Wall clock time and date at job start Mon Mar 30 2020 04:52:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47290 * 2 1
4 4 C 1.50697 * 109.47251 * 239.99693 * 2 1 3
5 5 H 1.07996 * 120.00612 * 275.00865 * 4 2 1
6 6 C 1.37883 * 119.99980 * 95.00445 * 4 2 1
7 7 N 1.31509 * 120.00322 * 184.91824 * 6 4 2
8 8 Si 1.86801 * 119.99600 * 4.91397 * 6 4 2
9 9 H 1.48500 * 109.47112 * 84.83773 * 8 6 4
10 10 H 1.48498 * 109.47103 * 204.83110 * 8 6 4
11 11 H 1.48495 * 109.47579 * 324.83584 * 8 6 4
12 12 N 1.46502 * 109.47024 * 120.00283 * 2 1 3
13 13 C 1.34779 * 119.99871 * 274.99598 * 12 2 1
14 14 O 1.21283 * 119.99723 * 0.02562 * 13 12 2
15 15 C 1.50699 * 120.00121 * 179.97438 * 13 12 2
16 16 H 1.09001 * 109.46555 * 60.00868 * 15 13 12
17 17 C 1.52992 * 109.47740 * 300.00675 * 15 13 12
18 18 N 1.46898 * 109.47199 * 64.99459 * 17 15 13
19 19 C 1.50699 * 109.47269 * 180.02562 * 15 13 12
20 20 C 1.38239 * 120.00244 * 240.00877 * 19 15 13
21 21 C 1.38234 * 119.99649 * 180.02562 * 20 19 15
22 22 C 1.38233 * 120.00499 * 359.94746 * 21 20 19
23 23 C 1.38237 * 119.99865 * 359.97438 * 22 21 20
24 24 C 1.38234 * 119.99874 * 59.98413 * 19 15 13
25 25 H 1.08997 * 109.46852 * 295.03595 * 1 2 3
26 26 H 1.08992 * 109.46831 * 55.03745 * 1 2 3
27 27 H 1.08999 * 109.47264 * 175.03455 * 1 2 3
28 28 H 0.97002 * 120.00353 * 180.02562 * 7 6 4
29 29 H 0.97000 * 120.00565 * 94.99887 * 12 2 1
30 30 H 1.08998 * 109.47763 * 184.99496 * 17 15 13
31 31 H 1.08998 * 109.47066 * 304.99787 * 17 15 13
32 32 H 1.00901 * 111.00147 * 56.04719 * 18 17 15
33 33 H 1.00898 * 111.00689 * 180.02562 * 18 17 15
34 34 H 1.08001 * 119.99798 * 359.97173 * 20 19 15
35 35 H 1.08007 * 119.99634 * 179.97438 * 21 20 19
36 36 H 1.08003 * 119.99995 * 179.72860 * 22 21 20
37 37 H 1.08001 * 119.99820 * 179.97438 * 23 22 21
38 38 H 1.08007 * 119.99900 * 359.97438 * 24 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.1354 -1.7855 -1.2291
6 6 2.3604 0.0120 -2.3580
7 7 2.7060 -0.6132 -3.4622
8 14 2.3137 1.8790 -2.3173
9 1 3.5992 2.3948 -1.7821
10 1 2.1060 2.3991 -3.6927
11 1 1.1988 2.3275 -1.4450
12 7 2.0183 -0.6907 1.1962
13 6 2.1471 -0.0183 2.3572
14 8 1.8583 1.1583 2.4117
15 6 2.6488 -0.7289 3.5878
16 1 3.6480 -1.1213 3.3986
17 6 1.7044 -1.8824 3.9315
18 7 1.7463 -2.8856 2.8592
19 6 2.6991 0.2393 4.7415
20 6 3.9004 0.4986 5.3745
21 6 3.9463 1.3863 6.4331
22 6 2.7913 2.0156 6.8581
23 6 1.5903 1.7576 6.2241
24 6 1.5440 0.8686 5.1665
25 1 -0.3633 0.4349 0.9311
26 1 -0.3633 0.5889 -0.8422
27 1 -0.3634 -1.0238 -0.0889
28 1 2.9372 -0.1049 -4.2554
29 1 2.2490 -1.6318 1.1527
30 1 2.0167 -2.3405 4.8699
31 1 0.6882 -1.5019 4.0334
32 1 2.6896 -3.2070 2.7013
33 1 1.1301 -3.6583 3.0625
34 1 4.8029 0.0069 5.0424
35 1 4.8848 1.5885 6.9279
36 1 2.8264 2.7058 7.6880
37 1 0.6877 2.2490 6.5564
38 1 0.6056 0.6666 4.6714
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000061613292.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:32
Heat of formation + Delta-G solvation = -19.037770 kcal
Electronic energy + Delta-G solvation = -19812.063222 eV
Core-core repulsion = 16846.875622 eV
Total energy + Delta-G solvation = -2965.187600 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.93664 -38.26462 -35.37238 -34.72073 -32.19953 -31.82343 -30.79260 -29.65698
-27.54476 -25.19840 -23.39911 -22.43191 -22.00434 -20.17870 -19.26561 -17.36256
-16.96804 -16.07231 -15.73749 -15.38365 -14.89880 -14.69201 -14.47486 -14.08057
-13.64179 -13.25445 -13.00637 -12.80138 -12.72386 -12.40610 -12.27425 -12.09328
-11.59176 -11.21275 -11.05065 -10.94279 -10.78985 -10.69708 -10.44227 -9.80142
-9.10346 -9.06719 -8.77769 -8.69555 -8.63813 -8.52630 -7.81282 -6.15558
-4.17484 1.43509 1.53191 3.31919 3.39279 3.44875 3.48130 3.82228
4.21672 4.40008 4.44057 4.89696 4.95386 5.06346 5.11519 5.18351
5.24096 5.26792 5.42805 5.60533 5.62934 5.83745 5.92224 6.09071
6.15252 6.47895 6.53017 6.59803 6.66178 6.74365 6.81585 7.01461
7.06157 7.10545 7.34074 7.37662 7.54406 7.74833 8.29550 8.81586
8.88238 9.25689 9.48808 10.96442
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.024594 B = 0.005593 C = 0.005081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.214625 B = 5004.702808 C = 5509.353378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.230 3.770
3 H 0.045 0.955
4 C -0.524 4.524
5 H 0.079 0.921
6 C 0.080 3.920
7 N -0.892 5.892
8 Si 0.873 3.127
9 H -0.274 1.274
10 H -0.287 1.287
11 H -0.261 1.261
12 N -0.685 5.685
13 C 0.509 3.491
14 O -0.562 6.562
15 C -0.075 4.075
16 H 0.097 0.903
17 C 0.078 3.922
18 N -0.846 5.846
19 C -0.057 4.057
20 C -0.114 4.114
21 C -0.126 4.126
22 C -0.125 4.125
23 C -0.124 4.124
24 C -0.081 4.081
25 H 0.026 0.974
26 H 0.047 0.953
27 H 0.047 0.953
28 H 0.266 0.734
29 H 0.403 0.597
30 H 0.036 0.964
31 H 0.077 0.923
32 H 0.343 0.657
33 H 0.347 0.653
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.117 0.883
37 H 0.119 0.881
38 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.179 -2.036 19.164 19.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.127 3.873
3 H 0.063 0.937
4 C -0.562 4.562
5 H 0.097 0.903
6 C -0.124 4.124
7 N -0.529 5.529
8 Si 0.700 3.300
9 H -0.200 1.200
10 H -0.213 1.213
11 H -0.185 1.185
12 N -0.335 5.335
13 C 0.293 3.707
14 O -0.443 6.443
15 C -0.097 4.097
16 H 0.115 0.885
17 C -0.053 4.053
18 N -0.378 5.378
19 C -0.058 4.058
20 C -0.132 4.132
21 C -0.144 4.144
22 C -0.143 4.143
23 C -0.142 4.142
24 C -0.099 4.099
25 H 0.045 0.955
26 H 0.066 0.934
27 H 0.066 0.934
28 H 0.076 0.924
29 H 0.241 0.759
30 H 0.054 0.946
31 H 0.096 0.904
32 H 0.156 0.844
33 H 0.161 0.839
34 H 0.137 0.863
35 H 0.136 0.864
36 H 0.135 0.865
37 H 0.137 0.863
38 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -0.261 -0.629 18.479 18.491
hybrid contribution 0.553 -0.063 0.508 0.754
sum 0.293 -0.692 18.987 19.002
Atomic orbital electron populations
1.22171 0.98811 1.00433 0.98819 1.19079 0.90871 0.94131 0.83199
0.93672 1.21041 1.44618 0.95651 0.94908 0.90329 1.24933 0.93820
0.98442 0.95208 1.69885 1.45335 1.36030 1.01679 0.86910 0.79754
0.86149 0.77148 1.20006 1.21329 1.18530 1.46627 1.63614 1.14497
1.08775 1.20052 0.78947 0.87115 0.84596 1.90650 1.52276 1.16169
1.85171 1.20438 1.01178 0.95077 0.92983 0.88511 1.21679 0.99793
0.91707 0.92128 1.58552 1.14406 1.18451 1.46345 1.19300 0.93737
0.97605 0.95189 1.21006 0.96975 0.98816 0.96388 1.21023 0.98164
0.97621 0.97606 1.21084 0.92976 1.00042 1.00184 1.21099 0.97901
0.98550 0.96643 1.20943 0.98229 0.95517 0.95179 0.95465 0.93361
0.93384 0.92400 0.75928 0.94602 0.90414 0.84434 0.83890 0.86297
0.86358 0.86499 0.86325 0.86235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.30 9.47 37.16 0.35 -2.94 16
2 C 0.23 5.70 2.22 -69.08 -0.15 5.55 16
3 H 0.05 1.23 4.73 -51.93 -0.25 0.98 16
4 C -0.52 -14.45 9.05 -34.44 -0.31 -14.76 16
5 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16
6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16
7 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16
8 Si 0.87 22.26 26.99 -169.99 -4.59 17.67 16
9 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16
10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
11 H -0.26 -6.60 6.82 56.52 0.39 -6.22 16
12 N -0.69 -14.35 4.78 -54.93 -0.26 -14.61 16
13 C 0.51 10.11 6.99 -10.98 -0.08 10.04 16
14 O -0.56 -13.27 14.77 5.56 0.08 -13.19 16
15 C -0.07 -1.08 2.58 -92.93 -0.24 -1.32 16
16 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16
17 C 0.08 0.91 5.90 -3.83 -0.02 0.89 16
18 N -0.85 -9.23 7.24 -10.37 -0.08 -9.30 16
19 C -0.06 -0.83 4.40 -104.62 -0.46 -1.29 16
20 C -0.11 -1.47 9.67 -39.58 -0.38 -1.86 16
21 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16
22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16
23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16
24 C -0.08 -1.18 7.98 -39.58 -0.32 -1.49 16
25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
29 H 0.40 7.67 6.48 -40.82 -0.26 7.40 16
30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16
32 H 0.34 3.26 8.96 -39.29 -0.35 2.91 16
33 H 0.35 3.05 9.08 -39.29 -0.36 2.70 16
34 H 0.12 1.31 7.95 -52.49 -0.42 0.90 16
35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16
36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16
37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16
38 H 0.12 1.80 7.58 -52.48 -0.40 1.40 16
LS Contribution 315.97 15.07 4.76 4.76
Total: -1.00 -33.05 315.97 -7.58 -40.63
By element:
Atomic # 1 Polarization: 16.08 SS G_CDS: -5.37 Total: 10.71 kcal
Atomic # 6 Polarization: -7.84 SS G_CDS: -2.90 Total: -10.74 kcal
Atomic # 7 Polarization: -50.28 SS G_CDS: 0.44 Total: -49.84 kcal
Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -4.59 Total: 17.67 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -33.05 -7.58 -40.63 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000061613292.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.588 kcal
(2) G-P(sol) polarization free energy of solvation -33.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds