Wall clock time and date at job start Mon Mar 30 2020 04:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47008 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00109 * 2 1 3 5 5 H 1.08003 * 119.99495 * 119.99784 * 4 2 1 6 6 C 1.37872 * 120.00343 * 300.00281 * 4 2 1 7 7 N 1.31520 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00276 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46858 * 89.99558 * 8 6 4 10 10 H 1.48497 * 109.46895 * 209.99622 * 8 6 4 11 11 H 1.48503 * 109.46673 * 329.99359 * 8 6 4 12 12 N 1.46501 * 109.46842 * 240.00124 * 2 1 3 13 13 C 1.34779 * 120.00008 * 85.00054 * 12 2 1 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 2 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 N 1.46899 * 109.47059 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 23 23 C 1.37958 * 120.14423 * 359.75425 * 22 18 17 24 24 H 1.09003 * 109.47346 * 59.99829 * 1 2 3 25 25 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47335 * 299.99774 * 1 2 3 27 27 H 0.96999 * 120.00090 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00391 * 265.00330 * 12 2 1 29 29 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 30 30 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 31 31 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 32 32 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 33 33 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 34 34 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 35 35 H 1.00904 * 110.99733 * 56.04992 * 21 20 19 36 36 H 1.00901 * 110.99922 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.93372 * 179.76996 * 22 18 17 38 38 H 1.07997 * 120.07488 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4117 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8575 1.1610 -2.4118 15 6 2.6402 -0.7150 -3.5643 16 6 2.7752 -0.0215 -4.7680 17 6 3.2306 -0.6790 -5.8920 18 6 3.5632 -2.0203 -5.8253 19 6 4.0655 -2.7308 -7.0559 20 6 2.8807 -3.3190 -7.8246 21 7 3.3703 -4.0109 -9.0244 22 6 3.4318 -2.7137 -4.6353 23 6 2.9725 -2.0694 -3.5052 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1616 3.4844 28 1 2.2489 -1.6317 -1.1528 29 1 2.5190 1.0264 -4.8205 30 1 3.3312 -0.1446 -6.8251 31 1 4.5965 -2.0231 -7.6926 32 1 4.7421 -3.5331 -6.7614 33 1 2.3497 -4.0266 -7.1878 34 1 2.2042 -2.5166 -8.1189 35 1 4.0490 -4.7173 -8.7827 36 1 2.6061 -4.4088 -9.5495 37 1 3.6896 -3.7616 -4.5907 38 1 2.8700 -2.6118 -2.5769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070542224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:42 Heat of formation + Delta-G solvation = -27.867372 kcal Electronic energy + Delta-G solvation = -18803.351390 eV Core-core repulsion = 15837.780910 eV Total energy + Delta-G solvation = -2965.570480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84436 -38.23259 -35.68145 -34.81290 -32.64333 -31.95745 -30.90344 -29.10857 -27.52256 -25.26592 -23.64586 -22.60883 -21.83592 -20.71224 -19.41894 -17.95446 -16.48012 -15.98027 -15.90232 -15.35559 -14.94910 -14.57912 -14.52952 -14.21565 -13.86593 -13.74239 -13.43190 -12.84368 -12.77648 -12.39256 -11.92113 -11.67858 -11.51911 -11.39897 -11.08655 -10.98766 -10.91948 -10.74819 -10.31774 -10.24336 -9.14527 -9.11735 -9.05530 -8.93782 -8.68566 -8.55655 -7.91240 -6.13188 -4.22705 1.00257 1.42205 3.24018 3.27984 3.30617 3.32422 4.04943 4.11603 4.21719 4.37208 4.64309 4.85348 4.91055 4.97466 4.99968 5.19067 5.28349 5.35740 5.43014 5.50999 5.75535 5.78169 5.93141 6.03327 6.36760 6.51537 6.53411 6.71037 6.82448 6.92689 6.96854 7.02552 7.14300 7.43843 7.55408 7.68639 7.90693 8.13807 8.64077 8.76569 9.09121 9.44785 10.92896 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003627 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.942827 B = 7717.075244 C = 8165.530187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.702 5.702 13 C 0.540 3.460 14 O -0.552 6.552 15 C -0.122 4.122 16 C -0.063 4.063 17 C -0.125 4.125 18 C -0.072 4.072 19 C -0.079 4.079 20 C 0.065 3.935 21 N -0.854 5.854 22 C -0.126 4.126 23 C -0.086 4.086 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.342 0.658 37 H 0.123 0.877 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -10.018 -17.500 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.432 6.432 15 C -0.126 4.126 16 C -0.082 4.082 17 C -0.143 4.143 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.066 4.066 21 N -0.383 5.383 22 C -0.144 4.144 23 C -0.105 4.105 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.371 -8.328 -17.549 19.910 hybrid contribution -0.031 -1.799 1.414 2.289 sum 4.339 -10.126 -16.135 19.537 Atomic orbital electron populations 1.22081 0.98349 0.99162 1.00987 1.18780 0.91110 0.94056 0.79845 0.93223 1.21209 1.32494 1.13275 0.90321 0.92080 1.24891 0.94774 0.94975 0.99063 1.69906 1.35803 1.22434 1.23909 0.86435 0.78622 0.79817 0.82148 1.20530 1.21043 1.19841 1.46499 1.64473 1.13536 1.10423 1.18269 0.78923 0.86812 0.83430 1.90719 1.51633 1.15679 1.85141 1.20345 1.02637 0.94345 0.95230 1.21299 0.95299 1.00506 0.91092 1.20994 1.00743 0.94089 0.98475 1.19918 0.98437 0.94117 0.94805 1.20578 0.97403 0.99983 0.93693 1.21783 0.96438 0.98009 0.90337 1.58737 1.19454 1.36290 1.23816 1.20923 1.01336 0.99758 0.92355 1.21383 0.96742 0.93708 0.98667 0.96580 0.95447 0.89051 0.92540 0.77876 0.84703 0.85650 0.90064 0.91122 0.95194 0.90696 0.84832 0.84519 0.85917 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.70 -15.14 5.02 -55.88 -0.28 -15.42 16 13 C 0.54 11.46 7.74 -12.33 -0.10 11.36 16 14 O -0.55 -13.73 16.01 5.32 0.09 -13.65 16 15 C -0.12 -2.04 5.87 -104.97 -0.62 -2.65 16 16 C -0.06 -0.94 9.60 -39.19 -0.38 -1.31 16 17 C -0.12 -1.48 9.68 -39.64 -0.38 -1.87 16 18 C -0.07 -0.78 5.14 -104.53 -0.54 -1.31 16 19 C -0.08 -0.66 5.60 -27.88 -0.16 -0.81 16 20 C 0.06 0.51 6.77 -3.82 -0.03 0.48 16 21 N -0.85 -5.74 9.62 -10.37 -0.10 -5.84 16 22 C -0.13 -1.42 9.68 -39.64 -0.38 -1.81 16 23 C -0.09 -1.18 9.54 -39.18 -0.37 -1.55 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 7.21 6.57 -40.82 -0.27 6.94 16 29 H 0.14 2.05 7.65 -52.49 -0.40 1.65 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.34 1.83 8.99 -39.29 -0.35 1.48 16 36 H 0.34 1.82 9.08 -39.29 -0.36 1.46 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -31.34 321.54 -8.36 -39.70 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.34 Total: 8.18 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.18 Total: -9.08 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.25 Total: -45.65 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.34 -8.36 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070542224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.834 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds