Wall clock time and date at job start Mon Mar 30 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 C 1.50705 * 109.47163 * 240.00057 * 2 1 3 5 5 H 1.07997 * 119.99497 * 240.00064 * 4 2 1 6 6 C 1.37875 * 120.00110 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47115 * 90.00320 * 8 6 4 10 10 H 1.48499 * 109.46700 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.47054 * 329.99760 * 8 6 4 12 12 N 1.46497 * 109.47057 * 120.00065 * 2 1 3 13 13 C 1.46495 * 120.00294 * 59.99874 * 12 2 1 14 14 C 1.34783 * 119.99947 * 239.99742 * 12 2 1 15 15 O 1.21554 * 119.99555 * 4.87236 * 14 12 2 16 16 C 1.47842 * 120.00065 * 184.86673 * 14 12 2 17 17 C 1.39581 * 120.14502 * 320.81468 * 16 14 12 18 18 C 1.37956 * 119.85166 * 179.72291 * 17 16 14 19 19 C 1.38356 * 120.14468 * 0.27926 * 18 17 16 20 20 C 1.50704 * 119.85551 * 179.97438 * 19 18 17 21 21 N 1.46906 * 109.47057 * 89.99910 * 20 19 18 22 22 C 1.38364 * 120.29411 * 0.02562 * 19 18 17 23 23 C 1.37956 * 120.14365 * 359.97438 * 22 19 18 24 24 H 1.09004 * 109.47587 * 300.00125 * 1 2 3 25 25 H 1.09006 * 109.47457 * 60.00317 * 1 2 3 26 26 H 1.08998 * 109.47682 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99688 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47329 * 265.55250 * 13 12 2 29 29 H 1.08997 * 109.47120 * 25.55222 * 13 12 2 30 30 H 1.09002 * 109.47398 * 145.55262 * 13 12 2 31 31 H 1.07997 * 120.06997 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.92846 * 180.26145 * 18 17 16 33 33 H 1.08989 * 109.47476 * 210.00178 * 20 19 18 34 34 H 1.08996 * 109.47038 * 330.00578 * 20 19 18 35 35 H 1.00903 * 110.99866 * 56.04655 * 21 20 19 36 36 H 1.00897 * 110.99954 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.92597 * 179.97438 * 22 19 18 38 38 H 1.08000 * 120.07358 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4865 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0140 1.1508 1.9377 16 6 3.3744 -0.7601 3.2336 17 6 2.6243 -1.7273 3.9044 18 6 3.1746 -2.4037 4.9734 19 6 4.4652 -2.1211 5.3844 20 6 5.0598 -2.8636 6.5533 21 7 5.7397 -4.0730 6.0705 22 6 5.2119 -1.1591 4.7277 23 6 4.6734 -0.4754 3.6573 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 0.7818 -2.1446 2.0657 29 1 1.4523 -2.5768 0.4745 30 1 2.4956 -2.6017 1.9165 31 1 1.6166 -1.9484 3.5848 32 1 2.5968 -3.1553 5.4907 33 1 5.7781 -2.2222 7.0638 34 1 4.2669 -3.1448 7.2464 35 1 6.4364 -3.8439 5.3775 36 1 6.1467 -4.5890 6.8361 37 1 6.2186 -0.9429 5.0539 38 1 5.2575 0.2751 3.1453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:16 Heat of formation + Delta-G solvation = -26.324986 kcal Electronic energy + Delta-G solvation = -19508.379654 eV Core-core repulsion = 16542.876057 eV Total energy + Delta-G solvation = -2965.503598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.35743 -39.58899 -37.22710 -35.78397 -34.79407 -32.31695 -31.86769 -30.65934 -27.84824 -27.33499 -26.39813 -23.85683 -23.35932 -22.06285 -20.44797 -18.61007 -18.07990 -17.56569 -17.22735 -16.66568 -16.34914 -15.87955 -15.63797 -15.42762 -15.14271 -14.55044 -14.41317 -14.25837 -13.92711 -13.66533 -13.51794 -13.23457 -13.01007 -12.84379 -12.74244 -12.68628 -12.26494 -12.22978 -12.13511 -11.88719 -11.23384 -10.78863 -10.53198 -9.90424 -9.83891 -9.52058 -9.37289 -8.16850 -6.34025 -0.03678 0.43412 1.40646 1.42365 1.52475 1.80935 2.26721 2.45676 2.81138 3.11106 3.58976 3.81497 3.84792 3.99867 4.04666 4.36526 4.36975 4.45682 4.61848 4.67718 4.72732 4.75290 4.86667 4.93676 4.98078 5.02764 5.10059 5.30305 5.41389 5.45578 5.57226 5.58983 5.63839 5.94696 6.00696 6.12760 6.23560 6.63952 6.72596 6.73733 7.23941 7.41135 8.87966 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.004565 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.345676 B = 6131.687316 C = 6359.961565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.008 0.992 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.534 3.466 15 O -0.605 6.605 16 C -0.140 4.140 17 C -0.094 4.094 18 C -0.102 4.102 19 C -0.066 4.066 20 C 0.104 3.896 21 N -0.854 5.854 22 C -0.116 4.116 23 C -0.087 4.087 24 H 0.019 0.981 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.266 0.734 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.345 0.655 36 H 0.356 0.644 37 H 0.149 0.851 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -11.841 17.746 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.580 4.580 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.319 5.319 13 C -0.065 4.065 14 C 0.324 3.676 15 O -0.489 6.489 16 C -0.143 4.143 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.067 4.067 20 C -0.026 4.026 21 N -0.386 5.386 22 C -0.134 4.134 23 C -0.106 4.106 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.664 -11.374 17.264 21.436 hybrid contribution 0.981 0.823 -0.984 1.615 sum 6.645 -10.552 16.279 20.506 Atomic orbital electron populations 1.21868 0.96793 1.00292 1.00012 1.18610 0.91945 0.92170 0.81437 0.97427 1.21551 1.32175 1.13173 0.91075 0.92146 1.25753 0.94976 0.95596 1.02045 1.70028 1.37207 1.23791 1.24549 0.85411 0.78844 0.78270 0.78225 1.19019 1.21008 1.19643 1.48166 1.48285 1.13352 1.22110 1.22158 1.00852 0.80646 1.02804 1.19138 0.78684 0.86502 0.83311 1.90677 1.63196 1.17677 1.77334 1.19923 0.96937 1.00157 0.97318 1.21783 1.00619 0.93487 0.95350 1.21248 0.95513 0.99373 0.95922 1.20282 0.94224 0.95201 0.96988 1.20736 0.98657 0.90428 0.92776 1.58667 1.37815 1.23143 1.19004 1.21163 1.00863 0.96399 0.95005 1.21195 0.93786 0.98684 0.96924 0.96206 0.91182 0.93189 0.92522 0.90715 0.90905 0.89906 0.83722 0.82730 0.93074 0.88865 0.84229 0.82984 0.83340 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.97 71.98 0.65 -5.89 16 2 C 0.26 14.16 2.63 44.25 0.12 14.28 16 3 H 0.01 0.50 6.91 -2.39 -0.02 0.49 16 4 C -0.54 -30.28 7.96 25.60 0.20 -30.08 16 5 H 0.06 3.29 7.41 -2.91 -0.02 3.27 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.48 16 8 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.59 -26.84 2.75 -830.22 -2.29 -29.13 16 13 C 0.08 2.62 7.83 127.77 1.00 3.62 16 14 C 0.53 24.68 7.36 86.78 0.64 25.32 16 15 O -0.61 -33.72 16.25 -3.88 -0.06 -33.78 16 16 C -0.14 -4.89 5.24 -20.09 -0.11 -5.00 16 17 C -0.09 -2.50 7.57 22.53 0.17 -2.33 16 18 C -0.10 -2.10 9.68 22.23 0.22 -1.88 16 19 C -0.07 -1.26 5.40 -19.80 -0.11 -1.37 16 20 C 0.10 1.30 6.91 85.56 0.59 1.89 16 21 N -0.85 -10.23 9.61 -190.00 -1.83 -12.06 16 22 C -0.12 -2.57 9.68 22.23 0.22 -2.35 16 23 C -0.09 -2.70 9.63 22.53 0.22 -2.48 16 24 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 26 H 0.05 2.23 7.67 -2.39 -0.02 2.22 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.07 2.08 6.89 -2.38 -0.02 2.06 16 29 H 0.07 2.60 7.09 -2.39 -0.02 2.59 16 30 H 0.08 2.44 5.81 -2.39 -0.01 2.43 16 31 H 0.15 3.50 5.30 -2.91 -0.02 3.49 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.05 0.51 8.08 -2.39 -0.02 0.50 16 34 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.34 4.07 8.99 -89.69 -0.81 3.27 16 36 H 0.36 2.69 9.08 -89.70 -0.81 1.87 16 37 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.11 3.77 8.05 -2.91 -0.02 3.74 16 Total: -1.00 -73.32 312.94 1.81 -71.50 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.53 Total: 16.23 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.25 Total: -4.93 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.87 Total: -94.67 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.06 Total: -33.78 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.32 1.81 -71.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.179 kcal (2) G-P(sol) polarization free energy of solvation -73.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds