Wall clock time and date at job start Mon Mar 30 2020 04:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47008 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00109 * 2 1 3 5 5 H 1.08003 * 119.99495 * 119.99784 * 4 2 1 6 6 C 1.37872 * 120.00343 * 300.00281 * 4 2 1 7 7 N 1.31520 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00276 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46858 * 89.99558 * 8 6 4 10 10 H 1.48497 * 109.46895 * 209.99622 * 8 6 4 11 11 H 1.48503 * 109.46673 * 329.99359 * 8 6 4 12 12 N 1.46501 * 109.46842 * 240.00124 * 2 1 3 13 13 C 1.34779 * 120.00008 * 85.00054 * 12 2 1 14 14 O 1.21550 * 119.99966 * 359.97438 * 13 12 2 15 15 C 1.47848 * 120.00150 * 179.97438 * 13 12 2 16 16 C 1.39575 * 120.14487 * 180.02562 * 15 13 12 17 17 C 1.37955 * 119.85263 * 180.27853 * 16 15 13 18 18 C 1.38361 * 120.14138 * 359.49245 * 17 16 15 19 19 C 1.50708 * 119.85196 * 180.25817 * 18 17 16 20 20 C 1.52999 * 109.47076 * 270.25154 * 19 18 17 21 21 N 1.46899 * 109.47059 * 179.97438 * 20 19 18 22 22 C 1.38356 * 120.29644 * 0.50649 * 18 17 16 23 23 C 1.37958 * 120.14423 * 359.75425 * 22 18 17 24 24 H 1.09003 * 109.47346 * 59.99829 * 1 2 3 25 25 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47335 * 299.99774 * 1 2 3 27 27 H 0.96999 * 120.00090 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00391 * 265.00330 * 12 2 1 29 29 H 1.08002 * 120.07104 * 359.97438 * 16 15 13 30 30 H 1.07998 * 119.92975 * 179.72529 * 17 16 15 31 31 H 1.08997 * 109.46821 * 30.25241 * 19 18 17 32 32 H 1.09000 * 109.46932 * 150.24699 * 19 18 17 33 33 H 1.09004 * 109.47072 * 300.00014 * 20 19 18 34 34 H 1.08994 * 109.47029 * 59.99595 * 20 19 18 35 35 H 1.00904 * 110.99733 * 56.04992 * 21 20 19 36 36 H 1.00901 * 110.99922 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.93372 * 179.76996 * 22 18 17 38 38 H 1.07997 * 120.07488 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4117 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8575 1.1610 -2.4118 15 6 2.6402 -0.7150 -3.5643 16 6 2.7752 -0.0215 -4.7680 17 6 3.2306 -0.6790 -5.8920 18 6 3.5632 -2.0203 -5.8253 19 6 4.0655 -2.7308 -7.0559 20 6 2.8807 -3.3190 -7.8246 21 7 3.3703 -4.0109 -9.0244 22 6 3.4318 -2.7137 -4.6353 23 6 2.9725 -2.0694 -3.5052 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1616 3.4844 28 1 2.2489 -1.6317 -1.1528 29 1 2.5190 1.0264 -4.8205 30 1 3.3312 -0.1446 -6.8251 31 1 4.5965 -2.0231 -7.6926 32 1 4.7421 -3.5331 -6.7614 33 1 2.3497 -4.0266 -7.1878 34 1 2.2042 -2.5166 -8.1189 35 1 4.0490 -4.7173 -8.7827 36 1 2.6061 -4.4088 -9.5495 37 1 3.6896 -3.7616 -4.5907 38 1 2.8700 -2.6118 -2.5769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070542224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:41 Heat of formation + Delta-G solvation = -49.934257 kcal Electronic energy + Delta-G solvation = -18804.308282 eV Core-core repulsion = 15837.780910 eV Total energy + Delta-G solvation = -2966.527372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17673 -39.61403 -36.80716 -36.35493 -34.45609 -33.05718 -31.98908 -30.83174 -28.55953 -27.37210 -24.76733 -23.69099 -23.00533 -22.08539 -21.05590 -19.51826 -17.92148 -17.36087 -17.01617 -16.63737 -16.22642 -15.92270 -15.74855 -15.53882 -15.15819 -14.70801 -14.47295 -14.42991 -14.18573 -13.81650 -13.55679 -13.01344 -12.91903 -12.78887 -12.65003 -12.37747 -12.29660 -12.24033 -12.13467 -11.80761 -11.15376 -10.87637 -10.61920 -9.97346 -9.94528 -9.64995 -9.55598 -8.19717 -6.38052 -0.13337 0.41724 1.44284 1.45280 1.56125 1.92970 2.32134 2.56308 2.88922 3.10839 3.53149 3.82196 3.87455 4.02442 4.17683 4.22912 4.32700 4.44829 4.53523 4.66135 4.70733 4.88012 4.89810 4.96787 5.04802 5.10125 5.21121 5.32558 5.36364 5.46034 5.55955 5.60151 5.64687 5.86560 5.95296 6.05503 6.24315 6.62642 6.68659 6.88532 7.28073 7.46098 8.87028 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003627 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.942827 B = 7717.075244 C = 8165.530187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.258 1.258 12 N -0.698 5.698 13 C 0.536 3.464 14 O -0.601 6.601 15 C -0.152 4.152 16 C -0.076 4.076 17 C -0.122 4.122 18 C -0.056 4.056 19 C -0.074 4.074 20 C 0.068 3.932 21 N -0.859 5.859 22 C -0.119 4.119 23 C -0.085 4.085 24 H 0.010 0.990 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.266 0.734 28 H 0.404 0.596 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.348 0.652 36 H 0.350 0.650 37 H 0.158 0.842 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -13.233 -18.755 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.182 1.182 12 N -0.346 5.346 13 C 0.325 3.675 14 O -0.485 6.485 15 C -0.155 4.155 16 C -0.095 4.095 17 C -0.139 4.139 18 C -0.057 4.057 19 C -0.111 4.111 20 C -0.063 4.063 21 N -0.390 5.390 22 C -0.137 4.137 23 C -0.104 4.104 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.793 -11.591 -18.835 22.862 hybrid contribution -0.437 -0.806 1.653 1.891 sum 5.356 -12.397 -17.182 21.854 Atomic orbital electron populations 1.21906 0.98153 0.99594 0.99616 1.18398 0.91264 0.91941 0.81776 0.98425 1.21529 1.32785 1.13707 0.90677 0.90713 1.25846 0.94770 0.95599 1.02432 1.70059 1.36897 1.23939 1.24729 0.85289 0.77749 0.79222 0.77744 1.20354 1.20840 1.18153 1.46224 1.64657 1.14189 1.09557 1.19025 0.77661 0.86379 0.84446 1.90676 1.53767 1.17994 1.86029 1.20004 1.06163 0.95800 0.93559 1.21304 0.96341 1.00113 0.91773 1.21229 0.99717 0.94825 0.98164 1.20284 0.96046 0.93566 0.95765 1.20597 0.97789 1.00360 0.92402 1.21689 0.95972 0.97929 0.90721 1.58704 1.20076 1.36886 1.23369 1.21285 0.99800 1.01249 0.91319 1.21520 0.96347 0.92290 1.00211 0.97093 0.93897 0.91202 0.92448 0.75967 0.86315 0.83285 0.89746 0.89301 0.94966 0.91597 0.83839 0.83628 0.82469 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.37 16 2 C 0.27 14.53 2.56 44.24 0.11 14.64 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 8 Si 0.98 42.12 29.54 68.60 2.03 44.15 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 12 N -0.70 -30.90 5.02 -448.99 -2.25 -33.15 16 13 C 0.54 23.75 7.74 86.79 0.67 24.42 16 14 O -0.60 -31.97 16.01 -3.87 -0.06 -32.03 16 15 C -0.15 -5.10 5.87 -20.09 -0.12 -5.22 16 16 C -0.08 -2.28 9.60 22.53 0.22 -2.07 16 17 C -0.12 -2.65 9.68 22.23 0.22 -2.43 16 18 C -0.06 -1.01 5.14 -19.80 -0.10 -1.12 16 19 C -0.07 -0.93 5.60 29.85 0.17 -0.76 16 20 C 0.07 0.83 6.77 86.30 0.58 1.41 16 21 N -0.86 -8.77 9.62 -186.72 -1.80 -10.57 16 22 C -0.12 -2.26 9.68 22.23 0.22 -2.04 16 23 C -0.08 -2.17 9.54 22.53 0.21 -1.95 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 3.97 6.07 -2.38 -0.01 3.95 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.40 14.93 6.57 -92.71 -0.61 14.32 16 29 H 0.12 3.85 7.65 -2.91 -0.02 3.82 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.09 0.86 8.08 -2.39 -0.02 0.85 16 33 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.35 2.53 8.99 -89.69 -0.81 1.72 16 36 H 0.35 2.74 9.08 -89.69 -0.81 1.93 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.14 3.14 6.41 -2.91 -0.02 3.12 16 Total: -1.00 -70.72 321.54 0.53 -70.19 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -1.14 Total: 24.19 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 3.52 Total: -9.64 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.81 Total: -96.85 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.06 Total: -32.03 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -70.72 0.53 -70.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070542224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.252 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds