Wall clock time and date at job start Mon Mar 30 2020 04:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50696 * 109.47253 * 239.99411 * 2 1 3 5 5 H 1.08001 * 120.00103 * 273.41236 * 4 2 1 6 6 C 1.37869 * 119.99981 * 93.41168 * 4 2 1 7 7 N 1.31520 * 120.00187 * 181.74829 * 6 4 2 8 8 Si 1.86799 * 120.00104 * 1.75191 * 6 4 2 9 9 H 1.48498 * 109.47401 * 91.03223 * 8 6 4 10 10 H 1.48504 * 109.47169 * 211.03473 * 8 6 4 11 11 H 1.48494 * 109.47012 * 331.03070 * 8 6 4 12 12 N 1.46499 * 109.46830 * 119.99521 * 2 1 3 13 13 C 1.46507 * 119.99986 * 59.99992 * 12 2 1 14 14 C 1.34774 * 120.00136 * 240.00013 * 12 2 1 15 15 O 1.21279 * 120.00197 * 4.67891 * 14 12 2 16 16 C 1.50703 * 120.00244 * 184.67890 * 14 12 2 17 17 H 1.09005 * 109.47018 * 329.39861 * 16 14 12 18 18 N 1.46906 * 109.47243 * 209.40332 * 16 14 12 19 19 C 1.50699 * 109.47344 * 89.40246 * 16 14 12 20 20 C 1.38232 * 120.00158 * 81.29624 * 19 16 14 21 21 C 1.38229 * 119.99889 * 179.81150 * 20 19 16 22 22 C 1.38234 * 120.00112 * 0.39945 * 21 20 19 23 23 C 1.38237 * 120.00237 * 359.85704 * 22 21 20 24 24 C 1.38235 * 119.99435 * 359.95512 * 23 22 21 25 25 H 1.09001 * 109.47240 * 303.92800 * 1 2 3 26 26 H 1.08999 * 109.46931 * 63.93030 * 1 2 3 27 27 H 1.09005 * 109.47166 * 183.92655 * 1 2 3 28 28 H 0.96996 * 120.00338 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.46814 * 264.68954 * 13 12 2 30 30 H 1.08996 * 109.46877 * 24.69162 * 13 12 2 31 31 H 1.08999 * 109.46718 * 144.69215 * 13 12 2 32 32 H 1.00895 * 110.99770 * 176.04330 * 18 16 14 33 33 H 1.00903 * 110.99609 * 299.99987 * 18 16 14 34 34 H 1.08000 * 119.99531 * 0.02562 * 20 19 16 35 35 H 1.08005 * 120.00162 * 180.22735 * 21 20 19 36 36 H 1.07997 * 120.00113 * 179.83061 * 22 21 20 37 37 H 1.07992 * 119.99959 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.99899 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1599 -1.7829 -1.2204 6 6 2.3291 0.0084 -2.3687 7 7 2.7347 -0.6152 -3.4533 8 14 2.1553 1.8683 -2.3706 9 1 3.4448 2.4865 -1.9702 10 1 1.7871 2.3297 -3.7333 11 1 1.0957 2.2674 -1.4098 12 7 2.0183 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0164 1.1474 1.9362 16 6 3.3820 -0.7730 3.2583 17 1 2.7129 -1.5818 3.5521 18 7 3.5517 0.1554 4.3841 19 6 4.7219 -1.3446 2.8722 20 6 5.8468 -0.5413 2.8890 21 6 7.0764 -1.0667 2.5386 22 6 7.1799 -2.3931 2.1635 23 6 6.0541 -3.1951 2.1417 24 6 4.8251 -2.6707 2.4958 25 1 -0.3634 0.5736 0.8527 26 1 -0.3633 0.4516 -0.9231 27 1 -0.3634 -1.0253 0.0704 28 1 2.9439 -0.1093 -4.2541 29 1 0.7909 -2.1447 2.0782 30 1 1.4374 -2.5728 0.4761 31 1 2.5012 -2.6053 1.9028 32 1 3.8848 -0.3283 5.2045 33 1 4.1683 0.9149 4.1367 34 1 5.7654 0.4958 3.1792 35 1 7.9560 -0.4401 2.5552 36 1 8.1401 -2.8029 1.8872 37 1 6.1349 -4.2312 1.8482 38 1 3.9456 -3.2972 2.4791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063092930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:20 Heat of formation + Delta-G solvation = -2.483214 kcal Electronic energy + Delta-G solvation = -20276.653744 eV Core-core repulsion = 17312.184003 eV Total energy + Delta-G solvation = -2964.469741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03857 -38.46406 -35.60983 -34.51341 -32.64013 -31.03583 -30.29492 -30.01844 -26.35935 -25.69066 -25.15961 -22.48089 -22.09432 -20.38327 -18.31524 -17.44524 -17.08374 -16.53758 -15.70215 -15.40510 -14.86941 -14.51537 -14.37926 -14.05407 -13.54209 -13.29490 -13.15610 -12.62518 -12.51402 -12.33793 -12.25091 -11.99043 -11.78327 -11.36243 -11.16845 -11.08307 -10.82579 -10.69320 -10.42082 -9.76648 -9.55032 -9.22239 -8.85826 -8.65682 -8.61576 -8.46571 -7.64478 -6.16128 -4.17950 1.35837 1.47475 3.27201 3.31067 3.38971 3.45796 3.72677 3.92628 4.38988 4.77780 4.82603 4.88269 5.04131 5.10664 5.15746 5.28178 5.33878 5.52247 5.64188 5.75895 5.93770 6.01235 6.07811 6.26553 6.33959 6.45370 6.50139 6.56256 6.57690 6.61230 6.95765 7.00561 7.04584 7.13763 7.46224 7.51205 7.65327 8.15355 8.50956 8.84622 8.95225 9.46578 10.95799 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.007305 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.840702 B = 3831.843472 C = 4246.201465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.584 5.584 13 C 0.075 3.925 14 C 0.521 3.479 15 O -0.548 6.548 16 C 0.113 3.887 17 H 0.105 0.895 18 N -0.823 5.823 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.105 4.105 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.343 0.657 33 H 0.351 0.649 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -5.002 13.811 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.123 3.877 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.315 5.315 13 C -0.068 4.068 14 C 0.307 3.693 15 O -0.426 6.426 16 C -0.002 4.002 17 H 0.123 0.877 18 N -0.354 5.354 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.897 -4.204 13.448 14.619 hybrid contribution 1.018 0.490 -0.376 1.191 sum 4.915 -3.714 13.072 14.451 Atomic orbital electron populations 1.22226 0.98359 1.00284 0.99671 1.19314 0.90800 0.94918 0.82645 0.91853 1.21120 1.44774 0.95936 0.94353 0.90409 1.24932 0.93750 0.98401 0.95362 1.69888 1.44652 1.36087 1.02319 0.86917 0.79779 0.86172 0.77201 1.19925 1.21266 1.18475 1.48175 1.48983 1.11574 1.22787 1.21804 0.99028 0.83350 1.02656 1.20011 0.79059 0.87202 0.83018 1.90605 1.61023 1.15645 1.75374 1.20413 0.93222 0.95044 0.91551 0.87740 1.58680 1.58639 1.12938 1.05158 1.20472 0.95445 0.94512 1.01043 1.20950 0.92427 0.99353 0.99873 1.21086 0.97383 0.95544 0.99588 1.21151 0.98638 0.94189 0.99801 1.21127 0.92685 0.99989 0.99664 1.21107 0.97816 0.94741 0.98685 0.95464 0.92462 0.93374 0.92452 0.93722 0.89693 0.92473 0.84361 0.83344 0.86119 0.86104 0.86173 0.85918 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.12 37.16 0.34 -2.83 16 2 C 0.22 5.49 2.18 -69.08 -0.15 5.34 16 3 H 0.06 1.72 4.17 -51.93 -0.22 1.50 16 4 C -0.52 -14.48 8.70 -34.44 -0.30 -14.78 16 5 H 0.08 2.26 6.91 -52.49 -0.36 1.90 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.87 22.40 26.74 -169.99 -4.55 17.86 16 9 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.48 6.56 56.52 0.37 -6.11 16 12 N -0.58 -12.37 2.75 -175.26 -0.48 -12.85 16 13 C 0.08 1.25 8.72 59.85 0.52 1.77 16 14 C 0.52 10.90 6.83 -10.99 -0.07 10.82 16 15 O -0.55 -13.44 15.69 5.56 0.09 -13.36 16 16 C 0.11 1.76 2.72 -70.01 -0.19 1.57 16 17 H 0.10 1.41 6.44 -51.93 -0.33 1.08 16 18 N -0.82 -11.41 8.88 -6.64 -0.06 -11.47 16 19 C -0.11 -1.69 4.93 -104.62 -0.52 -2.20 16 20 C -0.11 -1.59 9.30 -39.59 -0.37 -1.96 16 21 C -0.12 -1.57 10.05 -39.59 -0.40 -1.96 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.11 -1.45 9.01 -39.58 -0.36 -1.81 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.25 7.76 -51.93 -0.40 0.85 16 27 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.51 6.63 -51.93 -0.34 1.17 16 31 H 0.06 0.80 3.68 -51.93 -0.19 0.61 16 32 H 0.34 3.67 9.06 -39.29 -0.36 3.31 16 33 H 0.35 5.05 6.87 -39.29 -0.27 4.78 16 34 H 0.12 1.71 6.61 -52.49 -0.35 1.37 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.50 6.02 -52.49 -0.32 1.18 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -33.48 306.37 -6.81 -40.29 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.81 Total: 8.75 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.39 Total: -7.65 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.23 Total: -50.51 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.55 Total: 17.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.48 -6.81 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063092930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.805 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds