Wall clock time and date at job start Mon Mar 30 2020 04:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47066 * 304.99560 * 3 2 1 5 5 C 1.50697 * 109.46952 * 184.99918 * 3 2 1 6 6 H 1.08007 * 119.99869 * 239.99904 * 5 3 2 7 7 C 1.37878 * 120.00351 * 59.99930 * 5 3 2 8 8 N 1.31517 * 119.99517 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47181 * 59.99984 * 9 7 5 11 11 H 1.48502 * 109.47014 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47162 * 299.99658 * 9 7 5 13 13 N 1.46501 * 109.47207 * 64.99831 * 3 2 1 14 14 C 1.34776 * 119.99686 * 275.00090 * 13 3 2 15 15 O 1.21548 * 120.00627 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99893 * 180.02562 * 14 13 3 17 17 C 1.39575 * 120.14558 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85214 * 180.02562 * 17 16 14 19 19 C 1.38365 * 120.14727 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85539 * 179.72406 * 19 18 17 21 21 N 1.46903 * 109.47003 * 89.99877 * 20 19 18 22 22 C 1.38364 * 120.29020 * 0.02562 * 19 18 17 23 23 C 1.37957 * 120.14261 * 0.02562 * 22 19 18 24 24 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47144 * 300.00668 * 1 2 3 26 26 H 1.09001 * 109.46800 * 60.00445 * 1 2 3 27 27 H 1.08994 * 109.47144 * 239.99332 * 2 1 3 28 28 H 1.09001 * 109.46800 * 119.99555 * 2 1 3 29 29 H 0.97004 * 119.99638 * 179.97438 * 8 7 5 30 30 H 0.96994 * 119.99916 * 94.99845 * 13 3 2 31 31 H 1.08000 * 120.07330 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.92780 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47451 * 209.99598 * 20 19 18 34 34 H 1.09002 * 109.47099 * 330.00301 * 20 19 18 35 35 H 1.00901 * 111.00187 * 180.02562 * 21 20 19 36 36 H 1.00893 * 111.00236 * 303.95497 * 21 20 19 37 37 H 1.07993 * 119.92279 * 179.97438 * 22 19 18 38 38 H 1.08000 * 120.06785 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5967 0.1451 -0.2341 11 1 6.3980 0.2155 -2.6496 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3668 15 8 -0.3410 2.6327 0.4319 16 6 0.0442 3.3259 2.6299 17 6 -1.2159 3.9135 2.7526 18 6 -1.5742 4.5297 3.9337 19 6 -0.6879 4.5655 4.9956 20 6 -1.0838 5.2457 6.2807 21 7 -1.7304 4.2723 7.1709 22 6 0.5628 3.9849 4.8805 23 6 0.9340 3.3665 3.7045 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0613 -2.9497 30 1 2.2719 2.1232 1.9977 31 1 -1.9086 3.8866 1.9244 32 1 -2.5488 4.9851 4.0299 33 1 -0.1955 5.6488 6.7671 34 1 -1.7787 6.0568 6.0633 35 1 -2.0058 4.7044 8.0400 36 1 -2.5197 3.8367 6.7179 37 1 1.2501 4.0167 5.7129 38 1 1.9106 2.9141 3.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:32 Heat of formation + Delta-G solvation = -22.609467 kcal Electronic energy + Delta-G solvation = -19299.992418 eV Core-core repulsion = 16334.649938 eV Total energy + Delta-G solvation = -2965.342481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84495 -38.28596 -35.17514 -34.77721 -32.49338 -31.31893 -30.81492 -30.14085 -27.05780 -25.42024 -23.15215 -22.47638 -21.93363 -20.19730 -19.29757 -17.87568 -16.57628 -15.90117 -15.78861 -15.09053 -14.93316 -14.76301 -14.48537 -14.14826 -13.91365 -13.49466 -13.00637 -12.70876 -12.64386 -12.41807 -11.83249 -11.47046 -11.44404 -11.22478 -11.00363 -10.93771 -10.81045 -10.32004 -10.16227 -9.61838 -9.12128 -9.06737 -9.02623 -8.90708 -8.68070 -8.48896 -7.80526 -6.11484 -4.21105 1.00840 1.45114 3.26285 3.29840 3.31665 3.33006 4.07750 4.17815 4.38682 4.45219 4.63007 4.76115 5.00261 5.10935 5.19701 5.34010 5.42055 5.44142 5.68321 5.90390 6.05517 6.37488 6.41637 6.48700 6.50220 6.53641 6.68720 6.75324 6.94872 7.07161 7.09979 7.22063 7.38108 7.45594 7.63036 7.74803 7.91224 8.18985 8.66783 8.78012 9.12538 9.46128 10.93842 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030384 B = 0.004368 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.327061 B = 6409.180115 C = 6970.875170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.546 6.546 16 C -0.118 4.118 17 C -0.066 4.066 18 C -0.126 4.126 19 C -0.076 4.076 20 C 0.101 3.899 21 N -0.846 5.846 22 C -0.107 4.107 23 C -0.089 4.089 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.342 0.658 36 H 0.343 0.657 37 H 0.125 0.875 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 7.533 15.313 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.122 4.122 17 C -0.085 4.085 18 C -0.144 4.144 19 C -0.077 4.077 20 C -0.029 4.029 21 N -0.376 5.376 22 C -0.125 4.125 23 C -0.108 4.108 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.295 7.008 14.404 17.601 hybrid contribution 0.490 0.560 0.176 0.765 sum -6.804 7.568 14.580 17.781 Atomic orbital electron populations 1.21845 0.98347 0.98073 1.01258 1.21938 0.92641 0.99729 1.02322 1.18815 0.94233 0.89230 0.80875 0.93183 1.21195 0.90675 1.39176 1.06363 0.92139 1.24881 0.98620 0.94764 0.95357 1.69889 1.35226 1.37487 1.09329 0.86509 0.84831 0.78313 0.77458 1.20145 1.21126 1.20180 1.46465 1.14377 1.55419 1.18578 1.18186 0.83003 0.79375 0.86868 1.90730 1.51557 1.60257 1.40012 1.20383 0.95534 1.01094 0.95143 1.21246 0.95382 0.94416 0.97445 1.20952 0.99326 1.00999 0.93161 1.19872 0.94510 0.98557 0.94750 1.20718 0.99109 0.92327 0.90756 1.58701 1.35974 1.35165 1.07755 1.20909 0.96153 0.98079 0.97379 1.21415 0.99192 0.97676 0.92544 0.95818 0.94267 0.93137 0.88219 0.95004 0.92494 0.77909 0.84759 0.86123 0.90109 0.94615 0.84549 0.84411 0.85656 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.70 -14.89 4.97 -55.88 -0.28 -15.17 16 14 C 0.54 11.19 6.34 -12.33 -0.08 11.11 16 15 O -0.55 -13.02 13.48 5.32 0.07 -12.94 16 16 C -0.12 -1.96 5.87 -104.97 -0.62 -2.58 16 17 C -0.07 -0.98 9.60 -39.19 -0.38 -1.35 16 18 C -0.13 -1.48 9.68 -39.64 -0.38 -1.87 16 19 C -0.08 -0.85 5.40 -104.53 -0.56 -1.41 16 20 C 0.10 0.85 6.91 -4.98 -0.03 0.81 16 21 N -0.85 -6.65 9.61 -11.41 -0.11 -6.76 16 22 C -0.11 -1.28 9.68 -39.64 -0.38 -1.66 16 23 C -0.09 -1.25 9.54 -39.19 -0.37 -1.63 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 7.19 6.57 -40.82 -0.27 6.92 16 31 H 0.13 2.02 7.65 -52.49 -0.40 1.62 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.34 1.91 9.08 -39.29 -0.36 1.56 16 36 H 0.34 2.56 8.98 -39.30 -0.35 2.21 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.64 6.41 -52.49 -0.34 1.30 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -30.59 313.78 -8.36 -38.95 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.19 Total: 10.50 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.19 Total: -10.77 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.24 Total: -46.06 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.59 -8.36 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.338 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds