Wall clock time and date at job start Mon Mar 30 2020 04:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 H 1.09001 * 109.47585 * 54.99162 * 3 2 1 5 5 C 1.50696 * 109.47185 * 175.00327 * 3 2 1 6 6 H 1.07995 * 120.00774 * 119.99716 * 5 3 2 7 7 C 1.37883 * 119.99725 * 299.99294 * 5 3 2 8 8 N 1.31518 * 119.99722 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47041 * 89.99853 * 9 7 5 11 11 H 1.48500 * 109.47153 * 210.00232 * 9 7 5 12 12 H 1.48496 * 109.46965 * 330.00194 * 9 7 5 13 13 N 1.46505 * 109.46810 * 294.99747 * 3 2 1 14 14 C 1.34770 * 120.00284 * 85.00077 * 13 3 2 15 15 O 1.21286 * 119.99886 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00293 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 40.00174 * 16 14 13 18 18 N 1.46896 * 109.47239 * 160.00327 * 16 14 13 19 19 C 1.50703 * 109.47064 * 280.00210 * 16 14 13 20 20 C 1.38233 * 119.99662 * 279.72368 * 19 16 14 21 21 C 1.38238 * 119.99748 * 179.80858 * 20 19 16 22 22 C 1.38238 * 119.99869 * 0.39869 * 21 20 19 23 23 C 1.38232 * 120.00036 * 359.86136 * 22 21 20 24 24 C 1.38232 * 120.00031 * 359.94639 * 23 22 21 25 25 H 1.08998 * 109.47426 * 300.00421 * 1 2 3 26 26 H 1.09000 * 109.46812 * 60.00311 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46901 * 239.99618 * 2 1 3 29 29 H 1.09000 * 109.46812 * 119.99689 * 2 1 3 30 30 H 0.97001 * 119.99977 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00069 * 265.00003 * 13 3 2 32 32 H 1.00907 * 110.99811 * 296.04225 * 18 16 14 33 33 H 1.00900 * 111.00550 * 59.99964 * 18 16 14 34 34 H 1.08003 * 120.00479 * 0.02562 * 20 19 16 35 35 H 1.07997 * 120.00351 * 180.22988 * 21 20 19 36 36 H 1.08003 * 120.00083 * 179.82956 * 22 21 20 37 37 H 1.08001 * 119.99800 * 179.97438 * 23 22 21 38 38 H 1.08005 * 120.00320 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.4416 2.1143 2.0849 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0280 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3672 15 8 -0.3393 2.6326 -0.4343 16 6 0.0367 3.3384 -2.6547 17 1 0.3966 2.7506 -3.4991 18 7 -1.4270 3.4438 -2.7197 19 6 0.6425 4.7174 -2.7081 20 6 0.0471 5.7607 -2.0241 21 6 0.6049 7.0247 -2.0698 22 6 1.7534 7.2471 -2.8063 23 6 2.3457 6.2049 -3.4947 24 6 1.7902 4.9401 -3.4457 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0616 2.9496 31 1 2.2720 2.1230 -1.9979 32 1 -1.8543 2.5302 -2.7506 33 1 -1.7854 3.9847 -1.9470 34 1 -0.8519 5.5876 -1.4510 35 1 0.1419 7.8390 -1.5324 36 1 2.1877 8.2352 -2.8443 37 1 3.2428 6.3788 -4.0704 38 1 2.2531 4.1257 -3.9832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:56 Heat of formation + Delta-G solvation = -42.141624 kcal Electronic energy + Delta-G solvation = -19922.402260 eV Core-core repulsion = 16956.212802 eV Total energy + Delta-G solvation = -2966.189458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25546 -39.71537 -37.14741 -35.48635 -34.31489 -32.78867 -31.81631 -31.20162 -29.15027 -26.74546 -24.91880 -23.44218 -22.97894 -21.62724 -21.00852 -19.02535 -18.20208 -17.58662 -17.29645 -16.81009 -16.32844 -15.96081 -15.77473 -15.49945 -15.09420 -14.63204 -14.24817 -14.11299 -13.87365 -13.62346 -13.40949 -13.20177 -13.09688 -12.87190 -12.71742 -12.20522 -12.10046 -11.97704 -11.84186 -11.60800 -11.22246 -11.06891 -10.56281 -9.99845 -9.77617 -9.66047 -9.45097 -8.17755 -6.35200 0.41177 0.54417 1.42863 1.43189 1.53760 1.78369 2.34690 2.61437 2.94906 3.11607 3.56282 3.84168 3.93959 4.03634 4.18699 4.29700 4.36074 4.46174 4.54326 4.65745 4.72891 4.78085 5.02885 5.07402 5.17666 5.22663 5.40898 5.53796 5.56700 5.60565 5.64297 5.65436 5.76872 5.87558 5.96707 6.13003 6.15501 6.35279 6.73048 6.95357 7.31525 7.53360 8.87310 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018291 B = 0.006445 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.442990 B = 4343.260105 C = 5430.903327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.473 3.527 15 O -0.587 6.587 16 C 0.124 3.876 17 H 0.127 0.873 18 N -0.809 5.809 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.350 0.650 33 H 0.345 0.655 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 8.893 -12.693 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.346 5.346 14 C 0.258 3.742 15 O -0.469 6.469 16 C 0.008 3.992 17 H 0.145 0.855 18 N -0.338 5.338 19 C -0.086 4.086 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.236 0.764 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.099 9.133 -12.556 15.833 hybrid contribution 0.947 -0.745 1.406 1.852 sum -2.152 8.388 -11.150 14.118 Atomic orbital electron populations 1.21661 0.96903 0.99153 1.00159 1.21779 0.93827 0.99107 1.01307 1.18340 0.93574 0.89142 0.81449 0.98861 1.21583 0.91526 1.38778 1.06670 0.91149 1.25760 1.03238 0.94388 0.95047 1.70048 1.37049 1.38417 1.09882 0.85415 0.79272 0.77409 0.78697 1.20561 1.20894 1.18299 1.46311 1.15491 1.55397 1.17362 1.22287 0.82130 0.78540 0.91276 1.90649 1.52563 1.61601 1.42050 1.20419 0.90671 0.93957 0.94136 0.85545 1.59269 1.01819 1.21959 1.50784 1.19483 0.96669 0.93272 0.99191 1.21072 1.00083 0.93615 0.99052 1.21390 0.96959 0.96818 0.99712 1.21518 0.95624 1.00365 0.96752 1.21459 1.00509 0.92481 0.99705 1.21297 0.94856 0.98627 0.98808 0.95791 0.93593 0.93546 0.93946 0.91143 0.92629 0.76396 0.83660 0.84044 0.86870 0.84463 0.83631 0.83415 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.52 71.98 0.61 -4.76 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.20 2.24 44.24 0.10 14.30 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.48 11.29 21.45 0.24 -52.23 16 9 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 N -0.70 -28.19 5.02 -446.10 -2.24 -30.43 16 14 C 0.47 17.95 5.61 87.66 0.49 18.44 16 15 O -0.59 -26.64 13.39 -3.05 -0.04 -26.68 16 16 C 0.12 3.50 3.39 43.43 0.15 3.65 16 17 H 0.13 2.97 8.00 -2.39 -0.02 2.95 16 18 N -0.81 -21.21 8.81 -174.95 -1.54 -22.76 16 19 C -0.09 -2.37 4.94 -19.87 -0.10 -2.47 16 20 C -0.12 -3.38 9.29 22.27 0.21 -3.17 16 21 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 22 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 23 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 24 C -0.12 -2.81 9.67 22.27 0.22 -2.59 16 25 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 26 H 0.05 1.91 5.65 -2.39 -0.01 1.90 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.40 13.90 8.54 -92.71 -0.79 13.10 16 32 H 0.35 8.59 9.06 -89.69 -0.81 7.77 16 33 H 0.35 9.62 6.92 -89.69 -0.62 9.00 16 34 H 0.11 3.23 6.65 -2.91 -0.02 3.21 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.14 2.72 8.04 -2.91 -0.02 2.70 16 Total: -1.00 -65.61 313.39 0.50 -65.12 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -1.13 Total: 40.42 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.18 Total: -17.47 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.54 Total: -105.42 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.04 Total: -26.68 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.61 0.50 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.975 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds