Wall clock time and date at job start Mon Mar 30 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47491 * 2 1 4 4 C 1.50700 * 109.47206 * 120.00278 * 2 1 3 5 5 H 1.08003 * 120.00261 * 119.99538 * 4 2 1 6 6 C 1.37880 * 119.99852 * 299.99869 * 4 2 1 7 7 N 1.31513 * 119.99694 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00086 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47021 * 90.00015 * 8 6 4 10 10 H 1.48497 * 109.47531 * 210.00162 * 8 6 4 11 11 H 1.48504 * 109.47082 * 330.00278 * 8 6 4 12 12 N 1.46509 * 109.46741 * 239.99951 * 2 1 3 13 13 C 1.34776 * 119.99606 * 85.27570 * 12 2 1 14 14 O 1.21550 * 120.00445 * 359.72396 * 13 12 2 15 15 C 1.47846 * 119.99597 * 179.72180 * 13 12 2 16 16 C 1.39596 * 120.14576 * 354.51954 * 15 13 12 17 17 C 1.37933 * 119.85116 * 179.79077 * 16 15 13 18 18 C 1.38382 * 120.14609 * 0.48560 * 17 16 15 19 19 C 1.38336 * 120.29314 * 359.74313 * 18 17 16 20 20 C 1.37978 * 120.14212 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.07097 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47036 * 101.85383 * 21 20 19 23 23 N 1.46903 * 109.47375 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47175 * 59.99967 * 1 2 3 25 25 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46655 * 299.99651 * 1 2 3 27 27 H 0.97002 * 119.99756 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99874 * 265.00066 * 12 2 1 29 29 H 1.07996 * 120.07126 * 359.97438 * 16 15 13 30 30 H 1.08005 * 119.92787 * 180.25432 * 17 16 15 31 31 H 1.08006 * 119.85175 * 179.76859 * 18 17 16 32 32 H 1.07998 * 119.92675 * 180.02562 * 19 18 17 33 33 H 1.09000 * 109.46961 * 221.85359 * 21 20 19 34 34 H 1.08995 * 109.46862 * 341.85604 * 21 20 19 35 35 H 1.09000 * 109.47226 * 299.99813 * 22 21 20 36 36 H 1.09000 * 109.47388 * 59.99699 * 22 21 20 37 37 H 1.00898 * 110.99957 * 180.02562 * 23 22 21 38 38 H 1.00907 * 110.99515 * 303.95526 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8744 2.6993 10 1 0.9773 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1963 13 6 2.1522 -0.0169 -2.3558 14 8 1.8632 1.1624 -2.4104 15 6 2.6508 -0.7124 -3.5615 16 6 3.0914 -2.0343 -3.4764 17 6 3.5513 -2.6787 -4.6059 18 6 3.5859 -2.0145 -5.8194 19 6 3.1552 -0.7030 -5.9096 20 6 2.6884 -0.0484 -4.7883 21 6 2.2201 1.3806 -4.8883 22 6 0.6907 1.4153 -4.9153 23 7 0.2342 2.8082 -5.0134 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9041 -0.5276 4.4375 28 1 2.2489 -1.6318 -1.1527 29 1 3.0694 -2.5521 -2.5289 30 1 3.8886 -3.7028 -4.5423 31 1 3.9504 -2.5225 -6.7001 32 1 3.1844 -0.1905 -6.8598 33 1 2.5811 1.9423 -4.0268 34 1 2.6099 1.8274 -5.8029 35 1 0.3297 0.8536 -5.7768 36 1 0.3009 0.9684 -4.0008 37 1 -0.7734 2.8579 -5.0325 38 1 0.6093 3.3655 -4.2605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070542222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:38 Heat of formation + Delta-G solvation = -34.614387 kcal Electronic energy + Delta-G solvation = -19803.425225 eV Core-core repulsion = 16837.562172 eV Total energy + Delta-G solvation = -2965.863053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41865 -39.32819 -37.09506 -36.15893 -34.46480 -32.82820 -32.75930 -30.96838 -28.46625 -27.26408 -25.11235 -23.66962 -23.07526 -21.70415 -21.30434 -19.39935 -18.16570 -17.45744 -17.11338 -16.56519 -16.45703 -15.97801 -15.90112 -15.50186 -15.23549 -14.93475 -14.80538 -14.33326 -14.16673 -13.76764 -13.63168 -13.43707 -13.21156 -12.82173 -12.69580 -12.47886 -12.21882 -12.14203 -11.87453 -11.61703 -11.31654 -10.90114 -10.48597 -10.05845 -9.83874 -9.63402 -9.59579 -8.40891 -6.47138 -0.06272 0.42334 1.24805 1.33133 1.42342 1.98524 2.23403 2.40476 2.90042 2.96153 3.58157 3.79306 3.90488 4.03456 4.22507 4.32869 4.38009 4.40282 4.48708 4.54808 4.58846 4.65974 4.70205 4.88958 4.95983 5.03596 5.11348 5.22116 5.30325 5.40567 5.42009 5.52814 5.61329 5.67788 6.00020 6.11574 6.15833 6.53238 6.54172 6.82954 7.15926 7.39310 8.74445 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.006005 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.443852 B = 4661.667008 C = 5709.134331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.245 3.755 3 H 0.025 0.975 4 C -0.535 4.535 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.542 3.458 14 O -0.571 6.571 15 C -0.154 4.154 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.038 4.038 21 C -0.081 4.081 22 C 0.084 3.916 23 N -0.848 5.848 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.271 0.729 28 H 0.403 0.597 29 H 0.131 0.869 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.009 0.991 37 H 0.345 0.655 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -1.843 -19.878 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.140 3.860 3 H 0.043 0.957 4 C -0.573 4.573 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.331 3.669 14 O -0.453 6.453 15 C -0.158 4.158 16 C -0.112 4.112 17 C -0.148 4.148 18 C -0.103 4.103 19 C -0.147 4.147 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.047 4.047 23 N -0.377 5.377 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.149 0.851 30 H 0.173 0.827 31 H 0.180 0.820 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.158 0.842 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.108 -1.026 -20.378 20.404 hybrid contribution -0.742 -0.017 1.995 2.128 sum -0.850 -1.042 -18.383 18.432 Atomic orbital electron populations 1.22323 0.97819 1.01542 0.99372 1.18752 0.91136 0.93182 0.82925 0.95748 1.21249 1.32480 1.13640 0.89981 0.92667 1.25557 0.96812 0.99365 0.95278 1.69974 1.46575 1.41919 0.98674 0.85985 0.79726 0.80287 0.77263 1.18531 1.21878 1.18678 1.46017 1.65285 1.14181 1.09289 1.18830 0.77742 0.86558 0.83802 1.90616 1.52590 1.16711 1.85357 1.19879 1.06577 0.96029 0.93267 1.21553 0.96524 0.92760 1.00349 1.21452 0.99905 1.01489 0.91976 1.21759 0.95887 0.93974 0.98702 1.21352 0.99663 0.95670 0.97977 1.20070 0.95868 0.95960 0.92075 1.20667 0.95671 0.92406 1.03053 1.21499 0.94547 0.89918 0.98764 1.58855 1.15005 1.10534 1.53286 0.93679 0.91884 0.93964 0.91992 0.76122 0.85144 0.82653 0.82047 0.83143 0.90699 0.90051 0.91120 0.97305 0.84232 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.67 8.97 71.98 0.65 -6.02 16 2 C 0.24 11.72 2.15 44.24 0.10 11.81 16 3 H 0.02 1.30 6.63 -2.39 -0.02 1.29 16 4 C -0.54 -29.39 9.31 25.60 0.24 -29.15 16 5 H 0.06 3.23 7.98 -2.91 -0.02 3.20 16 6 C 0.03 1.68 5.45 84.66 0.46 2.15 16 7 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 8 Si 0.94 44.73 24.37 68.60 1.67 46.40 16 9 H -0.26 -11.59 6.87 99.48 0.68 -10.91 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 11 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 12 N -0.70 -28.35 5.02 -448.97 -2.25 -30.60 16 13 C 0.54 20.93 7.30 86.79 0.63 21.57 16 14 O -0.57 -24.52 11.47 -3.87 -0.04 -24.57 16 15 C -0.15 -4.75 5.86 -20.09 -0.12 -4.87 16 16 C -0.09 -2.33 9.53 22.53 0.21 -2.11 16 17 C -0.13 -2.40 10.03 22.23 0.22 -2.18 16 18 C -0.09 -1.38 10.04 22.33 0.22 -1.15 16 19 C -0.13 -2.54 9.66 22.23 0.21 -2.32 16 20 C -0.04 -1.03 5.18 -19.61 -0.10 -1.13 16 21 C -0.08 -2.28 4.88 29.85 0.15 -2.13 16 22 C 0.08 2.34 6.28 86.30 0.54 2.88 16 23 N -0.85 -21.60 9.62 -186.72 -1.80 -23.40 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.04 1.88 3.27 -2.38 -0.01 1.87 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.40 14.61 6.60 -92.71 -0.61 14.00 16 29 H 0.13 3.09 6.44 -2.91 -0.02 3.08 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.15 2.18 8.02 -2.91 -0.02 2.16 16 33 H 0.07 2.60 5.91 -2.39 -0.01 2.58 16 34 H 0.08 1.98 7.98 -2.39 -0.02 1.96 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.01 0.29 6.45 -2.39 -0.02 0.28 16 37 H 0.35 7.53 9.08 -89.70 -0.81 6.72 16 38 H 0.34 9.23 8.99 -89.69 -0.81 8.43 16 Total: -1.00 -66.71 305.82 0.09 -66.62 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -1.21 Total: 33.86 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 3.42 Total: -12.66 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.75 Total: -109.66 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.04 Total: -24.57 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.40 kcal Total: -66.71 0.09 -66.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070542222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds