Wall clock time and date at job start Mon Mar 30 2020 04:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47066 * 304.99560 * 3 2 1 5 5 C 1.50697 * 109.46952 * 184.99918 * 3 2 1 6 6 H 1.08007 * 119.99869 * 239.99904 * 5 3 2 7 7 C 1.37878 * 120.00351 * 59.99930 * 5 3 2 8 8 N 1.31517 * 119.99517 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47181 * 59.99984 * 9 7 5 11 11 H 1.48502 * 109.47014 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47162 * 299.99658 * 9 7 5 13 13 N 1.46501 * 109.47207 * 64.99831 * 3 2 1 14 14 C 1.34776 * 119.99686 * 275.00090 * 13 3 2 15 15 O 1.21548 * 120.00627 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99893 * 180.02562 * 14 13 3 17 17 C 1.39575 * 120.14558 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85214 * 180.02562 * 17 16 14 19 19 C 1.38365 * 120.14727 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85539 * 179.72406 * 19 18 17 21 21 N 1.46903 * 109.47003 * 89.99877 * 20 19 18 22 22 C 1.38364 * 120.29020 * 0.02562 * 19 18 17 23 23 C 1.37957 * 120.14261 * 0.02562 * 22 19 18 24 24 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47144 * 300.00668 * 1 2 3 26 26 H 1.09001 * 109.46800 * 60.00445 * 1 2 3 27 27 H 1.08994 * 109.47144 * 239.99332 * 2 1 3 28 28 H 1.09001 * 109.46800 * 119.99555 * 2 1 3 29 29 H 0.97004 * 119.99638 * 179.97438 * 8 7 5 30 30 H 0.96994 * 119.99916 * 94.99845 * 13 3 2 31 31 H 1.08000 * 120.07330 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.92780 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47451 * 209.99598 * 20 19 18 34 34 H 1.09002 * 109.47099 * 330.00301 * 20 19 18 35 35 H 1.00901 * 111.00187 * 180.02562 * 21 20 19 36 36 H 1.00893 * 111.00236 * 303.95497 * 21 20 19 37 37 H 1.07993 * 119.92279 * 179.97438 * 22 19 18 38 38 H 1.08000 * 120.06785 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5967 0.1451 -0.2341 11 1 6.3980 0.2155 -2.6496 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3668 15 8 -0.3410 2.6327 0.4319 16 6 0.0442 3.3259 2.6299 17 6 -1.2159 3.9135 2.7526 18 6 -1.5742 4.5297 3.9337 19 6 -0.6879 4.5655 4.9956 20 6 -1.0838 5.2457 6.2807 21 7 -1.7304 4.2723 7.1709 22 6 0.5628 3.9849 4.8805 23 6 0.9340 3.3665 3.7045 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0613 -2.9497 30 1 2.2719 2.1232 1.9977 31 1 -1.9086 3.8866 1.9244 32 1 -2.5488 4.9851 4.0299 33 1 -0.1955 5.6488 6.7671 34 1 -1.7787 6.0568 6.0633 35 1 -2.0058 4.7044 8.0400 36 1 -2.5197 3.8367 6.7179 37 1 1.2501 4.0167 5.7129 38 1 1.9106 2.9141 3.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:32 Heat of formation + Delta-G solvation = -44.045409 kcal Electronic energy + Delta-G solvation = -19300.921950 eV Core-core repulsion = 16334.649938 eV Total energy + Delta-G solvation = -2966.272013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20662 -39.62788 -36.96993 -35.68891 -34.36223 -33.02800 -31.86613 -31.38918 -28.96112 -26.48098 -24.99102 -23.54512 -23.18334 -21.78000 -21.01931 -19.43835 -17.91881 -17.37054 -17.12411 -16.53987 -16.29564 -15.89589 -15.77912 -15.56959 -15.04884 -14.65283 -14.52416 -14.36382 -13.94848 -13.54849 -13.42726 -13.18351 -13.09939 -12.91418 -12.65899 -12.36530 -12.17949 -12.07530 -11.95118 -11.60951 -11.08100 -10.77473 -10.52924 -9.96804 -9.90232 -9.64583 -9.49553 -8.16615 -6.34584 -0.11795 0.43444 1.44954 1.47066 1.54834 1.98281 2.34863 2.61044 2.91669 3.12806 3.70601 3.82611 3.93270 4.00628 4.09313 4.34685 4.43331 4.46934 4.54892 4.69307 4.70828 4.73535 4.92362 5.04408 5.07874 5.22622 5.33058 5.41020 5.44381 5.54048 5.56426 5.59555 5.77212 5.89951 5.95764 6.14780 6.22325 6.62601 6.72273 6.94574 7.31546 7.52108 8.88783 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030384 B = 0.004368 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.327061 B = 6409.180115 C = 6970.875170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.699 5.699 14 C 0.537 3.463 15 O -0.587 6.587 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.064 4.064 20 C 0.103 3.897 21 N -0.855 5.855 22 C -0.106 4.106 23 C -0.090 4.090 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.401 0.599 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.356 0.644 36 H 0.345 0.655 37 H 0.151 0.849 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 8.459 18.391 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.470 6.470 16 C -0.151 4.151 17 C -0.097 4.097 18 C -0.137 4.137 19 C -0.064 4.064 20 C -0.027 4.027 21 N -0.387 5.387 22 C -0.125 4.125 23 C -0.109 4.109 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.139 0.861 32 H 0.168 0.832 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.793 7.950 17.536 20.417 hybrid contribution 0.246 0.342 -0.696 0.814 sum -6.547 8.292 16.840 19.879 Atomic orbital electron populations 1.21680 0.97091 0.99195 1.00147 1.21791 0.93682 0.99095 1.01404 1.18411 0.93821 0.89200 0.81106 0.98349 1.21544 0.91269 1.39262 1.06913 0.91030 1.25785 1.03479 0.94233 0.94905 1.70046 1.37221 1.38172 1.09838 0.85401 0.78865 0.78472 0.77623 1.18819 1.21116 1.19647 1.46216 1.15231 1.55599 1.17699 1.18855 0.82046 0.78523 0.87996 1.90696 1.52577 1.61766 1.41962 1.20074 0.97343 1.03636 0.94004 1.21285 0.94649 0.95229 0.98535 1.21217 1.00703 0.99908 0.91900 1.20298 0.93744 0.96729 0.95672 1.20748 1.00169 0.92440 0.89355 1.58672 1.36343 1.35326 1.08355 1.21227 0.97017 0.97113 0.97093 1.21522 0.99032 0.97839 0.92498 0.93399 0.94118 0.95474 0.90720 0.94053 0.92522 0.76266 0.86080 0.83191 0.89007 0.92876 0.82956 0.84181 0.83118 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.98 0.61 -5.21 16 2 C -0.12 -6.14 5.45 30.60 0.17 -5.98 16 3 C 0.28 14.71 2.24 44.24 0.10 14.80 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.10 16 5 C -0.55 -29.70 8.73 25.60 0.22 -29.48 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -52.86 11.29 21.45 0.24 -52.62 16 9 Si 0.97 42.30 29.54 68.60 2.03 44.32 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.70 -30.55 4.97 -448.99 -2.23 -32.78 16 14 C 0.54 23.12 6.34 86.79 0.55 23.67 16 15 O -0.59 -29.65 13.48 -3.87 -0.05 -29.71 16 16 C -0.15 -4.91 5.87 -20.09 -0.12 -5.02 16 17 C -0.08 -2.28 9.60 22.53 0.22 -2.07 16 18 C -0.12 -2.52 9.68 22.23 0.22 -2.30 16 19 C -0.06 -1.21 5.40 -19.81 -0.11 -1.31 16 20 C 0.10 1.29 6.91 85.55 0.59 1.88 16 21 N -0.85 -10.22 9.61 -190.01 -1.83 -12.05 16 22 C -0.11 -2.23 9.68 22.23 0.22 -2.01 16 23 C -0.09 -2.40 9.54 22.53 0.21 -2.18 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 26 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 27 H 0.07 4.20 5.95 -2.39 -0.01 4.18 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.40 14.98 6.57 -92.71 -0.61 14.37 16 31 H 0.12 3.79 7.65 -2.91 -0.02 3.76 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 35 H 0.36 2.67 9.08 -89.69 -0.81 1.86 16 36 H 0.35 3.96 8.98 -89.70 -0.81 3.16 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.14 3.29 6.41 -2.91 -0.02 3.27 16 Total: -1.00 -68.63 313.78 0.35 -68.28 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -1.13 Total: 28.43 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 3.33 Total: -13.88 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.82 Total: -97.45 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.63 0.35 -68.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds