4.5003 22 6 -1.1880 0.3858 -5.4880 23 6 0.0823 0.9263 -5.5583 24 6 0.4787 1.8817 -4.6412 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8771 0.4819 2.1127 31 1 2.2719 2.1231 -1.9978 32 1 -1.8763 3.7727 -2.0295 33 1 -0.7918 5.0088 -1.7813 34 1 -2.3455 2.0740 -2.8070 35 1 -3.0544 0.3783 -4.4455 36 1 -1.4979 -0.3602 -6.2048 37 1 0.7652 0.6021 -6.3297 38 1 1.4711 2.3040 -4.6962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = -35.944983 kcal Electronic energy + Delta-G solvation = -20133.839947 eV Core-core repulsion = 17167.919195 eV Total energy + Delta-G solvation = -2965.920752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35260 -39.74889 -37.34478 -35.51474 -34.42834 -33.20675 -31.81811 -31.22385 -29.57341 -26.81861 -24.59226 -23.43343 -23.18242 -21.85073 -21.11454 -19.22523 -18.22936 -17.79609 -17.56214 -16.69886 -16.57811 -16.07439 -15.74074 -15.50708 -15.17212 -14.98586 -14.28232 -14.17373 -14.05600 -13.80875 -13.73473 -13.48883 -13.06728 -12.99373 -12.80237 -12.45694 -12.00695 -11.89462 -11.83316 -11.45385 -11.29150 -11.20555 -10.88805 -10.01501 -9.79258 -9.76984 -9.47729 -8.40481 -6.45798 0.41145 0.55032 1.23730 1.31886 1.41139 1.70070 2.22921 2.44023 2.92620 2.95316 3.55461 3.79693 3.92732 3.97905 4.19045 4.19585 4.28089 4.30830 4.35978 4.43798 4.66452 4.77490 4.81072 4.95486 5.06977 5.08427 5.18358 5.19153 5.37797 5.46805 5.57732 5.63028 5.65591 5.66537 5.92385 6.11808 6.13365 6.35222 6.56218 6.84186 7.16646 7.39756 8.74651 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.005892 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.126351 B = 4751.300647 C = 4874.159495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.292 1.292 12 H -0.262 1.262 13 N -0.693 5.693 14 C 0.477 3.523 15 O -0.581 6.581 16 C 0.123 3.877 17 H 0.123 0.877 18 N -0.810 5.810 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.404 0.596 32 H 0.347 0.653 33 H 0.350 0.650 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 0.268 -13.163 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.145 3.855 4 H 0.039 0.961 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.187 1.187 13 N -0.342 5.342 14 C 0.262 3.738 15 O -0.462 6.462 16 C 0.007 3.993 17 H 0.141 0.859 18 N -0.339 5.339 19 C -0.084 4.084 20 C -0.134 4.134 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.239 0.761 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.537 0.363 -13.172 18.891 hybrid contribution 0.525 -0.584 1.778 1.943 sum -13.012 -0.221 -11.394 17.297 Atomic orbital electron populations 1.21735 0.95276 1.00362 1.01487 1.22184 0.95774 0.98648 1.00790 1.18766 0.93208 0.89535 0.84021 0.96133 1.21291 0.90335 1.38547 1.06927 0.92450 1.25519 0.95685 0.95877 0.99782 1.69965 1.10194 1.46088 1.30867 0.86061 0.79287 0.79892 0.78521 1.18733 1.21976 1.18676 1.46077 1.15942 1.55449 1.16712 1.22290 0.81630 0.78699 0.91144 1.90643 1.52203 1.61237 1.42127 1.20413 0.96447 0.92561 0.89874 0.85932 1.59255 1.06760 1.13189 1.54700 1.19414 0.95273 0.97427 0.96322 1.21049 0.95848 0.97110 0.99345 1.21382 1.00827 0.97238 0.95155 1.21510 0.93935 1.00009 0.98640 1.21435 0.96982 0.96477 0.99256 1.21279 0.99775 0.98037 0.94600 0.94515 0.92678 0.92617 0.91653 0.93938 0.92064 0.76071 0.83820 0.83631 0.86593 0.84347 0.83727 0.83708 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.52 71.98 0.61 -4.51 16 2 C -0.14 -5.89 5.11 30.60 0.16 -5.73 16 3 C 0.25 11.69 1.83 44.25 0.08 11.77 16 4 H 0.02 1.09 6.63 -2.39 -0.02 1.07 16 5 C -0.53 -28.84 9.31 25.60 0.24 -28.60 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.76 5.45 84.66 0.46 2.22 16 8 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 9 Si 0.93 44.91 24.41 68.60 1.67 46.58 16 10 H -0.26 -11.89 6.83 99.48 0.68 -11.21 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.26 -12.53 6.53 99.48 0.65 -11.88 16 13 N -0.69 -26.41 5.02 -446.09 -2.24 -28.65 16 14 C 0.48 16.65 5.61 87.66 0.49 17.14 16 15 O -0.58 -23.69 13.39 -3.03 -0.04 -23.73 16 16 C 0.12 3.24 3.39 43.42 0.15 3.39 16 17 H 0.12 2.83 8.00 -2.39 -0.02 2.81 16 18 N -0.81 -19.77 8.81 -174.94 -1.54 -21.32 16 19 C -0.08 -2.10 4.94 -19.87 -0.10 -2.20 16 20 C -0.12 -2.84 9.29 22.27 0.21 -2.63 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 22 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 23 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 24 C -0.12 -2.62 9.67 22.27 0.22 -2.41 16 25 H 0.04 1.52 7.85 -2.39 -0.02 1.50 16 26 H 0.05 2.12 5.65 -2.39 -0.01 2.10 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.04 1.94 3.22 -2.39 -0.01 1.93 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 31 H 0.40 13.74 8.54 -92.71 -0.79 12.95 16 32 H 0.35 8.72 6.94 -89.69 -0.62 8.10 16 33 H 0.35 8.15 9.06 -89.70 -0.81 7.33 16 34 H 0.12 2.86 6.67 -2.91 -0.02 2.84 16 35 H 0.14 2.25 8.06 -2.92 -0.02 2.23 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.14 2.56 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -65.58 306.65 0.12 -65.46 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -1.21 Total: 35.32 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 3.18 Total: -18.23 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.48 Total: -105.40 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.73 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -65.58 0.12 -65.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.512 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds