Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 N 1.46901 * 109.47173 * 119.99616 * 2 1 3 5 5 C 1.46903 * 111.00023 * 57.85200 * 4 2 1 6 6 H 1.09003 * 109.47000 * 19.64228 * 5 4 2 7 7 C 1.50701 * 109.46747 * 259.64888 * 5 4 2 8 8 H 1.07999 * 120.00263 * 328.81337 * 7 5 4 9 9 C 1.37880 * 119.99896 * 148.82432 * 7 5 4 10 10 N 1.31518 * 120.00107 * 172.27234 * 9 7 5 11 11 Si 1.86799 * 120.00004 * 352.26843 * 9 7 5 12 12 H 1.48496 * 109.47214 * 84.86045 * 11 9 7 13 13 H 1.48496 * 109.47410 * 204.86618 * 11 9 7 14 14 H 1.48508 * 109.46947 * 324.86271 * 11 9 7 15 15 C 1.50696 * 109.47344 * 139.64849 * 5 4 2 16 16 C 1.38230 * 119.99906 * 45.62116 * 15 5 4 17 17 C 1.38238 * 119.99647 * 179.81338 * 16 15 5 18 18 C 1.38234 * 120.00210 * 0.39351 * 17 16 15 19 19 C 1.38230 * 120.00026 * 359.86091 * 18 17 16 20 20 C 1.38234 * 120.00131 * 225.89656 * 15 5 4 21 21 C 1.50696 * 109.47403 * 239.99625 * 2 1 3 22 22 N 1.34774 * 119.99984 * 205.00042 * 21 2 1 23 23 O 1.21280 * 119.99814 * 25.00330 * 21 2 1 24 24 H 1.08998 * 109.47035 * 294.99057 * 1 2 3 25 25 H 1.08995 * 109.46624 * 54.99553 * 1 2 3 26 26 H 1.09002 * 109.46375 * 174.98766 * 1 2 3 27 27 H 1.08999 * 109.47849 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47278 * 300.00023 * 3 2 1 29 29 H 1.09005 * 109.47285 * 59.99463 * 3 2 1 30 30 H 1.00901 * 111.00476 * 181.80173 * 4 2 1 31 31 H 0.96998 * 119.99630 * 179.97438 * 10 9 7 32 32 H 1.07996 * 120.00222 * 359.97438 * 16 15 5 33 33 H 1.08006 * 120.00202 * 180.22966 * 17 16 15 34 34 H 1.08005 * 120.00282 * 179.83491 * 18 17 16 35 35 H 1.07999 * 120.00621 * 179.97438 * 19 18 17 36 36 H 1.08007 * 119.99950 * 359.97438 * 20 15 5 37 37 H 0.96998 * 120.00222 * 359.97438 * 22 21 2 38 38 H 0.97004 * 120.00198 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5072 -2.0678 1.2595 6 1 1.1810 -2.3776 0.2667 7 6 0.3416 -2.1283 2.2128 8 1 0.3046 -1.4639 3.0634 9 6 -0.6776 -3.0320 1.9991 10 7 -1.6156 -3.1922 2.9069 11 14 -0.7261 -4.0289 0.4201 12 1 0.1251 -5.2363 0.5706 13 1 -2.1245 -4.4411 0.1376 14 1 -0.2175 -3.2016 -0.7034 15 6 2.5978 -2.9898 1.7405 16 6 3.3736 -2.6345 2.8279 17 6 4.3716 -3.4820 3.2715 18 6 4.5990 -4.6812 2.6225 19 6 3.8267 -5.0342 1.5318 20 6 2.8262 -4.1884 1.0907 21 6 2.0324 -0.7105 -1.2304 22 7 3.2544 -1.2790 -1.2285 23 8 1.3371 -0.7706 -2.2222 24 1 -0.3633 0.4342 0.9314 25 1 -0.3632 0.5895 -0.8418 26 1 -0.3632 -1.0238 -0.0898 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.0279 -0.6803 1.2378 31 1 -2.3328 -3.8277 2.7564 32 1 3.1984 -1.6959 3.3326 33 1 4.9753 -3.2061 4.1235 34 1 5.3804 -5.3422 2.9674 35 1 4.0045 -5.9708 1.0245 36 1 2.2227 -4.4642 0.2385 37 1 3.8106 -1.2305 -0.4353 38 1 3.5780 -1.7360 -2.0206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055017685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -34.252063 kcal Electronic energy + Delta-G solvation = -20832.456213 eV Core-core repulsion = 17866.608872 eV Total energy + Delta-G solvation = -2965.847341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44985 -39.96146 -37.61802 -35.04550 -34.48948 -33.48081 -31.67996 -30.36173 -28.90981 -27.74748 -24.57711 -24.21777 -23.28627 -21.64266 -20.26290 -19.12945 -18.64699 -17.95345 -17.61453 -16.59591 -16.45073 -16.05435 -15.58560 -15.39375 -14.99771 -14.95990 -14.57556 -14.15912 -13.99573 -13.52344 -13.29495 -13.08945 -13.05715 -12.82542 -12.59372 -12.48474 -12.37140 -11.95267 -11.85306 -11.63729 -11.56043 -11.13878 -10.75858 -10.73467 -9.67898 -9.42556 -9.19547 -8.31934 -6.26360 0.61385 0.65674 1.17366 1.24761 1.28173 1.54763 2.23736 2.48785 2.93343 3.15743 3.30685 3.81555 4.01310 4.12377 4.18139 4.23451 4.32072 4.41580 4.66344 4.80259 4.82901 4.88372 4.91293 4.94490 4.99564 5.21338 5.27615 5.32862 5.43685 5.56592 5.70947 5.73000 5.74932 5.86046 5.99666 6.23836 6.28989 6.47613 6.73316 6.82707 7.22631 7.34108 8.84644 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.011157 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.970214 B = 2508.956048 C = 3355.733492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.101 3.899 3 C -0.126 4.126 4 N -0.650 5.650 5 C 0.220 3.780 6 H 0.014 0.986 7 C -0.460 4.460 8 H 0.052 0.948 9 C 0.032 3.968 10 N -0.936 5.936 11 Si 0.898 3.102 12 H -0.259 1.259 13 H -0.293 1.293 14 H -0.267 1.267 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.152 4.152 21 C 0.492 3.508 22 N -0.837 5.837 23 O -0.591 6.591 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.339 0.661 31 H 0.263 0.737 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.409 0.591 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.823 2.705 -3.549 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.006 3.994 3 C -0.184 4.184 4 N -0.283 5.283 5 C 0.111 3.889 6 H 0.032 0.968 7 C -0.498 4.498 8 H 0.070 0.930 9 C -0.167 4.167 10 N -0.577 5.577 11 Si 0.726 3.274 12 H -0.184 1.184 13 H -0.220 1.220 14 H -0.193 1.193 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.135 4.135 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.170 4.170 21 C 0.275 3.725 22 N -0.401 5.401 23 O -0.471 6.471 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.160 0.840 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 14.605 2.931 -3.633 15.332 hybrid contribution -0.163 -1.518 -1.359 2.044 sum 14.442 1.414 -4.991 15.345 Atomic orbital electron populations 1.21594 0.92986 1.01203 1.01639 1.21326 0.96846 0.96551 0.84687 1.21763 1.02052 0.90827 1.03718 1.60766 1.13605 1.17230 1.36746 1.18566 0.91357 0.84423 0.94517 0.96820 1.20962 1.02284 1.16999 1.09588 0.93015 1.25429 0.95880 0.97598 0.97756 1.69987 1.14936 1.37499 1.35305 0.86532 0.77269 0.80668 0.82938 1.18444 1.21975 1.19259 1.20592 0.94491 0.96340 0.96474 1.21068 0.95552 1.00954 0.95655 1.21456 0.97741 0.94301 0.99988 1.21352 1.00511 0.97396 0.95880 1.21268 0.95670 0.99322 0.97948 1.21030 0.99355 0.95840 1.00822 1.22235 0.81443 0.78203 0.90571 1.43727 1.17798 1.58372 1.20194 1.90653 1.57465 1.61545 1.37387 0.91149 0.92127 0.95249 0.90156 0.91421 0.89661 0.84008 0.92787 0.85687 0.83605 0.83470 0.84875 0.89408 0.75959 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 7.04 71.98 0.51 -4.26 16 2 C 0.10 3.44 0.90 2.78 0.00 3.44 16 3 C -0.13 -3.14 8.73 71.98 0.63 -2.52 16 4 N -0.65 -22.72 5.50 -459.62 -2.53 -25.24 16 5 C 0.22 9.42 0.95 43.42 0.04 9.46 16 6 H 0.01 0.67 2.77 -2.39 -0.01 0.66 16 7 C -0.46 -24.70 7.77 25.60 0.20 -24.50 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 C 0.03 1.82 5.47 84.65 0.46 2.28 16 10 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 11 Si 0.90 45.88 24.63 68.60 1.69 47.57 16 12 H -0.26 -12.58 6.82 99.48 0.68 -11.90 16 13 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 14 H -0.27 -13.83 6.03 99.48 0.60 -13.23 16 15 C -0.08 -2.95 4.66 -19.87 -0.09 -3.05 16 16 C -0.11 -3.75 8.77 22.27 0.20 -3.56 16 17 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 18 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 19 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 20 C -0.15 -5.57 9.09 22.27 0.20 -5.37 16 21 C 0.49 17.39 5.43 87.66 0.48 17.86 16 22 N -0.84 -21.89 8.63 -173.54 -1.50 -23.38 16 23 O -0.59 -25.83 17.03 -3.03 -0.05 -25.88 16 24 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 25 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 26 H 0.03 1.41 5.14 -2.39 -0.01 1.39 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.34 9.56 6.08 -89.69 -0.55 9.01 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.13 4.08 7.86 -2.91 -0.02 4.05 16 33 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.09 3.48 6.45 -2.91 -0.02 3.46 16 37 H 0.41 8.79 7.25 -92.71 -0.67 8.12 16 38 H 0.41 9.31 8.93 -92.70 -0.83 8.48 16 Total: -1.00 -71.65 304.29 0.12 -71.52 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -1.08 Total: 32.60 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.29 Total: -19.71 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.73 Total: -106.11 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.69 Total: 47.57 kcal Total: -71.65 0.12 -71.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.272 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds