Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 N 1.46907 * 109.47204 * 119.99658 * 2 1 3 5 5 C 1.52998 * 109.47480 * 239.99615 * 2 1 3 6 6 C 1.53000 * 109.47256 * 174.99703 * 5 2 1 7 7 C 1.50707 * 109.47110 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99780 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00067 * 180.02562 * 7 6 5 10 10 C 1.39231 * 120.00058 * 184.02914 * 9 7 6 11 11 C 1.39481 * 119.83476 * 324.50714 * 10 9 7 12 12 C 1.36377 * 120.16641 * 179.71635 * 11 10 9 13 13 C 1.40867 * 119.82903 * 0.56994 * 12 11 10 14 14 C 1.41151 * 120.16256 * 179.67519 * 13 12 11 15 15 H 1.07997 * 120.00255 * 214.80128 * 14 13 12 16 16 C 1.39907 * 119.99951 * 34.81062 * 14 13 12 17 17 N 1.30871 * 119.99836 * 355.55275 * 16 14 13 18 18 Si 1.86802 * 120.00195 * 175.55822 * 16 14 13 19 19 H 1.48505 * 109.47294 * 59.99282 * 18 16 14 20 20 H 1.48490 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46924 * 299.99940 * 18 16 14 22 22 C 1.40869 * 119.67447 * 359.70168 * 13 12 11 23 23 C 1.36380 * 119.82439 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.46818 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47254 * 299.99772 * 1 2 3 26 26 H 1.08994 * 109.47100 * 60.00383 * 1 2 3 27 27 H 1.00905 * 111.00019 * 176.05030 * 4 2 1 28 28 H 1.00900 * 110.99559 * 299.99999 * 4 2 1 29 29 H 1.09002 * 109.47117 * 54.99950 * 5 2 1 30 30 H 1.09000 * 109.47485 * 295.00024 * 5 2 1 31 31 H 1.09000 * 109.47336 * 60.00273 * 6 5 2 32 32 H 1.08994 * 109.47438 * 299.99895 * 6 5 2 33 33 H 0.97006 * 119.99600 * 4.31232 * 9 7 6 34 34 H 1.07998 * 119.91658 * 359.97438 * 11 10 9 35 35 H 1.08003 * 120.08144 * 180.25151 * 12 11 10 36 36 H 0.97000 * 119.99842 * 180.02562 * 17 16 14 37 37 H 1.07994 * 120.08952 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.91133 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0401 -0.7213 -1.2491 6 6 3.5649 -0.6133 -1.3136 7 6 4.0672 -1.3232 -2.5444 8 8 3.2828 -1.8621 -3.2962 9 7 5.3882 -1.3593 -2.8096 10 6 5.8459 -1.9418 -3.9885 11 6 5.1945 -3.0602 -4.5083 12 6 5.6335 -3.6326 -5.6657 13 6 6.7552 -3.0988 -6.3299 14 6 7.2198 -3.6898 -7.5245 15 1 8.2778 -3.7127 -7.7398 16 6 6.3096 -4.2459 -8.4299 17 7 5.0366 -4.2964 -8.1302 18 14 6.9112 -4.9164 -10.0663 19 1 7.8892 -6.0076 -9.8248 20 1 5.7587 -5.4470 -10.8377 21 1 7.5644 -3.8280 -10.8371 22 6 7.4113 -1.9724 -5.7957 23 6 6.9565 -1.4069 -4.6410 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 3.0263 -0.7625 1.1910 28 1 1.6961 -0.2348 2.0385 29 1 1.6055 -0.2619 -2.1369 30 1 1.7518 -1.7716 -1.2055 31 1 3.9996 -1.0727 -0.4259 32 1 3.8532 0.4369 -1.3573 33 1 6.0202 -0.9831 -2.1771 34 1 4.3377 -3.4714 -3.9952 35 1 5.1256 -4.4962 -6.0691 36 1 4.4056 -4.6823 -8.7578 37 1 8.2721 -1.5579 -6.2991 38 1 7.4587 -0.5436 -4.2300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070315717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -52.760675 kcal Electronic energy + Delta-G solvation = -18854.316828 eV Core-core repulsion = 15887.666892 eV Total energy + Delta-G solvation = -2966.649935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22586 -39.18384 -37.68062 -36.14298 -34.68409 -32.54332 -31.40117 -30.73588 -29.93914 -27.14599 -25.30174 -23.23527 -22.64738 -21.19581 -20.91078 -19.23017 -18.45513 -17.78552 -17.17541 -16.98711 -16.36633 -16.06740 -15.75565 -15.14656 -14.96391 -14.60649 -14.43967 -14.00644 -13.92935 -13.54532 -13.31944 -13.05983 -12.82895 -12.73402 -12.67274 -12.31248 -12.29237 -11.95749 -11.83696 -11.74542 -11.70978 -11.18764 -10.72841 -10.44114 -9.52875 -9.45492 -8.74307 -8.49455 -6.33051 0.82146 1.12573 1.38243 1.46506 1.51485 1.84075 2.23297 2.39676 2.82064 3.64911 3.67659 3.77531 3.89593 4.15752 4.25262 4.43335 4.47911 4.48232 4.57861 4.74461 4.90246 5.00674 5.04036 5.12451 5.16955 5.20335 5.27431 5.34834 5.41148 5.45127 5.71063 5.87954 6.08875 6.15307 6.33170 6.35749 6.69202 6.70659 6.76324 6.95861 7.02678 7.46747 8.43250 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040732 B = 0.003583 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.257667 B = 7813.549334 C = 8320.886396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.094 3.906 3 H 0.053 0.947 4 N -0.856 5.856 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.491 3.509 8 O -0.581 6.581 9 N -0.646 5.646 10 C 0.019 3.981 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.021 3.979 17 N -0.848 5.848 18 Si 0.991 3.009 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.210 4.210 23 C -0.108 4.108 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.347 0.653 28 H 0.350 0.650 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.420 0.580 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.282 0.718 37 H 0.113 0.887 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 9.843 15.328 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 H 0.071 0.929 4 N -0.390 5.390 5 C -0.137 4.137 6 C -0.162 4.162 7 C 0.281 3.719 8 O -0.461 6.461 9 N -0.292 5.292 10 C -0.075 4.075 11 C -0.131 4.131 12 C -0.189 4.189 13 C 0.062 3.938 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.476 5.476 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.230 4.230 23 C -0.128 4.128 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.257 0.743 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.271 8.804 14.475 17.255 hybrid contribution 0.636 0.373 -0.593 0.946 sum -2.636 9.178 13.881 16.849 Atomic orbital electron populations 1.21813 0.94461 1.01953 1.02236 1.21254 0.95623 0.95281 0.89536 0.92891 1.58728 1.16936 1.59052 1.04305 1.21378 0.93553 1.01137 0.97609 1.21690 0.97384 1.02564 0.94597 1.21725 0.81738 0.80147 0.88328 1.90711 1.56563 1.47172 1.51644 1.42980 1.07699 1.58406 1.20080 1.17399 1.00257 0.97445 0.92349 1.20667 0.99213 0.95803 0.97413 1.21172 1.00868 1.01906 0.94984 1.18058 0.92109 0.91254 0.92337 1.19748 0.95077 1.34756 1.03288 0.90165 1.26869 0.94453 0.93495 1.04173 1.69913 1.03933 1.36395 1.37356 0.85112 0.78523 0.79137 0.76011 1.18129 1.19837 1.18307 1.20977 1.04228 0.98438 0.99386 1.20456 0.97057 0.99813 0.95447 0.93290 0.91318 0.92114 0.83821 0.83577 0.92467 0.93114 0.86256 0.86110 0.74252 0.88787 0.87877 0.90785 0.86883 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.49 71.98 0.68 -1.70 16 2 C 0.09 1.51 3.43 44.91 0.15 1.66 16 3 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 4 N -0.86 -11.92 9.25 -168.67 -1.56 -13.48 16 5 C -0.10 -2.25 4.18 30.59 0.13 -2.12 16 6 C -0.12 -2.45 5.47 29.85 0.16 -2.29 16 7 C 0.49 16.41 7.66 87.66 0.67 17.08 16 8 O -0.58 -26.44 13.42 -3.03 -0.04 -26.48 16 9 N -0.65 -20.94 5.30 -303.11 -1.61 -22.55 16 10 C 0.02 0.84 6.30 38.57 0.24 1.08 16 11 C -0.11 -5.82 8.61 22.14 0.19 -5.63 16 12 C -0.17 -9.74 8.61 22.48 0.19 -9.55 16 13 C 0.06 3.63 5.55 -21.28 -0.12 3.51 16 14 C -0.50 -27.73 9.02 23.39 0.21 -27.51 16 15 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 16 C 0.02 1.14 5.42 85.24 0.46 1.60 16 17 N -0.85 -48.18 10.60 21.82 0.23 -47.95 16 18 Si 0.99 40.35 29.56 68.60 2.03 42.38 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 C -0.21 -10.16 9.74 22.48 0.22 -9.94 16 23 C -0.11 -4.50 9.90 22.14 0.22 -4.29 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.35 3.88 7.25 -89.69 -0.65 3.23 16 28 H 0.35 3.52 9.04 -89.69 -0.81 2.71 16 29 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 31 H 0.12 1.72 6.68 -2.39 -0.02 1.70 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.42 9.29 8.82 -92.70 -0.82 8.48 16 34 H 0.09 5.09 6.25 -2.91 -0.02 5.07 16 35 H 0.10 6.38 6.13 -2.91 -0.02 6.36 16 36 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -73.18 316.17 1.29 -71.90 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -1.18 Total: 34.27 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 3.42 Total: -38.10 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.94 Total: -83.97 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -73.18 1.29 -71.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070315717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.134 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds