Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47290 * 2 1 4 4 C 1.50697 * 109.47251 * 239.99693 * 2 1 3 5 5 H 1.07996 * 120.00612 * 275.00865 * 4 2 1 6 6 C 1.37883 * 119.99980 * 95.00445 * 4 2 1 7 7 N 1.31509 * 120.00322 * 184.91824 * 6 4 2 8 8 Si 1.86801 * 119.99600 * 4.91397 * 6 4 2 9 9 H 1.48500 * 109.47112 * 84.83773 * 8 6 4 10 10 H 1.48498 * 109.47103 * 204.83110 * 8 6 4 11 11 H 1.48495 * 109.47579 * 324.83584 * 8 6 4 12 12 N 1.46502 * 109.47024 * 120.00283 * 2 1 3 13 13 C 1.34779 * 119.99871 * 274.99598 * 12 2 1 14 14 O 1.21283 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00121 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.46555 * 60.00868 * 15 13 12 17 17 C 1.52992 * 109.47740 * 300.00675 * 15 13 12 18 18 N 1.46898 * 109.47199 * 64.99459 * 17 15 13 19 19 C 1.50699 * 109.47269 * 180.02562 * 15 13 12 20 20 C 1.38239 * 120.00244 * 240.00877 * 19 15 13 21 21 C 1.38234 * 119.99649 * 180.02562 * 20 19 15 22 22 C 1.38233 * 120.00499 * 359.94746 * 21 20 19 23 23 C 1.38237 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99874 * 59.98413 * 19 15 13 25 25 H 1.08997 * 109.46852 * 295.03595 * 1 2 3 26 26 H 1.08992 * 109.46831 * 55.03745 * 1 2 3 27 27 H 1.08999 * 109.47264 * 175.03455 * 1 2 3 28 28 H 0.97002 * 120.00353 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00565 * 94.99887 * 12 2 1 30 30 H 1.08998 * 109.47763 * 184.99496 * 17 15 13 31 31 H 1.08998 * 109.47066 * 304.99787 * 17 15 13 32 32 H 1.00901 * 111.00147 * 56.04719 * 18 17 15 33 33 H 1.00898 * 111.00689 * 180.02562 * 18 17 15 34 34 H 1.08001 * 119.99798 * 359.97173 * 20 19 15 35 35 H 1.08007 * 119.99634 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.99995 * 179.72860 * 22 21 20 37 37 H 1.08001 * 119.99820 * 179.97438 * 23 22 21 38 38 H 1.08007 * 119.99900 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1354 -1.7855 -1.2291 6 6 2.3604 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3173 9 1 3.5992 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6488 -0.7289 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7044 -1.8824 3.9315 18 7 1.7463 -2.8856 2.8592 19 6 2.6991 0.2393 4.7415 20 6 3.9004 0.4986 5.3745 21 6 3.9463 1.3863 6.4331 22 6 2.7913 2.0156 6.8581 23 6 1.5903 1.7576 6.2241 24 6 1.5440 0.8686 5.1665 25 1 -0.3633 0.4349 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0238 -0.0889 28 1 2.9372 -0.1049 -4.2554 29 1 2.2490 -1.6318 1.1527 30 1 2.0167 -2.3405 4.8699 31 1 0.6882 -1.5019 4.0334 32 1 2.6896 -3.2070 2.7013 33 1 1.1301 -3.6583 3.0625 34 1 4.8029 0.0069 5.0424 35 1 4.8848 1.5885 6.9279 36 1 2.8264 2.7058 7.6880 37 1 0.6877 2.2490 6.5564 38 1 0.6056 0.6666 4.6714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061613292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -19.037770 kcal Electronic energy + Delta-G solvation = -19812.063222 eV Core-core repulsion = 16846.875622 eV Total energy + Delta-G solvation = -2965.187600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93664 -38.26462 -35.37238 -34.72073 -32.19953 -31.82343 -30.79260 -29.65698 -27.54476 -25.19840 -23.39911 -22.43191 -22.00434 -20.17870 -19.26561 -17.36256 -16.96804 -16.07231 -15.73749 -15.38365 -14.89880 -14.69201 -14.47486 -14.08057 -13.64179 -13.25445 -13.00637 -12.80138 -12.72386 -12.40610 -12.27425 -12.09328 -11.59176 -11.21275 -11.05065 -10.94279 -10.78985 -10.69708 -10.44227 -9.80142 -9.10346 -9.06719 -8.77769 -8.69555 -8.63813 -8.52630 -7.81282 -6.15558 -4.17484 1.43509 1.53191 3.31919 3.39279 3.44875 3.48130 3.82228 4.21672 4.40008 4.44057 4.89696 4.95386 5.06346 5.11519 5.18351 5.24096 5.26792 5.42805 5.60533 5.62934 5.83745 5.92224 6.09071 6.15252 6.47895 6.53017 6.59803 6.66178 6.74365 6.81585 7.01461 7.06157 7.10545 7.34074 7.37662 7.54406 7.74833 8.29550 8.81586 8.88238 9.25689 9.48808 10.96442 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.005593 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.214625 B = 5004.702808 C = 5509.353378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.230 3.770 3 H 0.045 0.955 4 C -0.524 4.524 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.685 5.685 13 C 0.509 3.491 14 O -0.562 6.562 15 C -0.075 4.075 16 H 0.097 0.903 17 C 0.078 3.922 18 N -0.846 5.846 19 C -0.057 4.057 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.081 4.081 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.343 0.657 33 H 0.347 0.653 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -2.036 19.164 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.127 3.873 3 H 0.063 0.937 4 C -0.562 4.562 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.335 5.335 13 C 0.293 3.707 14 O -0.443 6.443 15 C -0.097 4.097 16 H 0.115 0.885 17 C -0.053 4.053 18 N -0.378 5.378 19 C -0.058 4.058 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.099 4.099 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.241 0.759 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.261 -0.629 18.479 18.491 hybrid contribution 0.553 -0.063 0.508 0.754 sum 0.293 -0.692 18.987 19.002 Atomic orbital electron populations 1.22171 0.98811 1.00433 0.98819 1.19079 0.90871 0.94131 0.83199 0.93672 1.21041 1.44618 0.95651 0.94908 0.90329 1.24933 0.93820 0.98442 0.95208 1.69885 1.45335 1.36030 1.01679 0.86910 0.79754 0.86149 0.77148 1.20006 1.21329 1.18530 1.46627 1.63614 1.14497 1.08775 1.20052 0.78947 0.87115 0.84596 1.90650 1.52276 1.16169 1.85171 1.20438 1.01178 0.95077 0.92983 0.88511 1.21679 0.99793 0.91707 0.92128 1.58552 1.14406 1.18451 1.46345 1.19300 0.93737 0.97605 0.95189 1.21006 0.96975 0.98816 0.96388 1.21023 0.98164 0.97621 0.97606 1.21084 0.92976 1.00042 1.00184 1.21099 0.97901 0.98550 0.96643 1.20943 0.98229 0.95517 0.95179 0.95465 0.93361 0.93384 0.92400 0.75928 0.94602 0.90414 0.84434 0.83890 0.86297 0.86358 0.86499 0.86325 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.47 37.16 0.35 -2.94 16 2 C 0.23 5.70 2.22 -69.08 -0.15 5.55 16 3 H 0.05 1.23 4.73 -51.93 -0.25 0.98 16 4 C -0.52 -14.45 9.05 -34.44 -0.31 -14.76 16 5 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 8 Si 0.87 22.26 26.99 -169.99 -4.59 17.67 16 9 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.60 6.82 56.52 0.39 -6.22 16 12 N -0.69 -14.35 4.78 -54.93 -0.26 -14.61 16 13 C 0.51 10.11 6.99 -10.98 -0.08 10.04 16 14 O -0.56 -13.27 14.77 5.56 0.08 -13.19 16 15 C -0.07 -1.08 2.58 -92.93 -0.24 -1.32 16 16 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16 17 C 0.08 0.91 5.90 -3.83 -0.02 0.89 16 18 N -0.85 -9.23 7.24 -10.37 -0.08 -9.30 16 19 C -0.06 -0.83 4.40 -104.62 -0.46 -1.29 16 20 C -0.11 -1.47 9.67 -39.58 -0.38 -1.86 16 21 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.08 -1.18 7.98 -39.58 -0.32 -1.49 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.40 7.67 6.48 -40.82 -0.26 7.40 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16 32 H 0.34 3.26 8.96 -39.29 -0.35 2.91 16 33 H 0.35 3.05 9.08 -39.29 -0.36 2.70 16 34 H 0.12 1.31 7.95 -52.49 -0.42 0.90 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.80 7.58 -52.48 -0.40 1.40 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -33.05 315.97 -7.58 -40.63 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.37 Total: 10.71 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.90 Total: -10.74 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.44 Total: -49.84 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.59 Total: 17.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.05 -7.58 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061613292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.588 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds