Wall clock time and date at job start Mon Mar 30 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00464 * 2 1 4 4 O 1.21285 * 119.99914 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00364 * 179.72542 * 3 2 1 6 6 H 1.09003 * 109.46955 * 60.27782 * 5 3 2 7 7 C 1.53000 * 109.47422 * 300.27797 * 5 3 2 8 8 N 1.46898 * 109.47447 * 180.27662 * 5 3 2 9 9 C 1.46896 * 111.00208 * 205.00391 * 8 5 3 10 10 H 1.09002 * 109.47534 * 34.99806 * 9 8 5 11 11 C 1.50697 * 109.47066 * 274.99648 * 9 8 5 12 12 H 1.08005 * 120.00026 * 117.24771 * 11 9 8 13 13 C 1.37877 * 120.00613 * 297.25239 * 11 9 8 14 14 N 1.31515 * 119.99539 * 10.12104 * 13 11 9 15 15 Si 1.86798 * 120.00722 * 190.11599 * 13 11 9 16 16 H 1.48506 * 109.46544 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46823 * 119.99949 * 15 13 11 18 18 H 1.48489 * 109.47322 * 240.00146 * 15 13 11 19 19 C 1.50705 * 109.47293 * 154.99993 * 9 8 5 20 20 C 1.38238 * 119.99996 * 29.89339 * 19 9 8 21 21 C 1.38232 * 119.99902 * 179.81170 * 20 19 9 22 22 C 1.38234 * 120.00204 * 0.39432 * 21 20 19 23 23 C 1.38240 * 119.99870 * 359.86041 * 22 21 20 24 24 C 1.38234 * 120.00030 * 210.16971 * 19 9 8 25 25 H 1.09010 * 109.46626 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.47483 * 59.99546 * 1 2 3 27 27 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00042 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47355 * 300.00155 * 7 5 3 30 30 H 1.09004 * 109.46891 * 60.00001 * 7 5 3 31 31 H 1.08993 * 109.47291 * 179.97438 * 7 5 3 32 32 H 1.00899 * 110.99877 * 81.04395 * 8 5 3 33 33 H 0.96998 * 120.00108 * 180.02562 * 14 13 11 34 34 H 1.08004 * 119.99441 * 0.02562 * 20 19 9 35 35 H 1.07997 * 119.99803 * 180.23697 * 21 20 19 36 36 H 1.07993 * 120.00197 * 179.83213 * 22 21 20 37 37 H 1.07996 * 120.00001 * 179.97438 * 23 22 21 38 38 H 1.08003 * 119.99789 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 0.0005 5 6 3.6459 1.1671 0.0063 6 1 4.0129 0.6555 -0.8835 7 6 4.1508 0.4428 1.2558 8 7 4.1356 2.5521 0.0117 9 6 5.4853 2.6355 -0.5622 10 1 5.5828 1.9087 -1.3687 11 6 6.5049 2.3392 0.5071 12 1 7.1530 1.4804 0.4122 13 6 6.6106 3.1642 1.6067 14 7 5.7001 4.0876 1.8258 15 14 8.0468 2.9705 2.7854 16 1 8.9254 1.8682 2.3180 17 1 8.8229 4.2357 2.8320 18 1 7.5341 2.6540 4.1425 19 6 5.7155 4.0223 -1.1052 20 6 5.0802 5.1053 -0.5269 21 6 5.2944 6.3778 -1.0225 22 6 6.1375 6.5665 -2.1017 23 6 6.7686 5.4828 -2.6834 24 6 6.5574 4.2107 -2.1853 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.9499 -0.8400 -0.0004 29 1 3.7838 0.9544 2.1455 30 1 3.7874 -0.5849 1.2518 31 1 5.2407 0.4424 1.2601 32 1 4.1140 2.9396 0.9430 33 1 5.7746 4.6683 2.5991 34 1 4.4192 4.9575 0.3144 35 1 4.8011 7.2244 -0.5683 36 1 6.3027 7.5603 -2.4906 37 1 7.4270 5.6301 -3.5267 38 1 7.0506 3.3641 -2.6397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055017859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:03 Heat of formation + Delta-G solvation = -23.612501 kcal Electronic energy + Delta-G solvation = -20171.873134 eV Core-core repulsion = 17206.487159 eV Total energy + Delta-G solvation = -2965.385975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67461 -39.76599 -37.29076 -35.43916 -34.36871 -32.51085 -31.33069 -29.82692 -28.01187 -27.58688 -24.65487 -23.86396 -22.84114 -21.53503 -21.02070 -18.53321 -18.29097 -17.13255 -16.98645 -16.60857 -16.20959 -15.58925 -15.50543 -15.16770 -14.65159 -14.54279 -14.03083 -13.80067 -13.61624 -13.47629 -13.27507 -13.21200 -13.00025 -12.98998 -12.77023 -12.46350 -12.20371 -12.06938 -11.72271 -11.41664 -11.25752 -10.67269 -10.47469 -9.98614 -9.41327 -9.08202 -8.75666 -7.93046 -6.21482 0.89903 1.04626 1.38064 1.44943 1.50937 1.84522 2.40918 2.42105 3.15745 3.40915 3.95386 4.10362 4.32991 4.40040 4.40312 4.46220 4.53844 4.59751 4.67752 4.81172 4.90703 4.95417 4.98304 5.07595 5.18542 5.25106 5.53401 5.55947 5.60207 5.69676 5.72458 5.93280 6.11402 6.12002 6.35807 6.56822 6.60595 6.74688 7.03544 7.19927 7.48378 7.51294 8.88696 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.007953 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.782688 B = 3519.882922 C = 4677.786439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.512 3.488 4 O -0.573 6.573 5 C 0.076 3.924 6 H 0.099 0.901 7 C -0.157 4.157 8 N -0.679 5.679 9 C 0.241 3.759 10 H 0.037 0.963 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.043 3.957 14 N -0.881 5.881 15 Si 0.935 3.065 16 H -0.270 1.270 17 H -0.292 1.292 18 H -0.284 1.284 19 C -0.048 4.048 20 C -0.071 4.071 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.147 4.147 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.114 0.886 28 H 0.415 0.585 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.359 0.641 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 -7.374 -3.773 9.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.381 5.381 3 C 0.298 3.702 4 O -0.451 6.451 5 C -0.039 4.039 6 H 0.117 0.883 7 C -0.216 4.216 8 N -0.314 5.314 9 C 0.133 3.867 10 H 0.055 0.945 11 C -0.584 4.584 12 H 0.073 0.927 13 C -0.160 4.160 14 N -0.518 5.518 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.218 1.218 18 H -0.210 1.210 19 C -0.049 4.049 20 C -0.090 4.090 21 C -0.179 4.179 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.252 0.748 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.578 -6.314 -4.214 8.865 hybrid contribution 1.535 -0.458 1.699 2.335 sum -3.043 -6.772 -2.515 7.839 Atomic orbital electron populations 1.21610 0.79138 1.04013 1.00919 1.45755 1.08074 1.08398 1.75921 1.21286 0.90865 0.83556 0.74464 1.90626 1.71018 1.33427 1.50041 1.21364 0.89998 0.92598 0.99926 0.88319 1.22320 1.03244 0.99963 0.96041 1.60584 1.25104 1.14862 1.30858 1.18134 0.86055 0.89696 0.92814 0.94534 1.21725 1.20473 1.11314 1.04913 0.92682 1.25445 0.97166 0.94638 0.98742 1.69788 1.33484 1.20584 1.27962 0.85869 0.80991 0.77563 0.79289 1.19437 1.21812 1.20964 1.20279 0.94328 0.97336 0.92937 1.21251 0.98578 0.91839 0.97299 1.21342 1.00956 0.97198 0.98400 1.21159 0.98935 0.99197 0.97392 1.21154 1.01329 0.92393 1.01175 1.21090 1.00054 0.97688 0.97687 0.93895 0.93663 0.86719 0.74826 0.94980 0.90079 0.91010 0.81732 0.92734 0.86281 0.86762 0.84857 0.84566 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 10.70 127.77 1.37 3.21 16 2 N -0.73 -18.42 5.60 -484.52 -2.71 -21.13 16 3 C 0.51 18.97 7.23 87.65 0.63 19.61 16 4 O -0.57 -27.02 16.43 -3.05 -0.05 -27.07 16 5 C 0.08 2.86 3.00 44.17 0.13 2.99 16 6 H 0.10 3.40 7.43 -2.39 -0.02 3.38 16 7 C -0.16 -5.35 8.81 71.98 0.63 -4.72 16 8 N -0.68 -31.91 4.70 -481.05 -2.26 -34.17 16 9 C 0.24 11.47 2.51 43.42 0.11 11.57 16 10 H 0.04 1.66 7.37 -2.39 -0.02 1.65 16 11 C -0.55 -26.96 6.60 25.60 0.17 -26.79 16 12 H 0.05 2.71 7.84 -2.91 -0.02 2.68 16 13 C 0.04 2.15 5.04 84.65 0.43 2.58 16 14 N -0.88 -45.92 7.97 21.45 0.17 -45.75 16 15 Si 0.94 41.36 29.55 68.60 2.03 43.39 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.05 -2.30 4.70 -19.86 -0.09 -2.39 16 20 C -0.07 -3.48 7.56 22.27 0.17 -3.31 16 21 C -0.16 -6.91 10.05 22.27 0.22 -6.68 16 22 C -0.15 -5.61 10.05 22.27 0.22 -5.38 16 23 C -0.14 -5.34 10.05 22.27 0.22 -5.11 16 24 C -0.15 -6.24 9.70 22.27 0.22 -6.02 16 25 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.42 7.43 8.24 -92.71 -0.76 6.67 16 29 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.08 2.00 7.56 -2.38 -0.02 1.98 16 31 H 0.07 2.74 6.19 -2.39 -0.01 2.72 16 32 H 0.36 18.64 5.51 -89.69 -0.49 18.14 16 33 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.12 6.44 5.59 -2.91 -0.02 6.42 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 38 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -63.99 310.37 1.42 -62.57 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.19 Total: 42.61 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 4.43 Total: -20.44 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.80 Total: -101.06 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -63.99 1.42 -62.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds