Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 N 1.46901 * 109.47173 * 119.99616 * 2 1 3 5 5 C 1.46903 * 111.00023 * 57.85200 * 4 2 1 6 6 H 1.09003 * 109.47000 * 19.64228 * 5 4 2 7 7 C 1.50701 * 109.46747 * 259.64888 * 5 4 2 8 8 H 1.07999 * 120.00263 * 328.81337 * 7 5 4 9 9 C 1.37880 * 119.99896 * 148.82432 * 7 5 4 10 10 N 1.31518 * 120.00107 * 172.27234 * 9 7 5 11 11 Si 1.86799 * 120.00004 * 352.26843 * 9 7 5 12 12 H 1.48496 * 109.47214 * 84.86045 * 11 9 7 13 13 H 1.48496 * 109.47410 * 204.86618 * 11 9 7 14 14 H 1.48508 * 109.46947 * 324.86271 * 11 9 7 15 15 C 1.50696 * 109.47344 * 139.64849 * 5 4 2 16 16 C 1.38230 * 119.99906 * 45.62116 * 15 5 4 17 17 C 1.38238 * 119.99647 * 179.81338 * 16 15 5 18 18 C 1.38234 * 120.00210 * 0.39351 * 17 16 15 19 19 C 1.38230 * 120.00026 * 359.86091 * 18 17 16 20 20 C 1.38234 * 120.00131 * 225.89656 * 15 5 4 21 21 C 1.50696 * 109.47403 * 239.99625 * 2 1 3 22 22 N 1.34774 * 119.99984 * 205.00042 * 21 2 1 23 23 O 1.21280 * 119.99814 * 25.00330 * 21 2 1 24 24 H 1.08998 * 109.47035 * 294.99057 * 1 2 3 25 25 H 1.08995 * 109.46624 * 54.99553 * 1 2 3 26 26 H 1.09002 * 109.46375 * 174.98766 * 1 2 3 27 27 H 1.08999 * 109.47849 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47278 * 300.00023 * 3 2 1 29 29 H 1.09005 * 109.47285 * 59.99463 * 3 2 1 30 30 H 1.00901 * 111.00476 * 181.80173 * 4 2 1 31 31 H 0.96998 * 119.99630 * 179.97438 * 10 9 7 32 32 H 1.07996 * 120.00222 * 359.97438 * 16 15 5 33 33 H 1.08006 * 120.00202 * 180.22966 * 17 16 15 34 34 H 1.08005 * 120.00282 * 179.83491 * 18 17 16 35 35 H 1.07999 * 120.00621 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.99950 * 359.97438 * 20 15 5 37 37 H 0.96998 * 120.00222 * 359.97438 * 22 21 2 38 38 H 0.97004 * 120.00198 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5072 -2.0678 1.2595 6 1 1.1810 -2.3776 0.2667 7 6 0.3416 -2.1283 2.2128 8 1 0.3046 -1.4639 3.0634 9 6 -0.6776 -3.0320 1.9991 10 7 -1.6156 -3.1922 2.9069 11 14 -0.7261 -4.0289 0.4201 12 1 0.1251 -5.2363 0.5706 13 1 -2.1245 -4.4411 0.1376 14 1 -0.2175 -3.2016 -0.7034 15 6 2.5978 -2.9898 1.7405 16 6 3.3736 -2.6345 2.8279 17 6 4.3716 -3.4820 3.2715 18 6 4.5990 -4.6812 2.6225 19 6 3.8267 -5.0342 1.5318 20 6 2.8262 -4.1884 1.0907 21 6 2.0324 -0.7105 -1.2304 22 7 3.2544 -1.2790 -1.2285 23 8 1.3371 -0.7706 -2.2222 24 1 -0.3633 0.4342 0.9314 25 1 -0.3632 0.5895 -0.8418 26 1 -0.3632 -1.0238 -0.0898 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.0279 -0.6803 1.2378 31 1 -2.3328 -3.8277 2.7564 32 1 3.1984 -1.6959 3.3326 33 1 4.9753 -3.2061 4.1235 34 1 5.3804 -5.3422 2.9674 35 1 4.0045 -5.9708 1.0245 36 1 2.2227 -4.4642 0.2385 37 1 3.8106 -1.2305 -0.4353 38 1 3.5780 -1.7360 -2.0206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055017685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -9.597654 kcal Electronic energy + Delta-G solvation = -20831.387118 eV Core-core repulsion = 17866.608872 eV Total energy + Delta-G solvation = -2964.778246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98889 -38.57809 -36.10733 -33.33189 -33.09319 -31.72338 -30.35393 -28.99027 -27.20703 -26.19692 -23.10792 -22.63264 -21.94374 -20.12276 -18.83371 -17.45894 -16.91414 -16.57142 -16.26286 -15.09237 -14.67056 -14.52858 -14.15276 -13.96739 -13.60978 -13.37774 -12.89231 -12.67645 -12.41775 -12.02842 -11.97761 -11.76129 -11.37349 -11.18374 -10.94992 -10.85795 -10.72926 -10.47925 -10.29382 -9.97227 -9.72561 -9.48286 -9.39740 -8.65192 -8.35080 -8.03213 -7.62373 -6.17435 -4.12405 1.95571 1.99220 2.97640 3.21554 3.30061 3.34440 3.78631 4.31686 4.37044 4.76187 5.10647 5.13809 5.38522 5.42276 5.45229 5.48718 5.59383 5.82425 5.95119 6.05812 6.13887 6.15843 6.31051 6.43042 6.49601 6.58755 6.63376 6.72886 6.95524 7.01312 7.03539 7.15183 7.25515 7.45655 7.50271 7.63627 7.71078 8.04008 8.51890 8.56292 8.96490 9.44825 10.94641 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.011157 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.970214 B = 2508.956048 C = 3355.733492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.103 3.897 3 C -0.133 4.133 4 N -0.653 5.653 5 C 0.208 3.792 6 H 0.032 0.968 7 C -0.477 4.477 8 H 0.087 0.913 9 C 0.079 3.921 10 N -0.886 5.886 11 Si 0.848 3.152 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.259 1.259 15 C -0.055 4.055 16 C -0.106 4.106 17 C -0.124 4.124 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.132 4.132 21 C 0.494 3.506 22 N -0.858 5.858 23 O -0.549 6.549 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.318 0.682 31 H 0.265 0.735 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.201 2.975 -3.661 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 C -0.191 4.191 4 N -0.286 5.286 5 C 0.101 3.899 6 H 0.050 0.950 7 C -0.515 4.515 8 H 0.105 0.895 9 C -0.124 4.124 10 N -0.523 5.523 11 Si 0.676 3.324 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.185 1.185 15 C -0.057 4.057 16 C -0.124 4.124 17 C -0.142 4.142 18 C -0.164 4.164 19 C -0.140 4.140 20 C -0.151 4.151 21 C 0.278 3.722 22 N -0.422 5.422 23 O -0.424 6.424 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.226 0.774 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.902 3.207 -3.748 11.966 hybrid contribution 0.797 -1.640 -1.374 2.283 sum 11.699 1.567 -5.122 12.867 Atomic orbital electron populations 1.21665 0.90557 1.03713 1.01662 1.21290 0.98552 0.94212 0.85138 1.21782 1.00306 0.93909 1.03058 1.61029 1.12158 1.19171 1.36196 1.18925 0.91839 0.82279 0.96853 0.95036 1.20789 1.00922 1.19192 1.10580 0.89502 1.24921 0.95631 0.96069 0.95819 1.69870 1.13566 1.35510 1.33384 0.87321 0.77851 0.81525 0.85709 1.19641 1.21189 1.18459 1.20862 0.93509 0.96365 0.94953 1.20980 0.94963 1.00218 0.96259 1.21076 0.98737 0.94843 0.99534 1.20891 1.00750 0.97411 0.97347 1.20958 0.96644 0.98944 0.97477 1.21013 0.98104 0.95307 1.00627 1.22185 0.80747 0.78196 0.91116 1.43949 1.19074 1.59903 1.19275 1.90670 1.56042 1.59711 1.35969 0.90346 0.93180 0.91338 0.92963 0.92093 0.90251 0.86310 0.92442 0.85623 0.86962 0.87249 0.87268 0.87668 0.77393 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 7.04 37.16 0.26 -2.10 16 2 C 0.10 1.80 0.90 -132.76 -0.12 1.68 16 3 C -0.13 -1.81 8.73 37.16 0.32 -1.49 16 4 N -0.65 -11.70 5.50 -96.63 -0.53 -12.23 16 5 C 0.21 4.46 0.95 -70.02 -0.07 4.39 16 6 H 0.03 0.74 2.77 -51.93 -0.14 0.60 16 7 C -0.48 -12.42 7.77 -34.44 -0.27 -12.69 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 10 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 11 Si 0.85 21.31 24.63 -169.99 -4.19 17.12 16 12 H -0.27 -6.63 6.82 56.52 0.39 -6.25 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.26 -6.56 6.03 56.52 0.34 -6.22 16 15 C -0.06 -1.09 4.66 -104.63 -0.49 -1.58 16 16 C -0.11 -1.87 8.77 -39.58 -0.35 -2.22 16 17 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 18 C -0.15 -2.22 10.05 -39.59 -0.40 -2.61 16 19 C -0.12 -2.03 10.05 -39.59 -0.40 -2.42 16 20 C -0.13 -2.54 9.09 -39.58 -0.36 -2.89 16 21 C 0.49 8.96 5.43 -10.99 -0.06 8.90 16 22 N -0.86 -12.07 8.63 31.22 0.27 -11.80 16 23 O -0.55 -11.98 17.03 5.56 0.09 -11.88 16 24 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 26 H 0.07 1.60 5.14 -51.93 -0.27 1.33 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.32 4.84 6.08 -39.29 -0.24 4.60 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.13 2.17 7.86 -52.49 -0.41 1.76 16 33 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.11 2.12 6.45 -52.48 -0.34 1.78 16 37 H 0.40 4.82 7.25 -40.82 -0.30 4.52 16 38 H 0.39 4.94 8.93 -40.82 -0.36 4.57 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -31.42 304.29 -6.48 -37.90 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.07 Total: 14.99 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.41 Total: -13.26 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.51 Total: -49.46 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.19 Total: 17.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.42 -6.48 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.302 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds