Wall clock time and date at job start Mon Mar 30 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 C 1.50705 * 109.47163 * 240.00057 * 2 1 3 5 5 H 1.07997 * 119.99497 * 240.00064 * 4 2 1 6 6 C 1.37875 * 120.00110 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47115 * 90.00320 * 8 6 4 10 10 H 1.48499 * 109.46700 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.47054 * 329.99760 * 8 6 4 12 12 N 1.46497 * 109.47057 * 120.00065 * 2 1 3 13 13 C 1.46495 * 120.00294 * 59.99874 * 12 2 1 14 14 C 1.34783 * 119.99947 * 239.99742 * 12 2 1 15 15 O 1.21554 * 119.99555 * 4.87236 * 14 12 2 16 16 C 1.47842 * 120.00065 * 184.86673 * 14 12 2 17 17 C 1.39581 * 120.14502 * 320.81468 * 16 14 12 18 18 C 1.37956 * 119.85166 * 179.72291 * 17 16 14 19 19 C 1.38356 * 120.14468 * 0.27926 * 18 17 16 20 20 C 1.50704 * 119.85551 * 179.97438 * 19 18 17 21 21 N 1.46906 * 109.47057 * 89.99910 * 20 19 18 22 22 C 1.38364 * 120.29411 * 0.02562 * 19 18 17 23 23 C 1.37956 * 120.14365 * 359.97438 * 22 19 18 24 24 H 1.09004 * 109.47587 * 300.00125 * 1 2 3 25 25 H 1.09006 * 109.47457 * 60.00317 * 1 2 3 26 26 H 1.08998 * 109.47682 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99688 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47329 * 265.55250 * 13 12 2 29 29 H 1.08997 * 109.47120 * 25.55222 * 13 12 2 30 30 H 1.09002 * 109.47398 * 145.55262 * 13 12 2 31 31 H 1.07997 * 120.06997 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.92846 * 180.26145 * 18 17 16 33 33 H 1.08989 * 109.47476 * 210.00178 * 20 19 18 34 34 H 1.08996 * 109.47038 * 330.00578 * 20 19 18 35 35 H 1.00903 * 110.99866 * 56.04655 * 21 20 19 36 36 H 1.00897 * 110.99954 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.92597 * 179.97438 * 22 19 18 38 38 H 1.08000 * 120.07358 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4865 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0140 1.1508 1.9377 16 6 3.3744 -0.7601 3.2336 17 6 2.6243 -1.7273 3.9044 18 6 3.1746 -2.4037 4.9734 19 6 4.4652 -2.1211 5.3844 20 6 5.0598 -2.8636 6.5533 21 7 5.7397 -4.0730 6.0705 22 6 5.2119 -1.1591 4.7277 23 6 4.6734 -0.4754 3.6573 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 0.7818 -2.1446 2.0657 29 1 1.4523 -2.5768 0.4745 30 1 2.4956 -2.6017 1.9165 31 1 1.6166 -1.9484 3.5848 32 1 2.5968 -3.1553 5.4907 33 1 5.7781 -2.2222 7.0638 34 1 4.2669 -3.1448 7.2464 35 1 6.4364 -3.8439 5.3775 36 1 6.1467 -4.5890 6.8361 37 1 6.2186 -0.9429 5.0539 38 1 5.2575 0.2751 3.1453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:16 Heat of formation + Delta-G solvation = -4.111529 kcal Electronic energy + Delta-G solvation = -19507.416407 eV Core-core repulsion = 16542.876057 eV Total energy + Delta-G solvation = -2964.540350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95799 -38.24347 -35.36882 -34.90388 -32.91898 -30.98162 -30.76572 -29.03269 -26.34507 -25.41216 -25.17021 -22.64810 -22.10426 -20.68515 -18.82420 -16.87671 -16.59810 -16.18618 -15.87709 -15.21464 -15.05598 -14.62461 -14.56473 -14.03661 -13.84056 -13.37630 -12.97317 -12.62777 -12.51231 -12.43644 -12.14704 -11.63004 -11.56762 -11.20988 -11.06739 -10.87563 -10.79223 -10.65395 -10.25948 -10.16867 -9.20781 -9.10796 -8.98023 -8.84289 -8.60306 -8.42290 -7.59465 -6.07177 -4.15358 1.10419 1.47837 3.26803 3.29997 3.34276 3.37739 3.82770 4.09880 4.40098 4.46437 4.65868 4.79336 5.02322 5.09340 5.18040 5.24271 5.36585 5.46588 5.66816 5.81077 5.91719 5.99280 6.10988 6.35843 6.39719 6.54092 6.55550 6.76893 6.77966 6.84678 6.98388 7.07248 7.12616 7.42711 7.53600 7.71757 8.02029 8.19310 8.51134 8.82261 9.02909 9.51146 10.98200 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.004565 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.345676 B = 6131.687316 C = 6359.961565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.078 3.922 14 C 0.543 3.457 15 O -0.549 6.549 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.079 4.079 20 C 0.102 3.898 21 N -0.846 5.846 22 C -0.124 4.124 23 C -0.070 4.070 24 H 0.011 0.989 25 H 0.094 0.906 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.344 0.656 36 H 0.341 0.659 37 H 0.121 0.879 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 -8.765 15.865 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.066 4.066 14 C 0.330 3.670 15 O -0.428 6.428 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.126 4.126 19 C -0.079 4.079 20 C -0.028 4.028 21 N -0.376 5.376 22 C -0.142 4.142 23 C -0.089 4.089 24 H 0.031 0.969 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.040 -8.246 15.352 18.141 hybrid contribution 1.125 -0.121 -0.516 1.244 sum 6.166 -8.366 14.836 18.114 Atomic orbital electron populations 1.22083 0.98047 0.99437 1.00877 1.18987 0.91030 0.94541 0.79725 0.91836 1.21327 1.31912 1.13070 0.90253 0.92176 1.24891 0.94932 0.94955 0.98962 1.69885 1.36341 1.22535 1.23780 0.86482 0.79215 0.79295 0.82340 1.20576 1.21088 1.19912 1.48174 1.48260 1.11645 1.23275 1.21924 0.98742 0.83430 1.02455 1.18310 0.79501 0.86846 0.82346 1.90730 1.61383 1.15083 1.75641 1.20243 0.95617 0.97996 0.97604 1.21716 1.00523 0.94278 0.94937 1.20904 0.95050 0.99650 0.97003 1.19849 0.94642 0.96363 0.97084 1.20705 0.97844 0.90186 0.94090 1.58693 1.37378 1.23347 1.18185 1.20915 0.99636 0.97148 0.96532 1.21171 0.94191 0.98031 0.95485 0.96949 0.88773 0.95123 0.92660 0.93724 0.89988 0.92078 0.84567 0.85715 0.94684 0.90183 0.84373 0.84587 0.86146 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.15 0.33 -3.21 16 2 C 0.26 6.70 2.63 -69.08 -0.18 6.51 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -14.38 7.96 -34.44 -0.27 -14.65 16 5 H 0.06 1.62 7.41 -52.49 -0.39 1.23 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.58 -12.91 2.75 -176.38 -0.49 -13.40 16 13 C 0.08 1.37 7.83 59.84 0.47 1.84 16 14 C 0.54 11.99 7.36 -12.33 -0.09 11.89 16 15 O -0.55 -14.20 16.25 5.32 0.09 -14.11 16 16 C -0.11 -1.93 5.24 -104.97 -0.55 -2.48 16 17 C -0.10 -1.38 7.57 -39.18 -0.30 -1.67 16 18 C -0.11 -1.30 9.68 -39.64 -0.38 -1.69 16 19 C -0.08 -0.90 5.40 -104.53 -0.56 -1.46 16 20 C 0.10 0.87 6.91 -4.97 -0.03 0.84 16 21 N -0.85 -6.81 9.61 -11.41 -0.11 -6.92 16 22 C -0.12 -1.51 9.68 -39.64 -0.38 -1.90 16 23 C -0.07 -1.08 9.63 -39.19 -0.38 -1.46 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 26 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.67 6.89 -51.92 -0.36 0.31 16 29 H 0.08 1.51 7.09 -51.93 -0.37 1.14 16 30 H 0.06 0.95 5.81 -51.93 -0.30 0.65 16 31 H 0.14 1.82 5.30 -52.49 -0.28 1.54 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.03 0.26 8.08 -51.94 -0.42 -0.16 16 34 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.34 2.66 8.99 -39.29 -0.35 2.31 16 36 H 0.34 1.97 9.08 -39.29 -0.36 1.62 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 38 H 0.13 2.04 8.05 -52.49 -0.42 1.62 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -31.89 312.94 -7.76 -39.65 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.14 Total: 4.34 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.43 Total: -5.76 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.03 Total: -44.93 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.89 -7.76 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.534 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds