Wall clock time and date at job start Mon Mar 30 2020 04:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 H 1.09001 * 109.47585 * 54.99162 * 3 2 1 5 5 C 1.50696 * 109.47185 * 175.00327 * 3 2 1 6 6 H 1.07995 * 120.00774 * 119.99716 * 5 3 2 7 7 C 1.37883 * 119.99725 * 299.99294 * 5 3 2 8 8 N 1.31518 * 119.99722 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47041 * 89.99853 * 9 7 5 11 11 H 1.48500 * 109.47153 * 210.00232 * 9 7 5 12 12 H 1.48496 * 109.46965 * 330.00194 * 9 7 5 13 13 N 1.46505 * 109.46810 * 294.99747 * 3 2 1 14 14 C 1.34770 * 120.00284 * 85.00077 * 13 3 2 15 15 O 1.21286 * 119.99886 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00293 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 40.00174 * 16 14 13 18 18 N 1.46896 * 109.47239 * 160.00327 * 16 14 13 19 19 C 1.50703 * 109.47064 * 280.00210 * 16 14 13 20 20 C 1.38233 * 119.99662 * 279.72368 * 19 16 14 21 21 C 1.38238 * 119.99748 * 179.80858 * 20 19 16 22 22 C 1.38238 * 119.99869 * 0.39869 * 21 20 19 23 23 C 1.38232 * 120.00036 * 359.86136 * 22 21 20 24 24 C 1.38232 * 120.00031 * 359.94639 * 23 22 21 25 25 H 1.08998 * 109.47426 * 300.00421 * 1 2 3 26 26 H 1.09000 * 109.46812 * 60.00311 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46901 * 239.99618 * 2 1 3 29 29 H 1.09000 * 109.46812 * 119.99689 * 2 1 3 30 30 H 0.97001 * 119.99977 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00069 * 265.00003 * 13 3 2 32 32 H 1.00907 * 110.99811 * 296.04225 * 18 16 14 33 33 H 1.00900 * 111.00550 * 59.99964 * 18 16 14 34 34 H 1.08003 * 120.00479 * 0.02562 * 20 19 16 35 35 H 1.07997 * 120.00351 * 180.22988 * 21 20 19 36 36 H 1.08003 * 120.00083 * 179.82956 * 22 21 20 37 37 H 1.08001 * 119.99800 * 179.97438 * 23 22 21 38 38 H 1.08005 * 120.00320 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4416 2.1143 2.0849 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0280 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3393 2.6326 -0.4343 16 6 0.0367 3.3384 -2.6547 17 1 0.3966 2.7506 -3.4991 18 7 -1.4270 3.4438 -2.7197 19 6 0.6425 4.7174 -2.7081 20 6 0.0471 5.7607 -2.0241 21 6 0.6049 7.0247 -2.0698 22 6 1.7534 7.2471 -2.8063 23 6 2.3457 6.2049 -3.4947 24 6 1.7902 4.9401 -3.4457 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0616 2.9496 31 1 2.2720 2.1230 -1.9979 32 1 -1.8543 2.5302 -2.7506 33 1 -1.7854 3.9847 -1.9470 34 1 -0.8519 5.5876 -1.4510 35 1 0.1419 7.8390 -1.5324 36 1 2.1877 8.2352 -2.8443 37 1 3.2428 6.3788 -4.0704 38 1 2.2531 4.1257 -3.9832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:57 Heat of formation + Delta-G solvation = -21.767040 kcal Electronic energy + Delta-G solvation = -19921.518752 eV Core-core repulsion = 16956.212802 eV Total energy + Delta-G solvation = -2965.305950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90934 -38.47891 -35.41570 -34.18567 -32.41304 -31.06446 -30.74307 -30.17809 -27.27941 -25.39084 -23.06195 -22.46895 -21.67940 -20.00695 -19.35598 -17.36809 -17.12577 -16.00843 -15.63181 -15.47619 -14.92974 -14.56903 -14.39152 -14.22879 -13.53455 -13.27392 -12.94649 -12.72537 -12.53974 -12.21913 -11.90601 -11.55146 -11.29979 -11.00486 -10.98114 -10.89833 -10.83627 -10.37218 -10.23062 -9.77154 -9.64103 -9.08607 -8.91180 -8.79748 -8.53590 -8.24695 -7.86526 -6.14605 -4.24034 1.41815 1.52064 3.22671 3.26721 3.29737 3.31675 3.84423 4.12893 4.36880 4.67346 4.92395 4.95990 5.08594 5.16733 5.21279 5.35455 5.49623 5.59558 5.73676 6.03153 6.12714 6.33636 6.38836 6.52355 6.59344 6.60020 6.66965 6.97691 7.03814 7.09036 7.15220 7.31719 7.40340 7.45878 7.58262 7.69340 7.86945 8.14808 8.61590 8.73975 9.05972 9.43193 10.90698 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.006445 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.442990 B = 4343.260105 C = 5430.903327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.475 3.525 15 O -0.552 6.552 16 C 0.109 3.891 17 H 0.103 0.897 18 N -0.818 5.818 19 C -0.063 4.063 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.345 0.655 33 H 0.348 0.652 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 8.129 -10.646 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.257 3.743 15 O -0.431 6.431 16 C -0.007 4.007 17 H 0.121 0.879 18 N -0.347 5.347 19 C -0.064 4.064 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.372 8.356 -10.462 14.085 hybrid contribution 1.390 -0.588 0.766 1.693 sum -2.982 7.768 -9.696 12.776 Atomic orbital electron populations 1.21825 0.98438 0.98006 1.01012 1.21933 0.92529 0.99844 1.02326 1.18789 0.94261 0.89123 0.81078 0.93457 1.21229 0.90709 1.38949 1.06312 0.92105 1.24886 0.98609 0.94780 0.95380 1.69893 1.35141 1.37635 1.09353 0.86465 0.84874 0.77666 0.78225 1.20561 1.21037 1.19821 1.46542 1.14450 1.55195 1.18451 1.21395 0.83262 0.79569 0.90063 1.90665 1.51655 1.60616 1.40203 1.20449 0.90203 0.93681 0.96350 0.87889 1.59235 1.02418 1.21788 1.51296 1.19400 0.95555 0.93675 0.97782 1.20924 0.99695 0.92541 0.98404 1.21097 0.96445 0.96923 0.99397 1.21119 0.96232 0.98989 0.97805 1.21061 0.99817 0.92934 0.99897 1.20984 0.95398 0.97338 0.99008 0.93218 0.94538 0.95812 0.95029 0.88250 0.92562 0.78011 0.84188 0.83737 0.86111 0.86196 0.86331 0.86065 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 37.16 0.32 -2.66 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.22 5.02 -54.93 -0.28 -14.49 16 14 C 0.47 9.03 5.61 -10.99 -0.06 8.97 16 15 O -0.55 -12.22 13.39 5.55 0.07 -12.15 16 16 C 0.11 1.60 3.39 -70.02 -0.24 1.37 16 17 H 0.10 1.34 8.00 -51.93 -0.42 0.92 16 18 N -0.82 -11.07 8.81 -6.65 -0.06 -11.13 16 19 C -0.06 -0.92 4.94 -104.62 -0.52 -1.44 16 20 C -0.10 -1.39 9.29 -39.58 -0.37 -1.76 16 21 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 22 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 24 C -0.11 -1.43 9.67 -39.58 -0.38 -1.81 16 25 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 26 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.96 8.54 -40.82 -0.35 6.61 16 32 H 0.35 4.42 9.06 -39.29 -0.36 4.06 16 33 H 0.35 4.85 6.92 -39.29 -0.27 4.58 16 34 H 0.12 1.69 6.65 -52.48 -0.35 1.34 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.37 8.04 -52.48 -0.42 0.94 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -29.85 313.39 -8.29 -38.15 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.22 Total: 15.66 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -3.14 Total: -12.28 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.29 Total: -49.70 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.85 -8.29 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.379 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds