Wall clock time and date at job start Mon Mar 30 2020 04:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 3 16 16 C 1.47869 * 119.99621 * 179.72373 * 14 13 3 17 17 C 1.39612 * 120.10973 * 0.02562 * 16 14 13 18 18 C 1.37976 * 120.00454 * 179.97438 * 17 16 14 19 19 C 1.38247 * 120.23119 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.89511 * 180.02562 * 19 18 17 21 21 C 1.38989 * 120.21676 * 359.97438 * 19 18 17 22 22 N 1.39698 * 120.00332 * 180.02562 * 21 19 18 23 23 C 1.38683 * 119.98635 * 359.78354 * 21 19 18 24 24 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 26 26 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.08005 * 119.99787 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.88842 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.47060 * 90.00037 * 20 19 18 34 34 H 1.08992 * 109.47307 * 210.00259 * 20 19 18 35 35 H 1.09003 * 109.47004 * 330.00585 * 20 19 18 36 36 H 0.97007 * 120.00373 * 359.97438 * 22 21 19 37 37 H 0.97000 * 120.00434 * 179.97438 * 22 21 19 38 38 H 1.08001 * 120.10982 * 180.23357 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4301 16 6 0.0483 3.3358 -2.6263 17 6 0.9379 3.3736 -3.7016 18 6 0.5726 3.9956 -4.8778 19 6 -0.6734 4.5825 -4.9969 20 6 -1.0648 5.2593 -6.2853 21 6 -1.5668 4.5495 -3.9328 22 7 -2.8250 5.1435 -4.0582 23 6 -1.2109 3.9223 -2.7481 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 1.9121 2.9159 -3.6128 32 1 1.2621 4.0234 -5.7086 33 1 -1.5434 4.5357 -6.9450 34 1 -1.7592 6.0719 -6.0724 35 1 -0.1745 5.6598 -6.7703 36 1 -3.0750 5.5794 -4.8880 37 1 -3.4487 5.1202 -3.3157 38 1 -1.9050 3.8922 -1.9213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:40 Heat of formation + Delta-G solvation = -45.597789 kcal Electronic energy + Delta-G solvation = -19471.141937 eV Core-core repulsion = 16504.802608 eV Total energy + Delta-G solvation = -2966.339329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19761 -39.79292 -36.93909 -35.57123 -34.25491 -33.49621 -32.61790 -29.82142 -29.23193 -27.75797 -25.07598 -23.57678 -23.16601 -21.80239 -20.94642 -19.42325 -18.01037 -17.88055 -17.13342 -16.58319 -16.34778 -16.23314 -15.75667 -14.99435 -14.84544 -14.70800 -14.57471 -14.42940 -13.88184 -13.52358 -13.18419 -13.13904 -12.99455 -12.86213 -12.70093 -12.42554 -12.14064 -12.07783 -12.03642 -11.62362 -11.51778 -11.04462 -10.74000 -10.52532 -9.78235 -9.55134 -8.41119 -8.15569 -6.33153 0.00043 0.64441 1.45073 1.45974 1.58230 2.07600 2.35945 2.60527 3.02857 3.06218 3.14323 3.87969 3.94363 4.16070 4.30762 4.47854 4.50338 4.55862 4.68287 4.75746 4.79739 4.89482 5.00096 5.06125 5.21698 5.28298 5.32459 5.42939 5.53715 5.55768 5.59983 5.62432 5.78363 5.89137 5.97875 6.16261 6.56482 6.74317 6.98514 7.00952 7.33330 7.55577 8.90298 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030576 B = 0.004617 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.534609 B = 6063.188928 C = 6663.721540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.276 3.724 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.697 5.697 14 C 0.537 3.463 15 O -0.589 6.589 16 C -0.106 4.106 17 C -0.147 4.147 18 C -0.078 4.078 19 C -0.146 4.146 20 C -0.104 4.104 21 C 0.205 3.795 22 N -0.866 5.866 23 C -0.159 4.159 24 H 0.047 0.953 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.403 0.597 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 8.510 -18.285 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.346 5.346 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.110 4.110 17 C -0.168 4.168 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.161 4.161 21 C 0.100 3.900 22 N -0.408 5.408 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.232 0.768 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.850 8.371 -17.448 20.884 hybrid contribution 0.683 -0.123 0.713 0.995 sum -7.168 8.248 -16.735 19.986 Atomic orbital electron populations 1.21678 0.97154 0.99158 1.00113 1.21780 0.93628 0.99072 1.01409 1.18432 0.93883 0.89233 0.81148 0.98409 1.21600 0.91223 1.39007 1.06837 0.91022 1.25784 1.03460 0.94276 0.94912 1.70059 1.37058 1.38329 1.09894 0.85294 0.78921 0.77876 0.78216 1.18398 1.21018 1.20315 1.46202 1.15346 1.55373 1.17680 1.18882 0.82032 0.78517 0.87989 1.90684 1.52556 1.61905 1.41997 1.19731 0.96180 1.01409 0.93654 1.21254 0.99602 1.02727 0.93227 1.21070 0.95921 0.95497 0.97153 1.19949 0.94454 1.04143 0.96565 1.20710 1.03008 0.99852 0.92532 1.17496 0.87514 0.92569 0.92467 1.42450 1.13840 1.64201 1.20351 1.20602 0.96678 1.03093 0.97904 0.93390 0.95530 0.94165 0.93986 0.90730 0.92568 0.76185 0.85014 0.82479 0.90243 0.90934 0.89882 0.75850 0.76758 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.52 71.98 0.61 -5.27 16 2 C -0.12 -6.15 5.45 30.59 0.17 -5.98 16 3 C 0.28 14.78 2.24 44.25 0.10 14.88 16 4 H 0.00 -0.13 7.57 -2.39 -0.02 -0.14 16 5 C -0.55 -29.74 8.73 25.60 0.22 -29.51 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.10 11.29 21.45 0.24 -52.86 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.70 -31.07 4.97 -448.95 -2.23 -33.30 16 14 C 0.54 23.78 6.35 86.79 0.55 24.33 16 15 O -0.59 -30.41 13.49 -3.88 -0.05 -30.46 16 16 C -0.11 -3.71 5.87 -20.11 -0.12 -3.82 16 17 C -0.15 -4.08 9.54 22.54 0.21 -3.87 16 18 C -0.08 -1.65 9.67 22.21 0.21 -1.44 16 19 C -0.15 -2.91 5.90 -19.68 -0.12 -3.03 16 20 C -0.10 -1.20 9.56 71.24 0.68 -0.52 16 21 C 0.21 4.82 6.73 38.17 0.26 5.08 16 22 N -0.87 -13.81 8.99 -51.45 -0.46 -14.27 16 23 C -0.16 -5.02 9.44 22.67 0.21 -4.80 16 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.03 1.34 7.85 -2.39 -0.02 1.33 16 26 H 0.04 1.88 5.66 -2.39 -0.01 1.87 16 27 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 4.22 5.95 -2.39 -0.01 4.20 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.40 15.36 6.57 -92.71 -0.61 14.75 16 31 H 0.13 3.34 6.40 -2.91 -0.02 3.32 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.65 6.53 -2.39 -0.02 0.63 16 35 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 36 H 0.41 4.24 6.81 -92.70 -0.63 3.61 16 37 H 0.40 5.83 8.84 -92.71 -0.82 5.01 16 38 H 0.11 3.89 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -70.40 309.32 2.02 -68.38 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.95 Total: 30.58 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 3.45 Total: -12.65 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -2.45 Total: -100.43 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.40 2.02 -68.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.784 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds