Wall clock time and date at job start Mon Mar 30 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99437 * 2 1 4 4 N 1.34768 * 120.00464 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00230 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47405 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47093 * 180.02562 * 6 5 4 8 8 C 1.46902 * 110.99923 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47245 * 34.99583 * 8 7 6 10 10 C 1.50705 * 109.47055 * 275.00294 * 8 7 6 11 11 H 1.07997 * 119.99751 * 122.44026 * 10 8 7 12 12 C 1.37876 * 119.99601 * 302.16138 * 10 8 7 13 13 N 1.31518 * 120.00319 * 6.24869 * 12 10 8 14 14 Si 1.86793 * 119.99825 * 186.25339 * 12 10 8 15 15 H 1.48499 * 109.47525 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47448 * 119.99956 * 14 12 10 17 17 H 1.48502 * 109.47177 * 239.99692 * 14 12 10 18 18 C 1.50698 * 109.47273 * 154.99880 * 8 7 6 19 19 C 1.38235 * 119.99791 * 30.25313 * 18 8 7 20 20 C 1.38236 * 119.99560 * 179.81170 * 19 18 8 21 21 C 1.38225 * 120.00410 * 0.39482 * 20 19 18 22 22 C 1.38236 * 120.00074 * 359.85223 * 21 20 19 23 23 C 1.38236 * 120.00010 * 359.96555 * 22 21 20 24 24 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47257 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00454 * 1 2 3 27 27 H 0.96999 * 120.00426 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.46606 * 60.00101 * 5 4 2 29 29 H 1.08998 * 109.47228 * 300.00855 * 5 4 2 30 30 H 1.08996 * 109.46976 * 60.00001 * 6 5 4 31 31 H 1.09001 * 109.46917 * 300.00027 * 6 5 4 32 32 H 1.00899 * 111.00179 * 56.04863 * 7 6 5 33 33 H 0.96991 * 120.00270 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.00069 * 359.97438 * 19 18 8 35 35 H 1.08004 * 119.99772 * 180.22599 * 20 19 18 36 36 H 1.07998 * 120.00372 * 179.83544 * 21 20 19 37 37 H 1.08003 * 120.00475 * 179.97438 * 22 21 20 38 38 H 1.07992 * 120.00193 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1561 -2.6094 0.0010 7 7 5.6251 -2.6093 0.0022 8 6 6.1517 -3.9807 0.0015 9 1 5.4965 -4.6212 -0.5890 10 6 6.2149 -4.4952 1.4165 11 1 5.6868 -5.3976 1.6871 12 6 6.9516 -3.8170 2.3643 13 7 7.4977 -2.6580 2.0672 14 14 7.1743 -4.5444 4.0703 15 1 6.4653 -5.8468 4.1496 16 1 8.6207 -4.7507 4.3356 17 1 6.6133 -3.6136 5.0824 18 6 7.5343 -3.9876 -0.5979 19 6 8.3483 -2.8776 -0.4708 20 6 9.6180 -2.8854 -1.0172 21 6 10.0707 -4.0001 -1.6978 22 6 9.2549 -5.1083 -1.8293 23 6 7.9865 -5.1019 -1.2797 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6961 -2.0072 0.0005 28 1 4.0088 -0.6530 0.8911 29 1 4.0096 -0.6532 -0.8888 30 1 3.7931 -3.1230 -0.8892 31 1 3.7924 -3.1235 0.8907 32 1 5.9860 -2.0835 0.7840 33 1 8.0162 -2.1811 2.7338 34 1 7.9932 -2.0052 0.0577 35 1 10.2553 -2.0195 -0.9148 36 1 11.0618 -4.0053 -2.1270 37 1 9.6084 -5.9791 -2.3614 38 1 7.3490 -5.9675 -1.3828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:13 Heat of formation + Delta-G solvation = -34.004786 kcal Electronic energy + Delta-G solvation = -19367.364820 eV Core-core repulsion = 16401.528201 eV Total energy + Delta-G solvation = -2965.836619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57023 -39.88374 -37.55427 -35.88711 -33.84208 -32.30064 -31.35106 -30.80997 -28.87624 -27.24792 -24.44135 -23.31630 -22.50481 -21.67639 -21.38422 -18.52666 -17.91342 -17.41792 -17.02604 -16.83482 -16.64666 -15.74468 -15.54542 -15.49942 -14.87516 -14.58607 -14.36433 -13.93726 -13.70758 -13.50366 -13.27671 -13.27145 -13.00174 -12.84146 -12.61661 -12.57707 -12.41502 -12.05521 -11.75140 -11.38812 -11.27238 -10.99449 -10.65577 -10.11697 -9.43333 -9.11240 -8.88285 -7.99404 -6.32480 0.87976 1.01786 1.35316 1.41145 1.47947 1.65971 2.29134 2.37418 3.07695 3.38540 3.92046 3.95368 4.17127 4.31369 4.39490 4.40688 4.54873 4.59176 4.64599 4.69507 4.81112 4.90156 5.00200 5.06604 5.15560 5.21282 5.22953 5.44995 5.52002 5.64541 5.69843 5.91929 6.05409 6.09349 6.34273 6.51303 6.58888 6.62272 6.95439 7.15887 7.29062 7.43845 8.81592 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.005580 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.600619 B = 5016.719125 C = 6008.786712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.714 5.714 5 C 0.133 3.867 6 C 0.067 3.933 7 N -0.693 5.693 8 C 0.240 3.760 9 H 0.034 0.966 10 C -0.558 4.558 11 H 0.048 0.952 12 C 0.040 3.960 13 N -0.884 5.884 14 Si 0.942 3.058 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.281 1.281 18 C -0.045 4.045 19 C -0.079 4.079 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.149 4.149 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.417 0.583 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.358 0.642 33 H 0.266 0.734 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -1.151 -4.710 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.367 5.367 5 C 0.008 3.992 6 C -0.064 4.064 7 N -0.330 5.330 8 C 0.131 3.869 9 H 0.053 0.947 10 C -0.597 4.597 11 H 0.066 0.934 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.046 4.046 19 C -0.097 4.097 20 C -0.174 4.174 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.168 4.168 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.183 0.817 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.149 -0.200 -5.291 8.896 hybrid contribution 0.122 -0.955 2.159 2.364 sum -7.026 -1.155 -3.133 7.779 Atomic orbital electron populations 1.21856 0.87261 1.06532 1.06052 1.21821 0.92673 0.82581 0.74233 1.90701 1.72421 1.33391 1.52577 1.46038 1.06804 1.09619 1.74255 1.20999 0.80163 0.97400 1.00597 1.21792 0.90791 0.93840 0.99967 1.60881 1.04589 1.15947 1.51567 1.18043 0.89199 0.87002 0.92678 0.94741 1.21858 1.31540 1.10916 0.95352 0.93399 1.25484 0.94322 0.95127 1.01275 1.69615 1.34021 1.13666 1.34849 0.85761 0.77569 0.78673 0.81097 1.19824 1.21159 1.20739 1.20261 0.98020 0.93143 0.93222 1.21311 0.93296 0.99570 0.95556 1.21375 0.96702 0.99113 1.00246 1.21187 1.00283 0.93898 1.01370 1.21171 0.94084 0.99023 1.01554 1.21095 0.97272 0.98062 1.00341 0.87471 0.87970 0.87662 0.74607 0.94285 0.92468 0.90986 0.95863 0.81696 0.92346 0.85753 0.86352 0.84737 0.84591 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.39 71.24 0.74 -1.60 16 2 C 0.50 13.73 7.94 87.66 0.70 14.43 16 3 O -0.61 -23.64 17.10 -3.07 -0.05 -23.69 16 4 N -0.71 -18.86 5.56 -463.06 -2.57 -21.43 16 5 C 0.13 4.64 5.93 86.38 0.51 5.15 16 6 C 0.07 2.45 5.59 86.30 0.48 2.94 16 7 N -0.69 -31.04 5.42 -499.36 -2.70 -33.75 16 8 C 0.24 11.31 2.51 43.42 0.11 11.42 16 9 H 0.03 1.57 7.74 -2.39 -0.02 1.56 16 10 C -0.56 -28.40 8.62 25.60 0.22 -28.18 16 11 H 0.05 2.47 7.82 -2.91 -0.02 2.44 16 12 C 0.04 2.04 5.09 84.65 0.43 2.47 16 13 N -0.88 -45.17 7.93 21.45 0.17 -45.00 16 14 Si 0.94 41.60 29.54 68.60 2.03 43.63 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 C -0.05 -2.11 4.77 -19.87 -0.09 -2.20 16 19 C -0.08 -3.64 7.75 22.27 0.17 -3.47 16 20 C -0.16 -6.29 10.05 22.27 0.22 -6.07 16 21 C -0.15 -5.32 10.05 22.27 0.22 -5.10 16 22 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 23 C -0.15 -6.16 9.70 22.27 0.22 -5.95 16 24 H 0.11 0.91 7.92 -2.38 -0.02 0.89 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.42 7.94 8.31 -92.71 -0.77 7.17 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.40 8.05 -2.39 -0.02 2.38 16 31 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.36 17.63 5.48 -89.69 -0.49 17.13 16 33 H 0.27 13.24 8.31 -92.72 -0.77 12.47 16 34 H 0.12 6.24 5.55 -2.91 -0.02 6.22 16 35 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.29 317.28 0.83 -62.46 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.20 Total: 38.77 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.16 Total: -20.99 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -5.11 Total: -100.18 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -63.29 0.83 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -63.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds