Wall clock time and date at job start Mon Mar 30 2020 04:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00464 * 2 1 4 4 O 1.21285 * 119.99914 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00364 * 179.72542 * 3 2 1 6 6 H 1.09003 * 109.46955 * 60.27782 * 5 3 2 7 7 C 1.53000 * 109.47422 * 300.27797 * 5 3 2 8 8 N 1.46898 * 109.47447 * 180.27662 * 5 3 2 9 9 C 1.46896 * 111.00208 * 205.00391 * 8 5 3 10 10 H 1.09002 * 109.47534 * 34.99806 * 9 8 5 11 11 C 1.50697 * 109.47066 * 274.99648 * 9 8 5 12 12 H 1.08005 * 120.00026 * 117.24771 * 11 9 8 13 13 C 1.37877 * 120.00613 * 297.25239 * 11 9 8 14 14 N 1.31515 * 119.99539 * 10.12104 * 13 11 9 15 15 Si 1.86798 * 120.00722 * 190.11599 * 13 11 9 16 16 H 1.48506 * 109.46544 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46823 * 119.99949 * 15 13 11 18 18 H 1.48489 * 109.47322 * 240.00146 * 15 13 11 19 19 C 1.50705 * 109.47293 * 154.99993 * 9 8 5 20 20 C 1.38238 * 119.99996 * 29.89339 * 19 9 8 21 21 C 1.38232 * 119.99902 * 179.81170 * 20 19 9 22 22 C 1.38234 * 120.00204 * 0.39432 * 21 20 19 23 23 C 1.38240 * 119.99870 * 359.86041 * 22 21 20 24 24 C 1.38234 * 120.00030 * 210.16971 * 19 9 8 25 25 H 1.09010 * 109.46626 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.47483 * 59.99546 * 1 2 3 27 27 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00042 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47355 * 300.00155 * 7 5 3 30 30 H 1.09004 * 109.46891 * 60.00001 * 7 5 3 31 31 H 1.08993 * 109.47291 * 179.97438 * 7 5 3 32 32 H 1.00899 * 110.99877 * 81.04395 * 8 5 3 33 33 H 0.96998 * 120.00108 * 180.02562 * 14 13 11 34 34 H 1.08004 * 119.99441 * 0.02562 * 20 19 9 35 35 H 1.07997 * 119.99803 * 180.23697 * 21 20 19 36 36 H 1.07993 * 120.00197 * 179.83213 * 22 21 20 37 37 H 1.07996 * 120.00001 * 179.97438 * 23 22 21 38 38 H 1.08003 * 119.99789 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0129 0.6555 -0.8835 7 6 4.1508 0.4428 1.2558 8 7 4.1356 2.5521 0.0117 9 6 5.4853 2.6355 -0.5622 10 1 5.5828 1.9087 -1.3687 11 6 6.5049 2.3392 0.5071 12 1 7.1530 1.4804 0.4122 13 6 6.6106 3.1642 1.6067 14 7 5.7001 4.0876 1.8258 15 14 8.0468 2.9705 2.7854 16 1 8.9254 1.8682 2.3180 17 1 8.8229 4.2357 2.8320 18 1 7.5341 2.6540 4.1425 19 6 5.7155 4.0223 -1.1052 20 6 5.0802 5.1053 -0.5269 21 6 5.2944 6.3778 -1.0225 22 6 6.1375 6.5665 -2.1017 23 6 6.7686 5.4828 -2.6834 24 6 6.5574 4.2107 -2.1853 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.9499 -0.8400 -0.0004 29 1 3.7838 0.9544 2.1455 30 1 3.7874 -0.5849 1.2518 31 1 5.2407 0.4424 1.2601 32 1 4.1140 2.9396 0.9430 33 1 5.7746 4.6683 2.5991 34 1 4.4192 4.9575 0.3144 35 1 4.8011 7.2244 -0.5683 36 1 6.3027 7.5603 -2.4906 37 1 7.4270 5.6301 -3.5267 38 1 7.0506 3.3641 -2.6397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055017859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:04 Heat of formation + Delta-G solvation = -4.960058 kcal Electronic energy + Delta-G solvation = -20171.064304 eV Core-core repulsion = 17206.487159 eV Total energy + Delta-G solvation = -2964.577145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18703 -38.11653 -35.64135 -34.09526 -32.64333 -30.80281 -29.66862 -28.24631 -26.41130 -26.20756 -23.02776 -22.28004 -21.20360 -19.83449 -19.60763 -16.93555 -16.58834 -15.57412 -15.52179 -14.90332 -14.77964 -14.04686 -13.86154 -13.53263 -13.11572 -12.99190 -12.60481 -12.19040 -12.15277 -12.01705 -11.80106 -11.60452 -11.51204 -11.39854 -11.00916 -10.71401 -10.62309 -10.36237 -9.97768 -9.70557 -9.50328 -9.01731 -8.74594 -8.70503 -7.73721 -7.36946 -7.02644 -6.08539 -4.30416 2.58568 2.70622 3.18947 3.29597 3.30948 3.31182 3.64198 4.28114 5.00876 5.12879 5.21849 5.52355 5.58764 5.64102 5.85573 5.88906 5.93760 5.94835 6.01834 6.09954 6.31340 6.49150 6.56328 6.74021 6.77494 6.82865 6.94153 7.03650 7.20979 7.36126 7.59532 7.62724 7.83235 7.88523 7.97281 8.10278 8.31885 8.42332 8.79848 8.85973 9.07361 9.40282 10.78210 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.007953 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.782688 B = 3519.882922 C = 4677.786439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.748 5.748 3 C 0.513 3.487 4 O -0.521 6.521 5 C 0.082 3.918 6 H 0.085 0.915 7 C -0.170 4.170 8 N -0.666 5.666 9 C 0.240 3.760 10 H 0.036 0.964 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.077 3.923 14 N -0.869 5.869 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.021 4.021 20 C -0.048 4.048 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.133 4.133 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.397 0.603 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.373 0.627 33 H 0.267 0.733 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -6.330 -2.797 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.403 5.403 3 C 0.299 3.701 4 O -0.394 6.394 5 C -0.033 4.033 6 H 0.103 0.897 7 C -0.229 4.229 8 N -0.303 5.303 9 C 0.132 3.868 10 H 0.054 0.946 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.128 4.128 14 N -0.506 5.506 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.022 4.022 20 C -0.067 4.067 21 C -0.167 4.167 22 C -0.170 4.170 23 C -0.165 4.165 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.990 -5.192 -3.226 7.891 hybrid contribution 1.711 -0.743 1.454 2.365 sum -3.279 -5.935 -1.771 7.008 Atomic orbital electron populations 1.21399 0.80872 1.01214 1.01868 1.45955 1.06965 1.09142 1.78242 1.21363 0.91004 0.82950 0.74804 1.90647 1.70272 1.31305 1.47168 1.21230 0.89411 0.94054 0.98652 0.89722 1.22496 1.04620 0.97927 0.97835 1.60631 1.25384 1.12413 1.31852 1.18163 0.85943 0.89537 0.93132 0.94621 1.21636 1.20467 1.11591 1.04522 0.92211 1.24964 0.95724 0.94503 0.97567 1.69633 1.32772 1.20209 1.27954 0.86618 0.83051 0.78273 0.80591 1.19800 1.20762 1.21044 1.20080 0.93175 0.97288 0.91670 1.21391 0.97797 0.90405 0.97092 1.21095 1.00338 0.97660 0.97616 1.20763 1.00326 0.97368 0.98507 1.20726 1.01703 0.93298 1.00736 1.20816 1.00263 0.96096 0.98008 0.92798 0.92760 0.91459 0.77027 0.92928 0.94400 0.89179 0.80085 0.92185 0.83651 0.88150 0.88396 0.88195 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.70 59.84 0.64 1.70 16 2 N -0.75 -10.22 5.60 -67.08 -0.38 -10.60 16 3 C 0.51 9.55 7.23 -10.99 -0.08 9.47 16 4 O -0.52 -11.95 16.43 5.55 0.09 -11.86 16 5 C 0.08 1.54 3.00 -68.87 -0.21 1.34 16 6 H 0.08 1.49 7.43 -51.93 -0.39 1.10 16 7 C -0.17 -2.95 8.81 37.16 0.33 -2.62 16 8 N -0.67 -15.19 4.70 -103.40 -0.49 -15.68 16 9 C 0.24 5.61 2.51 -70.02 -0.18 5.43 16 10 H 0.04 0.80 7.37 -51.93 -0.38 0.42 16 11 C -0.54 -13.28 6.60 -34.44 -0.23 -13.50 16 12 H 0.06 1.46 7.84 -52.48 -0.41 1.05 16 13 C 0.08 1.91 5.04 -17.82 -0.09 1.82 16 14 N -0.87 -21.95 7.97 55.43 0.44 -21.51 16 15 Si 0.89 19.95 29.55 -169.99 -5.02 14.93 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.02 -0.50 4.70 -104.62 -0.49 -0.99 16 20 C -0.05 -1.16 7.56 -39.58 -0.30 -1.45 16 21 C -0.15 -3.22 10.05 -39.59 -0.40 -3.62 16 22 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 23 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 24 C -0.13 -2.90 9.70 -39.58 -0.38 -3.28 16 25 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.40 4.20 8.24 -40.82 -0.34 3.86 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.04 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.09 1.73 6.19 -51.93 -0.32 1.41 16 32 H 0.37 9.27 5.51 -39.29 -0.22 9.06 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.15 3.73 5.59 -52.48 -0.29 3.44 16 35 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -28.64 310.37 -8.11 -36.75 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -5.26 Total: 15.76 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.18 Total: -12.47 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.42 Total: -47.79 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.64 -8.11 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds