Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47290 * 2 1 4 4 C 1.50697 * 109.47251 * 239.99693 * 2 1 3 5 5 H 1.07996 * 120.00612 * 275.00865 * 4 2 1 6 6 C 1.37883 * 119.99980 * 95.00445 * 4 2 1 7 7 N 1.31509 * 120.00322 * 184.91824 * 6 4 2 8 8 Si 1.86801 * 119.99600 * 4.91397 * 6 4 2 9 9 H 1.48500 * 109.47112 * 84.83773 * 8 6 4 10 10 H 1.48498 * 109.47103 * 204.83110 * 8 6 4 11 11 H 1.48495 * 109.47579 * 324.83584 * 8 6 4 12 12 N 1.46502 * 109.47024 * 120.00283 * 2 1 3 13 13 C 1.34779 * 119.99871 * 274.99598 * 12 2 1 14 14 O 1.21283 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00121 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.46555 * 60.00868 * 15 13 12 17 17 C 1.52992 * 109.47740 * 300.00675 * 15 13 12 18 18 N 1.46898 * 109.47199 * 64.99459 * 17 15 13 19 19 C 1.50699 * 109.47269 * 180.02562 * 15 13 12 20 20 C 1.38239 * 120.00244 * 240.00877 * 19 15 13 21 21 C 1.38234 * 119.99649 * 180.02562 * 20 19 15 22 22 C 1.38233 * 120.00499 * 359.94746 * 21 20 19 23 23 C 1.38237 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99874 * 59.98413 * 19 15 13 25 25 H 1.08997 * 109.46852 * 295.03595 * 1 2 3 26 26 H 1.08992 * 109.46831 * 55.03745 * 1 2 3 27 27 H 1.08999 * 109.47264 * 175.03455 * 1 2 3 28 28 H 0.97002 * 120.00353 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00565 * 94.99887 * 12 2 1 30 30 H 1.08998 * 109.47763 * 184.99496 * 17 15 13 31 31 H 1.08998 * 109.47066 * 304.99787 * 17 15 13 32 32 H 1.00901 * 111.00147 * 56.04719 * 18 17 15 33 33 H 1.00898 * 111.00689 * 180.02562 * 18 17 15 34 34 H 1.08001 * 119.99798 * 359.97173 * 20 19 15 35 35 H 1.08007 * 119.99634 * 179.97438 * 21 20 19 36 36 H 1.08003 * 119.99995 * 179.72860 * 22 21 20 37 37 H 1.08001 * 119.99820 * 179.97438 * 23 22 21 38 38 H 1.08007 * 119.99900 * 359.97438 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1354 -1.7855 -1.2291 6 6 2.3604 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3173 9 1 3.5992 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6488 -0.7289 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7044 -1.8824 3.9315 18 7 1.7463 -2.8856 2.8592 19 6 2.6991 0.2393 4.7415 20 6 3.9004 0.4986 5.3745 21 6 3.9463 1.3863 6.4331 22 6 2.7913 2.0156 6.8581 23 6 1.5903 1.7576 6.2241 24 6 1.5440 0.8686 5.1665 25 1 -0.3633 0.4349 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0238 -0.0889 28 1 2.9372 -0.1049 -4.2554 29 1 2.2490 -1.6318 1.1527 30 1 2.0167 -2.3405 4.8699 31 1 0.6882 -1.5019 4.0334 32 1 2.6896 -3.2070 2.7013 33 1 1.1301 -3.6583 3.0625 34 1 4.8029 0.0069 5.0424 35 1 4.8848 1.5885 6.9279 36 1 2.8264 2.7058 7.6880 37 1 0.6877 2.2490 6.5564 38 1 0.6056 0.6666 4.6714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061613292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -42.506894 kcal Electronic energy + Delta-G solvation = -19813.080920 eV Core-core repulsion = 16846.875622 eV Total energy + Delta-G solvation = -2966.205298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22244 -39.54325 -36.65709 -36.41200 -34.25301 -32.83826 -31.74213 -31.44386 -28.65129 -27.29455 -24.47718 -23.58436 -23.18861 -21.73378 -20.91452 -19.18558 -17.99249 -17.72106 -17.07571 -16.57419 -16.21275 -16.18460 -15.54428 -15.41520 -15.13632 -14.58869 -14.42794 -14.26780 -14.09241 -13.97047 -13.67949 -13.28370 -13.16266 -13.01274 -12.76889 -12.45249 -12.39441 -11.90238 -11.87284 -11.77879 -11.19617 -10.83068 -10.59675 -9.74768 -9.64259 -9.59401 -9.53751 -8.36875 -6.41274 0.45953 0.56756 1.28210 1.32335 1.43966 1.90870 2.27983 2.57501 2.94967 3.11807 3.42965 3.83418 3.99915 4.12265 4.18609 4.23751 4.31217 4.34458 4.49893 4.61430 4.68184 4.74082 4.78843 4.87887 4.94802 5.09875 5.17427 5.20037 5.43825 5.49880 5.59677 5.65488 5.74233 5.90174 6.15687 6.20823 6.21786 6.62921 6.64115 7.13055 7.24763 7.68144 8.78321 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.005593 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.214625 B = 5004.702808 C = 5509.353378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.232 3.768 3 H 0.023 0.977 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.924 3.076 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.261 1.261 12 N -0.685 5.685 13 C 0.505 3.495 14 O -0.601 6.601 15 C -0.063 4.063 16 H 0.116 0.884 17 C 0.088 3.912 18 N -0.860 5.860 19 C -0.078 4.078 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.103 4.103 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.270 0.730 29 H 0.412 0.588 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.352 0.648 33 H 0.360 0.640 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -1.777 21.268 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.128 3.872 3 H 0.041 0.959 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.750 3.250 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.185 1.185 12 N -0.336 5.336 13 C 0.292 3.708 14 O -0.484 6.484 15 C -0.085 4.085 16 H 0.133 0.867 17 C -0.043 4.043 18 N -0.394 5.394 19 C -0.079 4.079 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.121 4.121 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.252 0.748 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.351 -0.405 20.602 20.609 hybrid contribution 0.368 -0.170 -0.063 0.410 sum 0.719 -0.575 20.539 20.560 Atomic orbital electron populations 1.22050 0.97490 1.00959 0.98906 1.18836 0.91829 0.92842 0.83706 0.95898 1.21188 1.43842 0.94792 0.95999 0.92478 1.25552 0.93965 1.02016 0.95041 1.69971 1.46995 1.37525 1.02396 0.86095 0.79468 0.81923 0.77525 1.20193 1.20114 1.18521 1.46436 1.63999 1.14874 1.08301 1.20934 0.77690 0.86745 0.85452 1.90622 1.53742 1.18119 1.85903 1.20392 1.02366 0.95478 0.90226 0.86655 1.21559 0.98422 0.90983 0.93381 1.58483 1.15459 1.19071 1.46347 1.19399 0.94459 0.98369 0.95678 1.21297 0.96938 0.99178 0.96717 1.21424 0.99440 0.96646 0.97041 1.21471 0.92393 0.99950 1.00494 1.21371 0.99337 0.98230 0.96280 1.20982 0.97878 0.96927 0.96302 0.94874 0.93835 0.92498 0.92094 0.74835 0.91920 0.91705 0.83449 0.82443 0.84554 0.83535 0.83667 0.84790 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 9.47 71.98 0.68 -5.48 16 2 C 0.23 11.51 2.22 44.24 0.10 11.61 16 3 H 0.02 1.25 4.73 -2.39 -0.01 1.24 16 4 C -0.52 -28.90 9.05 25.60 0.23 -28.67 16 5 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 6 C 0.03 1.98 5.47 84.66 0.46 2.44 16 7 N -0.93 -56.15 13.96 21.45 0.30 -55.86 16 8 Si 0.92 46.10 26.99 68.60 1.85 47.95 16 9 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -12.89 6.82 99.48 0.68 -12.22 16 12 N -0.68 -28.47 4.78 -446.09 -2.13 -30.60 16 13 C 0.51 19.87 6.99 87.66 0.61 20.48 16 14 O -0.60 -28.50 14.77 -3.04 -0.04 -28.54 16 15 C -0.06 -1.74 2.58 -12.29 -0.03 -1.77 16 16 H 0.12 2.73 7.88 -2.39 -0.02 2.71 16 17 C 0.09 1.91 5.90 86.30 0.51 2.41 16 18 N -0.86 -17.35 7.24 -186.74 -1.35 -18.70 16 19 C -0.08 -2.17 4.40 -19.87 -0.09 -2.25 16 20 C -0.12 -2.91 9.67 22.27 0.22 -2.69 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 23 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 24 C -0.10 -2.95 7.98 22.27 0.18 -2.77 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.41 15.43 6.48 -92.71 -0.60 14.83 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.59 7.57 -2.39 -0.02 1.57 16 32 H 0.35 6.02 8.96 -89.69 -0.80 5.21 16 33 H 0.36 5.70 9.08 -89.70 -0.81 4.89 16 34 H 0.14 2.62 7.95 -2.91 -0.02 2.60 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.10 3.19 7.58 -2.91 -0.02 3.17 16 Total: -1.00 -71.14 315.97 1.00 -70.14 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -1.16 Total: 30.08 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.54 Total: -14.46 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.19 Total: -105.16 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.85 Total: 47.95 kcal Total: -71.14 1.00 -70.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061613292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.635 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds