Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 N 1.46907 * 109.47204 * 119.99658 * 2 1 3 5 5 C 1.52998 * 109.47480 * 239.99615 * 2 1 3 6 6 C 1.53000 * 109.47256 * 174.99703 * 5 2 1 7 7 C 1.50707 * 109.47110 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99780 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00067 * 180.02562 * 7 6 5 10 10 C 1.39231 * 120.00058 * 184.02914 * 9 7 6 11 11 C 1.39481 * 119.83476 * 324.50714 * 10 9 7 12 12 C 1.36377 * 120.16641 * 179.71635 * 11 10 9 13 13 C 1.40867 * 119.82903 * 0.56994 * 12 11 10 14 14 C 1.41151 * 120.16256 * 179.67519 * 13 12 11 15 15 H 1.07997 * 120.00255 * 214.80128 * 14 13 12 16 16 C 1.39907 * 119.99951 * 34.81062 * 14 13 12 17 17 N 1.30871 * 119.99836 * 355.55275 * 16 14 13 18 18 Si 1.86802 * 120.00195 * 175.55822 * 16 14 13 19 19 H 1.48505 * 109.47294 * 59.99282 * 18 16 14 20 20 H 1.48490 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46924 * 299.99940 * 18 16 14 22 22 C 1.40869 * 119.67447 * 359.70168 * 13 12 11 23 23 C 1.36380 * 119.82439 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.46818 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47254 * 299.99772 * 1 2 3 26 26 H 1.08994 * 109.47100 * 60.00383 * 1 2 3 27 27 H 1.00905 * 111.00019 * 176.05030 * 4 2 1 28 28 H 1.00900 * 110.99559 * 299.99999 * 4 2 1 29 29 H 1.09002 * 109.47117 * 54.99950 * 5 2 1 30 30 H 1.09000 * 109.47485 * 295.00024 * 5 2 1 31 31 H 1.09000 * 109.47336 * 60.00273 * 6 5 2 32 32 H 1.08994 * 109.47438 * 299.99895 * 6 5 2 33 33 H 0.97006 * 119.99600 * 4.31232 * 9 7 6 34 34 H 1.07998 * 119.91658 * 359.97438 * 11 10 9 35 35 H 1.08003 * 120.08144 * 180.25151 * 12 11 10 36 36 H 0.97000 * 119.99842 * 180.02562 * 17 16 14 37 37 H 1.07994 * 120.08952 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.91133 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0401 -0.7213 -1.2491 6 6 3.5649 -0.6133 -1.3136 7 6 4.0672 -1.3232 -2.5444 8 8 3.2828 -1.8621 -3.2962 9 7 5.3882 -1.3593 -2.8096 10 6 5.8459 -1.9418 -3.9885 11 6 5.1945 -3.0602 -4.5083 12 6 5.6335 -3.6326 -5.6657 13 6 6.7552 -3.0988 -6.3299 14 6 7.2198 -3.6898 -7.5245 15 1 8.2778 -3.7127 -7.7398 16 6 6.3096 -4.2459 -8.4299 17 7 5.0366 -4.2964 -8.1302 18 14 6.9112 -4.9164 -10.0663 19 1 7.8892 -6.0076 -9.8248 20 1 5.7587 -5.4470 -10.8377 21 1 7.5644 -3.8280 -10.8371 22 6 7.4113 -1.9724 -5.7957 23 6 6.9565 -1.4069 -4.6410 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 3.0263 -0.7625 1.1910 28 1 1.6961 -0.2348 2.0385 29 1 1.6055 -0.2619 -2.1369 30 1 1.7518 -1.7716 -1.2055 31 1 3.9996 -1.0727 -0.4259 32 1 3.8532 0.4369 -1.3573 33 1 6.0202 -0.9831 -2.1771 34 1 4.3377 -3.4714 -3.9952 35 1 5.1256 -4.4962 -6.0691 36 1 4.4056 -4.6823 -8.7578 37 1 8.2721 -1.5579 -6.2991 38 1 7.4587 -0.5436 -4.2300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070315717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -30.874058 kcal Electronic energy + Delta-G solvation = -18853.367753 eV Core-core repulsion = 15887.666892 eV Total energy + Delta-G solvation = -2965.700860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69754 -37.52877 -36.66526 -34.39015 -32.88300 -31.46803 -29.50604 -29.35024 -28.76995 -25.52411 -23.95472 -21.43368 -20.93291 -20.21417 -19.44910 -17.26631 -17.01373 -16.38768 -16.14081 -15.53528 -15.15077 -14.78526 -14.01483 -13.88548 -13.58933 -13.30260 -12.70849 -12.57614 -12.28080 -12.08856 -11.97976 -11.68631 -11.47509 -11.41384 -11.13980 -11.07769 -10.91846 -10.89246 -10.46964 -9.89766 -9.86898 -9.40842 -8.97451 -8.90056 -8.69449 -7.49760 -6.86213 -6.56649 -4.30781 2.61852 3.04044 3.11475 3.12494 3.14594 3.38470 3.76339 4.00855 4.30361 4.73364 4.75354 4.78558 5.04725 5.18744 5.25406 5.39622 5.61215 5.65350 5.70506 5.77636 6.03636 6.07017 6.15159 6.33658 6.41243 6.83677 6.94439 7.03396 7.07100 7.20759 7.22970 7.32852 7.66189 7.70848 8.01601 8.11590 8.23380 8.36924 8.69710 8.82164 8.95875 9.04632 10.34233 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040732 B = 0.003583 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.257667 B = 7813.549334 C = 8320.886396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.033 0.967 4 N -0.847 5.847 5 C -0.099 4.099 6 C -0.139 4.139 7 C 0.497 3.503 8 O -0.527 6.527 9 N -0.656 5.656 10 C 0.005 3.995 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.808 5.808 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.205 4.205 23 C -0.115 4.115 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.340 0.660 28 H 0.338 0.662 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.394 0.606 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.096 0.904 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 7.639 13.683 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.051 0.949 4 N -0.379 5.379 5 C -0.137 4.137 6 C -0.180 4.180 7 C 0.283 3.717 8 O -0.403 6.403 9 N -0.299 5.299 10 C -0.088 4.088 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.097 3.903 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.435 5.435 18 Si 0.741 3.259 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.225 4.225 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.227 0.773 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.535 6.567 12.761 15.051 hybrid contribution 1.077 0.987 -0.257 1.483 sum -3.458 7.555 12.504 15.013 Atomic orbital electron populations 1.21799 0.94406 1.02735 1.01364 1.21381 0.95648 0.94839 0.90656 0.94869 1.58794 1.16277 1.58695 1.04126 1.21421 0.92982 1.02718 0.96606 1.21679 0.98119 1.01219 0.96968 1.20593 0.82458 0.81222 0.87381 1.90714 1.55229 1.44935 1.49405 1.43042 1.06781 1.58958 1.21152 1.17306 1.01186 0.99062 0.91201 1.20650 0.98969 0.94241 0.97531 1.21310 0.99768 1.01653 0.93653 1.17718 0.91392 0.89640 0.91530 1.19442 0.94526 1.33050 1.02474 0.90704 1.25892 0.94603 0.93712 1.00433 1.69781 1.02591 1.35192 1.35908 0.86257 0.78935 0.79656 0.81100 1.19082 1.20430 1.19161 1.20687 1.04036 0.99240 0.98515 1.20073 0.97688 0.99127 0.96589 0.91654 0.93062 0.92073 0.84635 0.85001 0.90667 0.90137 0.89388 0.89661 0.77331 0.87518 0.85176 0.91029 0.88576 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.49 37.16 0.35 -0.94 16 2 C 0.09 0.80 3.43 -67.71 -0.23 0.57 16 3 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 4 N -0.85 -7.15 9.25 -4.66 -0.04 -7.19 16 5 C -0.10 -1.20 4.18 -26.73 -0.11 -1.31 16 6 C -0.14 -1.62 5.47 -27.88 -0.15 -1.77 16 7 C 0.50 8.67 7.66 -10.98 -0.08 8.59 16 8 O -0.53 -11.73 13.42 5.56 0.07 -11.66 16 9 N -0.66 -11.48 5.30 -9.74 -0.05 -11.53 16 10 C 0.00 0.11 6.30 -83.57 -0.53 -0.42 16 11 C -0.09 -2.38 8.61 -39.79 -0.34 -2.73 16 12 C -0.14 -3.93 8.61 -39.26 -0.34 -4.27 16 13 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 14 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 15 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -21.86 10.60 55.55 0.59 -21.27 16 18 Si 0.92 19.34 29.56 -169.99 -5.03 14.32 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.20 -5.01 9.74 -39.26 -0.38 -5.40 16 23 C -0.11 -2.53 9.90 -39.79 -0.39 -2.92 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.34 2.54 7.25 -39.29 -0.28 2.25 16 28 H 0.34 2.24 9.04 -39.29 -0.36 1.89 16 29 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.09 0.83 6.68 -51.93 -0.35 0.48 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.39 5.22 8.82 -40.82 -0.36 4.86 16 34 H 0.11 2.73 6.25 -52.49 -0.33 2.40 16 35 H 0.13 3.72 6.13 -52.48 -0.32 3.40 16 36 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -31.37 316.17 -8.28 -39.65 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.34 Total: 12.59 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.24 Total: -19.67 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.49 Total: -39.99 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.37 -8.28 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070315717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.773 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds