Wall clock time and date at job start Mon Mar 30 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47491 * 2 1 4 4 C 1.50700 * 109.47206 * 120.00278 * 2 1 3 5 5 H 1.08003 * 120.00261 * 119.99538 * 4 2 1 6 6 C 1.37880 * 119.99852 * 299.99869 * 4 2 1 7 7 N 1.31513 * 119.99694 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00086 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47021 * 90.00015 * 8 6 4 10 10 H 1.48497 * 109.47531 * 210.00162 * 8 6 4 11 11 H 1.48504 * 109.47082 * 330.00278 * 8 6 4 12 12 N 1.46509 * 109.46741 * 239.99951 * 2 1 3 13 13 C 1.34776 * 119.99606 * 85.27570 * 12 2 1 14 14 O 1.21550 * 120.00445 * 359.72396 * 13 12 2 15 15 C 1.47846 * 119.99597 * 179.72180 * 13 12 2 16 16 C 1.39596 * 120.14576 * 354.51954 * 15 13 12 17 17 C 1.37933 * 119.85116 * 179.79077 * 16 15 13 18 18 C 1.38382 * 120.14609 * 0.48560 * 17 16 15 19 19 C 1.38336 * 120.29314 * 359.74313 * 18 17 16 20 20 C 1.37978 * 120.14212 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.07097 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47036 * 101.85383 * 21 20 19 23 23 N 1.46903 * 109.47375 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47175 * 59.99967 * 1 2 3 25 25 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46655 * 299.99651 * 1 2 3 27 27 H 0.97002 * 119.99756 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99874 * 265.00066 * 12 2 1 29 29 H 1.07996 * 120.07126 * 359.97438 * 16 15 13 30 30 H 1.08005 * 119.92787 * 180.25432 * 17 16 15 31 31 H 1.08006 * 119.85175 * 179.76859 * 18 17 16 32 32 H 1.07998 * 119.92675 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.46961 * 221.85359 * 21 20 19 34 34 H 1.08995 * 109.46862 * 341.85604 * 21 20 19 35 35 H 1.09000 * 109.47226 * 299.99813 * 22 21 20 36 36 H 1.09000 * 109.47388 * 59.99699 * 22 21 20 37 37 H 1.00898 * 110.99957 * 180.02562 * 23 22 21 38 38 H 1.00907 * 110.99515 * 303.95526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8744 2.6993 10 1 0.9773 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1963 13 6 2.1522 -0.0169 -2.3558 14 8 1.8632 1.1624 -2.4104 15 6 2.6508 -0.7124 -3.5615 16 6 3.0914 -2.0343 -3.4764 17 6 3.5513 -2.6787 -4.6059 18 6 3.5859 -2.0145 -5.8194 19 6 3.1552 -0.7030 -5.9096 20 6 2.6884 -0.0484 -4.7883 21 6 2.2201 1.3806 -4.8883 22 6 0.6907 1.4153 -4.9153 23 7 0.2342 2.8082 -5.0134 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9041 -0.5276 4.4375 28 1 2.2489 -1.6318 -1.1527 29 1 3.0694 -2.5521 -2.5289 30 1 3.8886 -3.7028 -4.5423 31 1 3.9504 -2.5225 -6.7001 32 1 3.1844 -0.1905 -6.8598 33 1 2.5811 1.9423 -4.0268 34 1 2.6099 1.8274 -5.8029 35 1 0.3297 0.8536 -5.7768 36 1 0.3009 0.9684 -4.0008 37 1 -0.7734 2.8579 -5.0325 38 1 0.6093 3.3655 -4.2605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070542222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:38 Heat of formation + Delta-G solvation = -12.399651 kcal Electronic energy + Delta-G solvation = -19802.461922 eV Core-core repulsion = 16837.562172 eV Total energy + Delta-G solvation = -2964.899750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17128 -38.05390 -35.66082 -34.74290 -32.59062 -31.78661 -31.37344 -29.47688 -27.40126 -25.24963 -23.87106 -22.64323 -21.59118 -20.51462 -19.71932 -17.87704 -16.45290 -16.07867 -15.79449 -15.31116 -15.11414 -14.72471 -14.63572 -14.10967 -13.93151 -13.62105 -13.04293 -12.95262 -12.67378 -12.49652 -12.25587 -11.79939 -11.72426 -11.48775 -11.37817 -11.06735 -10.89277 -10.78795 -10.22659 -9.71683 -9.28436 -9.05177 -8.93946 -8.81921 -8.72905 -8.51681 -8.15549 -6.24697 -4.27525 0.98269 1.35834 3.19334 3.22726 3.32127 3.35520 3.88227 4.02087 4.27737 4.60524 4.83792 4.91054 5.01960 5.10089 5.19346 5.32347 5.43199 5.55049 5.57551 5.74060 5.89485 6.02875 6.15656 6.25788 6.30734 6.33125 6.39394 6.43135 6.50644 6.67964 6.80910 6.91335 7.15357 7.23203 7.25348 7.46679 7.55837 8.10734 8.47169 8.71566 8.86814 9.35757 10.87506 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.006005 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.443852 B = 4661.667008 C = 5709.134331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.545 3.455 14 O -0.546 6.546 15 C -0.127 4.127 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.024 4.024 21 C -0.087 4.087 22 C 0.077 3.923 23 N -0.851 5.851 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.268 0.732 28 H 0.394 0.606 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.336 0.664 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -1.216 -17.162 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.343 5.343 13 C 0.331 3.669 14 O -0.427 6.427 15 C -0.131 4.131 16 C -0.103 4.103 17 C -0.152 4.152 18 C -0.118 4.118 19 C -0.148 4.148 20 C -0.026 4.026 21 C -0.124 4.124 22 C -0.053 4.053 23 N -0.380 5.380 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.228 0.772 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.147 0.853 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.049 -0.382 -17.632 17.637 hybrid contribution -0.886 -0.136 1.268 1.552 sum -0.837 -0.519 -16.365 16.395 Atomic orbital electron populations 1.22444 0.99283 1.00862 0.99219 1.19115 0.90100 0.94705 0.82664 0.93237 1.21032 1.33360 1.14490 0.88539 0.90217 1.24829 0.95478 0.96701 0.95505 1.69867 1.44804 1.40089 0.98062 0.86863 0.80485 0.83579 0.77463 1.20335 1.22108 1.18706 1.46183 1.64499 1.13774 1.09794 1.18249 0.78600 0.86728 0.83275 1.90629 1.51671 1.15545 1.84859 1.20081 1.03830 0.94814 0.94329 1.21411 0.96297 0.93557 0.99046 1.21070 1.01251 1.00229 0.92666 1.21279 0.98196 0.94639 0.97706 1.21045 1.00712 0.94996 0.98030 1.19971 0.94973 0.96061 0.91604 1.20782 0.95708 0.92083 1.03814 1.21582 0.94519 0.89510 0.99723 1.58832 1.14183 1.11259 1.53706 0.94680 0.92830 0.93415 0.92244 0.77152 0.85312 0.85654 0.85919 0.85665 0.87622 0.91605 0.92454 0.94388 0.85303 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.24 5.59 2.15 -69.08 -0.15 5.44 16 3 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 4 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 5 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 8 Si 0.89 21.57 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.69 -13.78 5.02 -55.87 -0.28 -14.07 16 13 C 0.54 10.30 7.30 -12.33 -0.09 10.21 16 14 O -0.55 -11.37 11.47 5.32 0.06 -11.31 16 15 C -0.13 -1.99 5.86 -104.97 -0.62 -2.60 16 16 C -0.08 -1.12 9.53 -39.19 -0.37 -1.49 16 17 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 18 C -0.10 -1.04 10.04 -39.49 -0.40 -1.43 16 19 C -0.13 -1.51 9.66 -39.64 -0.38 -1.89 16 20 C -0.02 -0.35 5.18 -104.22 -0.54 -0.89 16 21 C -0.09 -1.25 4.88 -27.88 -0.14 -1.38 16 22 C 0.08 1.10 6.28 -3.82 -0.02 1.08 16 23 N -0.85 -11.11 9.62 -10.37 -0.10 -11.21 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.39 6.97 6.60 -40.82 -0.27 6.70 16 29 H 0.13 1.57 6.44 -52.49 -0.34 1.23 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.13 1.19 8.02 -52.49 -0.42 0.77 16 33 H 0.11 1.78 5.91 -51.93 -0.31 1.48 16 34 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.63 6.45 -51.93 -0.34 0.30 16 37 H 0.34 3.80 9.08 -39.29 -0.36 3.45 16 38 H 0.34 4.65 8.99 -39.29 -0.35 4.30 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -30.26 305.82 -7.29 -37.55 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.19 Total: -10.61 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.39 Total: -50.72 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.06 Total: -11.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.26 -7.29 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070542222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.149 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds