Wall clock time and date at job start Mon Mar 30 2020 04:52:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47290 * 2 1
4 4 C 1.50697 * 109.47251 * 239.99693 * 2 1 3
5 5 H 1.07996 * 120.00612 * 275.00865 * 4 2 1
6 6 C 1.37883 * 119.99980 * 95.00445 * 4 2 1
7 7 N 1.31509 * 120.00322 * 184.91824 * 6 4 2
8 8 Si 1.86801 * 119.99600 * 4.91397 * 6 4 2
9 9 H 1.48500 * 109.47112 * 84.83773 * 8 6 4
10 10 H 1.48498 * 109.47103 * 204.83110 * 8 6 4
11 11 H 1.48495 * 109.47579 * 324.83584 * 8 6 4
12 12 N 1.46502 * 109.47024 * 120.00283 * 2 1 3
13 13 C 1.34779 * 119.99871 * 274.99598 * 12 2 1
14 14 O 1.21283 * 119.99723 * 0.02562 * 13 12 2
15 15 C 1.50699 * 120.00121 * 179.97438 * 13 12 2
16 16 H 1.09001 * 109.46555 * 60.00868 * 15 13 12
17 17 C 1.52992 * 109.47740 * 300.00675 * 15 13 12
18 18 N 1.46898 * 109.47199 * 64.99459 * 17 15 13
19 19 C 1.50699 * 109.47269 * 180.02562 * 15 13 12
20 20 C 1.38239 * 120.00244 * 240.00877 * 19 15 13
21 21 C 1.38234 * 119.99649 * 180.02562 * 20 19 15
22 22 C 1.38233 * 120.00499 * 359.94746 * 21 20 19
23 23 C 1.38237 * 119.99865 * 359.97438 * 22 21 20
24 24 C 1.38234 * 119.99874 * 59.98413 * 19 15 13
25 25 H 1.08997 * 109.46852 * 295.03595 * 1 2 3
26 26 H 1.08992 * 109.46831 * 55.03745 * 1 2 3
27 27 H 1.08999 * 109.47264 * 175.03455 * 1 2 3
28 28 H 0.97002 * 120.00353 * 180.02562 * 7 6 4
29 29 H 0.97000 * 120.00565 * 94.99887 * 12 2 1
30 30 H 1.08998 * 109.47763 * 184.99496 * 17 15 13
31 31 H 1.08998 * 109.47066 * 304.99787 * 17 15 13
32 32 H 1.00901 * 111.00147 * 56.04719 * 18 17 15
33 33 H 1.00898 * 111.00689 * 180.02562 * 18 17 15
34 34 H 1.08001 * 119.99798 * 359.97173 * 20 19 15
35 35 H 1.08007 * 119.99634 * 179.97438 * 21 20 19
36 36 H 1.08003 * 119.99995 * 179.72860 * 22 21 20
37 37 H 1.08001 * 119.99820 * 179.97438 * 23 22 21
38 38 H 1.08007 * 119.99900 * 359.97438 * 24 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.1354 -1.7855 -1.2291
6 6 2.3604 0.0120 -2.3580
7 7 2.7060 -0.6132 -3.4622
8 14 2.3137 1.8790 -2.3173
9 1 3.5992 2.3948 -1.7821
10 1 2.1060 2.3991 -3.6927
11 1 1.1988 2.3275 -1.4450
12 7 2.0183 -0.6907 1.1962
13 6 2.1471 -0.0183 2.3572
14 8 1.8583 1.1583 2.4117
15 6 2.6488 -0.7289 3.5878
16 1 3.6480 -1.1213 3.3986
17 6 1.7044 -1.8824 3.9315
18 7 1.7463 -2.8856 2.8592
19 6 2.6991 0.2393 4.7415
20 6 3.9004 0.4986 5.3745
21 6 3.9463 1.3863 6.4331
22 6 2.7913 2.0156 6.8581
23 6 1.5903 1.7576 6.2241
24 6 1.5440 0.8686 5.1665
25 1 -0.3633 0.4349 0.9311
26 1 -0.3633 0.5889 -0.8422
27 1 -0.3634 -1.0238 -0.0889
28 1 2.9372 -0.1049 -4.2554
29 1 2.2490 -1.6318 1.1527
30 1 2.0167 -2.3405 4.8699
31 1 0.6882 -1.5019 4.0334
32 1 2.6896 -3.2070 2.7013
33 1 1.1301 -3.6583 3.0625
34 1 4.8029 0.0069 5.0424
35 1 4.8848 1.5885 6.9279
36 1 2.8264 2.7058 7.6880
37 1 0.6877 2.2490 6.5564
38 1 0.6056 0.6666 4.6714
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000061613292.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:32
Heat of formation + Delta-G solvation = -42.506894 kcal
Electronic energy + Delta-G solvation = -19813.080920 eV
Core-core repulsion = 16846.875622 eV
Total energy + Delta-G solvation = -2966.205298 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.22244 -39.54325 -36.65709 -36.41200 -34.25301 -32.83826 -31.74213 -31.44386
-28.65129 -27.29455 -24.47718 -23.58436 -23.18861 -21.73378 -20.91452 -19.18558
-17.99249 -17.72106 -17.07571 -16.57419 -16.21275 -16.18460 -15.54428 -15.41520
-15.13632 -14.58869 -14.42794 -14.26780 -14.09241 -13.97047 -13.67949 -13.28370
-13.16266 -13.01274 -12.76889 -12.45249 -12.39441 -11.90238 -11.87284 -11.77879
-11.19617 -10.83068 -10.59675 -9.74768 -9.64259 -9.59401 -9.53751 -8.36875
-6.41274 0.45953 0.56756 1.28210 1.32335 1.43966 1.90870 2.27983
2.57501 2.94967 3.11807 3.42965 3.83418 3.99915 4.12265 4.18609
4.23751 4.31217 4.34458 4.49893 4.61430 4.68184 4.74082 4.78843
4.87887 4.94802 5.09875 5.17427 5.20037 5.43825 5.49880 5.59677
5.65488 5.74233 5.90174 6.15687 6.20823 6.21786 6.62921 6.64115
7.13055 7.24763 7.68144 8.78321
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.024594 B = 0.005593 C = 0.005081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.214625 B = 5004.702808 C = 5509.353378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.232 3.768
3 H 0.023 0.977
4 C -0.520 4.520
5 H 0.057 0.943
6 C 0.034 3.966
7 N -0.930 5.930
8 Si 0.924 3.076
9 H -0.276 1.276
10 H -0.276 1.276
11 H -0.261 1.261
12 N -0.685 5.685
13 C 0.505 3.495
14 O -0.601 6.601
15 C -0.063 4.063
16 H 0.116 0.884
17 C 0.088 3.912
18 N -0.860 5.860
19 C -0.078 4.078
20 C -0.123 4.123
21 C -0.128 4.128
22 C -0.125 4.125
23 C -0.134 4.134
24 C -0.103 4.103
25 H 0.032 0.968
26 H 0.043 0.957
27 H 0.056 0.944
28 H 0.270 0.730
29 H 0.412 0.588
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.352 0.648
33 H 0.360 0.640
34 H 0.137 0.863
35 H 0.147 0.853
36 H 0.146 0.854
37 H 0.134 0.866
38 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.791 -1.777 21.268 21.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.128 3.872
3 H 0.041 0.959
4 C -0.558 4.558
5 H 0.075 0.925
6 C -0.166 4.166
7 N -0.569 5.569
8 Si 0.750 3.250
9 H -0.202 1.202
10 H -0.201 1.201
11 H -0.185 1.185
12 N -0.336 5.336
13 C 0.292 3.708
14 O -0.484 6.484
15 C -0.085 4.085
16 H 0.133 0.867
17 C -0.043 4.043
18 N -0.394 5.394
19 C -0.079 4.079
20 C -0.141 4.141
21 C -0.146 4.146
22 C -0.143 4.143
23 C -0.152 4.152
24 C -0.121 4.121
25 H 0.051 0.949
26 H 0.062 0.938
27 H 0.075 0.925
28 H 0.079 0.921
29 H 0.252 0.748
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.166 0.834
33 H 0.176 0.824
34 H 0.154 0.846
35 H 0.165 0.835
36 H 0.163 0.837
37 H 0.152 0.848
38 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 0.351 -0.405 20.602 20.609
hybrid contribution 0.368 -0.170 -0.063 0.410
sum 0.719 -0.575 20.539 20.560
Atomic orbital electron populations
1.22050 0.97490 1.00959 0.98906 1.18836 0.91829 0.92842 0.83706
0.95898 1.21188 1.43842 0.94792 0.95999 0.92478 1.25552 0.93965
1.02016 0.95041 1.69971 1.46995 1.37525 1.02396 0.86095 0.79468
0.81923 0.77525 1.20193 1.20114 1.18521 1.46436 1.63999 1.14874
1.08301 1.20934 0.77690 0.86745 0.85452 1.90622 1.53742 1.18119
1.85903 1.20392 1.02366 0.95478 0.90226 0.86655 1.21559 0.98422
0.90983 0.93381 1.58483 1.15459 1.19071 1.46347 1.19399 0.94459
0.98369 0.95678 1.21297 0.96938 0.99178 0.96717 1.21424 0.99440
0.96646 0.97041 1.21471 0.92393 0.99950 1.00494 1.21371 0.99337
0.98230 0.96280 1.20982 0.97878 0.96927 0.96302 0.94874 0.93835
0.92498 0.92094 0.74835 0.91920 0.91705 0.83449 0.82443 0.84554
0.83535 0.83667 0.84790 0.87848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.16 9.47 71.98 0.68 -5.48 16
2 C 0.23 11.51 2.22 44.24 0.10 11.61 16
3 H 0.02 1.25 4.73 -2.39 -0.01 1.24 16
4 C -0.52 -28.90 9.05 25.60 0.23 -28.67 16
5 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16
6 C 0.03 1.98 5.47 84.66 0.46 2.44 16
7 N -0.93 -56.15 13.96 21.45 0.30 -55.86 16
8 Si 0.92 46.10 26.99 68.60 1.85 47.95 16
9 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16
10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
11 H -0.26 -12.89 6.82 99.48 0.68 -12.22 16
12 N -0.68 -28.47 4.78 -446.09 -2.13 -30.60 16
13 C 0.51 19.87 6.99 87.66 0.61 20.48 16
14 O -0.60 -28.50 14.77 -3.04 -0.04 -28.54 16
15 C -0.06 -1.74 2.58 -12.29 -0.03 -1.77 16
16 H 0.12 2.73 7.88 -2.39 -0.02 2.71 16
17 C 0.09 1.91 5.90 86.30 0.51 2.41 16
18 N -0.86 -17.35 7.24 -186.74 -1.35 -18.70 16
19 C -0.08 -2.17 4.40 -19.87 -0.09 -2.25 16
20 C -0.12 -2.91 9.67 22.27 0.22 -2.69 16
21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16
22 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16
23 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16
24 C -0.10 -2.95 7.98 22.27 0.18 -2.77 16
25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16
26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16
27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16
28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
29 H 0.41 15.43 6.48 -92.71 -0.60 14.83 16
30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
31 H 0.06 1.59 7.57 -2.39 -0.02 1.57 16
32 H 0.35 6.02 8.96 -89.69 -0.80 5.21 16
33 H 0.36 5.70 9.08 -89.70 -0.81 4.89 16
34 H 0.14 2.62 7.95 -2.91 -0.02 2.60 16
35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16
36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16
37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16
38 H 0.10 3.19 7.58 -2.91 -0.02 3.17 16
Total: -1.00 -71.14 315.97 1.00 -70.14
By element:
Atomic # 1 Polarization: 31.24 SS G_CDS: -1.16 Total: 30.08 kcal
Atomic # 6 Polarization: -18.01 SS G_CDS: 3.54 Total: -14.46 kcal
Atomic # 7 Polarization: -101.97 SS G_CDS: -3.19 Total: -105.16 kcal
Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal
Atomic # 14 Polarization: 46.10 SS G_CDS: 1.85 Total: 47.95 kcal
Total: -71.14 1.00 -70.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000061613292.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.635 kcal
(2) G-P(sol) polarization free energy of solvation -71.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.505 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds