Wall clock time and date at job start Mon Mar 30 2020 05:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99437 * 2 1 4 4 N 1.34768 * 120.00464 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00230 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47405 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47093 * 180.02562 * 6 5 4 8 8 C 1.46902 * 110.99923 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47245 * 34.99583 * 8 7 6 10 10 C 1.50705 * 109.47055 * 275.00294 * 8 7 6 11 11 H 1.07997 * 119.99751 * 122.44026 * 10 8 7 12 12 C 1.37876 * 119.99601 * 302.16138 * 10 8 7 13 13 N 1.31518 * 120.00319 * 6.24869 * 12 10 8 14 14 Si 1.86793 * 119.99825 * 186.25339 * 12 10 8 15 15 H 1.48499 * 109.47525 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47448 * 119.99956 * 14 12 10 17 17 H 1.48502 * 109.47177 * 239.99692 * 14 12 10 18 18 C 1.50698 * 109.47273 * 154.99880 * 8 7 6 19 19 C 1.38235 * 119.99791 * 30.25313 * 18 8 7 20 20 C 1.38236 * 119.99560 * 179.81170 * 19 18 8 21 21 C 1.38225 * 120.00410 * 0.39482 * 20 19 18 22 22 C 1.38236 * 120.00074 * 359.85223 * 21 20 19 23 23 C 1.38236 * 120.00010 * 359.96555 * 22 21 20 24 24 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47257 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00454 * 1 2 3 27 27 H 0.96999 * 120.00426 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.46606 * 60.00101 * 5 4 2 29 29 H 1.08998 * 109.47228 * 300.00855 * 5 4 2 30 30 H 1.08996 * 109.46976 * 60.00001 * 6 5 4 31 31 H 1.09001 * 109.46917 * 300.00027 * 6 5 4 32 32 H 1.00899 * 111.00179 * 56.04863 * 7 6 5 33 33 H 0.96991 * 120.00270 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.00069 * 359.97438 * 19 18 8 35 35 H 1.08004 * 119.99772 * 180.22599 * 20 19 18 36 36 H 1.07998 * 120.00372 * 179.83544 * 21 20 19 37 37 H 1.08003 * 120.00475 * 179.97438 * 22 21 20 38 38 H 1.07992 * 120.00193 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1561 -2.6094 0.0010 7 7 5.6251 -2.6093 0.0022 8 6 6.1517 -3.9807 0.0015 9 1 5.4965 -4.6212 -0.5890 10 6 6.2149 -4.4952 1.4165 11 1 5.6868 -5.3976 1.6871 12 6 6.9516 -3.8170 2.3643 13 7 7.4977 -2.6580 2.0672 14 14 7.1743 -4.5444 4.0703 15 1 6.4653 -5.8468 4.1496 16 1 8.6207 -4.7507 4.3356 17 1 6.6133 -3.6136 5.0824 18 6 7.5343 -3.9876 -0.5979 19 6 8.3483 -2.8776 -0.4708 20 6 9.6180 -2.8854 -1.0172 21 6 10.0707 -4.0001 -1.6978 22 6 9.2549 -5.1083 -1.8293 23 6 7.9865 -5.1019 -1.2797 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6961 -2.0072 0.0005 28 1 4.0088 -0.6530 0.8911 29 1 4.0096 -0.6532 -0.8888 30 1 3.7931 -3.1230 -0.8892 31 1 3.7924 -3.1235 0.8907 32 1 5.9860 -2.0835 0.7840 33 1 8.0162 -2.1811 2.7338 34 1 7.9932 -2.0052 0.0577 35 1 10.2553 -2.0195 -0.9148 36 1 11.0618 -4.0053 -2.1270 37 1 9.6084 -5.9791 -2.3614 38 1 7.3490 -5.9675 -1.3828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:14 Heat of formation + Delta-G solvation = -15.536960 kcal Electronic energy + Delta-G solvation = -19366.563995 eV Core-core repulsion = 16401.528201 eV Total energy + Delta-G solvation = -2965.035794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34243 -38.25721 -35.97034 -34.41561 -32.14326 -30.78209 -29.86157 -29.56648 -27.34157 -25.59822 -22.75204 -21.75951 -20.97289 -20.37711 -19.79795 -16.73017 -16.65642 -15.98398 -15.62785 -15.41755 -15.02607 -14.20573 -13.98673 -13.92254 -13.37251 -13.22298 -12.80224 -12.54402 -12.35996 -12.26199 -11.98906 -11.75437 -11.49308 -11.14538 -11.05702 -10.85304 -10.73814 -10.38277 -10.03144 -9.75689 -9.67381 -9.56715 -8.83195 -8.77554 -7.81578 -7.44946 -7.13214 -6.13624 -4.38285 2.50734 2.62024 2.78584 3.16329 3.26385 3.28492 3.43112 4.24380 4.90005 4.95723 5.06991 5.12011 5.34356 5.43239 5.67627 5.71799 5.82285 5.88437 5.97703 6.08217 6.15977 6.42856 6.47013 6.58449 6.68277 6.72099 6.83996 6.88035 7.13984 7.28639 7.52392 7.59577 7.68278 7.76770 7.92055 8.01173 8.23596 8.34312 8.38911 8.76002 9.01200 9.35874 10.73236 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.005580 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.600619 B = 5016.719125 C = 6008.786712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.553 6.553 4 N -0.725 5.725 5 C 0.118 3.882 6 C 0.059 3.941 7 N -0.687 5.687 8 C 0.240 3.760 9 H 0.036 0.964 10 C -0.543 4.543 11 H 0.058 0.942 12 C 0.074 3.926 13 N -0.877 5.877 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.283 1.283 18 C -0.020 4.020 19 C -0.058 4.058 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.399 0.601 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.370 0.630 33 H 0.268 0.732 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -0.055 -4.030 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.291 3.709 3 O -0.431 6.431 4 N -0.377 5.377 5 C -0.005 4.005 6 C -0.072 4.072 7 N -0.326 5.326 8 C 0.131 3.869 9 H 0.054 0.946 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.130 4.130 13 N -0.515 5.515 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.209 1.209 18 C -0.021 4.021 19 C -0.076 4.076 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.153 4.153 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.233 0.767 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.197 0.803 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.772 0.933 -4.598 8.239 hybrid contribution 0.000 -1.282 2.003 2.378 sum -6.772 -0.349 -2.596 7.261 Atomic orbital electron populations 1.21837 0.92199 1.03972 1.04952 1.20752 0.90420 0.83701 0.76014 1.90724 1.70819 1.31473 1.50092 1.46145 1.08325 1.08431 1.74773 1.21400 0.77875 0.98778 1.02474 1.21811 0.92590 0.93123 0.99665 1.60885 1.02655 1.16734 1.52310 1.18075 0.88595 0.86650 0.93553 0.94626 1.21719 1.31234 1.11180 0.94010 0.92346 1.24986 0.94228 0.94749 0.98989 1.69481 1.34117 1.13385 1.34508 0.86518 0.78220 0.79346 0.83862 1.19817 1.20673 1.20929 1.20148 0.98005 0.92134 0.91798 1.21415 0.91933 1.00007 0.94256 1.21112 0.97336 0.97650 1.00399 1.20777 0.98860 0.94848 1.02599 1.20757 0.95066 0.97818 1.02548 1.20842 0.95983 0.98289 1.00210 0.90713 0.89027 0.89033 0.76745 0.91771 0.91112 0.92640 0.95125 0.80333 0.92092 0.83622 0.88052 0.88287 0.88093 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.39 36.01 0.37 -1.12 16 2 C 0.50 7.16 7.94 -10.99 -0.09 7.07 16 3 O -0.55 -10.54 17.10 5.55 0.09 -10.45 16 4 N -0.72 -9.82 5.56 -60.29 -0.33 -10.15 16 5 C 0.12 2.00 5.93 -4.04 -0.02 1.98 16 6 C 0.06 1.07 5.59 -3.83 -0.02 1.05 16 7 N -0.69 -14.96 5.42 -109.19 -0.59 -15.55 16 8 C 0.24 5.56 2.51 -70.01 -0.18 5.39 16 9 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 10 C -0.54 -13.61 8.62 -34.44 -0.30 -13.91 16 11 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 12 C 0.07 1.85 5.09 -17.82 -0.09 1.76 16 13 N -0.88 -21.94 7.93 55.43 0.44 -21.50 16 14 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 19 C -0.06 -1.32 7.75 -39.58 -0.31 -1.63 16 20 C -0.15 -3.03 10.05 -39.59 -0.40 -3.43 16 21 C -0.15 -2.94 10.05 -39.59 -0.40 -3.33 16 22 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 23 C -0.13 -2.85 9.70 -39.58 -0.38 -3.24 16 24 H 0.07 0.47 7.92 -51.93 -0.41 0.05 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.40 4.16 8.31 -40.82 -0.34 3.82 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 32 H 0.37 8.75 5.48 -39.29 -0.22 8.53 16 33 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.15 3.52 5.55 -52.49 -0.29 3.23 16 35 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -28.62 317.28 -8.76 -37.38 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -5.42 Total: 13.92 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.71 Total: -13.55 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.49 Total: -47.20 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.62 -8.76 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.842 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds