Wall clock time and date at job start Mon Mar 30 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47316 * 2 1 4 4 H 1.09004 * 109.47460 * 55.00175 * 3 2 1 5 5 C 1.50699 * 109.47462 * 175.00331 * 3 2 1 6 6 H 1.07995 * 120.00311 * 119.99596 * 5 3 2 7 7 C 1.37885 * 119.99594 * 299.72314 * 5 3 2 8 8 N 1.31519 * 120.00146 * 0.27315 * 7 5 3 9 9 Si 1.86796 * 119.99808 * 180.27350 * 7 5 3 10 10 H 1.48497 * 109.47313 * 60.00201 * 9 7 5 11 11 H 1.48504 * 109.47054 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47293 * 299.99956 * 9 7 5 13 13 N 1.46501 * 109.47012 * 295.00022 * 3 2 1 14 14 C 1.34772 * 120.00174 * 85.00222 * 13 3 2 15 15 O 1.21604 * 120.00136 * 359.97438 * 14 13 3 16 16 C 1.47430 * 120.00279 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.20890 * 354.06261 * 16 14 13 18 18 C 1.37744 * 119.93158 * 180.02562 * 17 16 14 19 19 C 1.50693 * 119.82670 * 180.02562 * 18 17 16 20 20 C 1.38613 * 120.34854 * 0.02761 * 18 17 16 21 21 C 1.37955 * 120.42800 * 359.97438 * 20 18 17 22 22 C 1.38965 * 120.05863 * 359.72157 * 21 20 18 23 23 N 1.38868 * 120.17649 * 180.30203 * 22 21 20 24 24 H 1.09001 * 109.47086 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47331 * 59.99891 * 1 2 3 26 26 H 1.08998 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46888 * 239.99459 * 2 1 3 28 28 H 1.09004 * 109.46913 * 120.00110 * 2 1 3 29 29 H 0.96994 * 119.99820 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00021 * 264.99852 * 13 3 2 31 31 H 1.08004 * 120.03556 * 359.97438 * 17 16 14 32 32 H 1.08999 * 109.47258 * 90.00135 * 19 18 17 33 33 H 1.09002 * 109.47242 * 209.99654 * 19 18 17 34 34 H 1.08995 * 109.47103 * 330.00242 * 19 18 17 35 35 H 1.08006 * 119.78567 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.96981 * 180.02562 * 21 20 18 37 37 H 0.96998 * 120.00345 * 185.74050 * 23 22 21 38 38 H 0.97010 * 120.00095 * 5.73585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1431 0.8834 1.2307 8 7 3.4060 0.3420 2.1758 9 14 6.0044 0.8924 1.3877 10 1 6.4946 2.2942 1.3849 11 1 6.3970 0.2339 2.6595 12 1 6.6013 0.1570 0.2441 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0450 3.3230 -2.6269 17 6 0.9743 3.4715 -3.6598 18 6 0.6037 4.0883 -4.8344 19 6 1.6076 4.2467 -5.9470 20 6 -0.6879 4.5640 -4.9984 21 6 -1.6171 4.4252 -3.9882 22 6 -1.2637 3.8002 -2.7984 23 7 -2.1989 3.6535 -1.7824 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8289 -0.0522 2.9546 30 1 2.2719 2.1231 -1.9978 31 1 1.9824 3.1039 -3.5370 32 1 1.5643 3.3767 -6.6021 33 1 1.3764 5.1447 -6.5199 34 1 2.6083 4.3333 -5.5237 35 1 -0.9688 5.0458 -5.9233 36 1 -2.6215 4.7982 -4.1240 37 1 -1.9292 3.2929 -0.9233 38 1 -3.1220 3.9118 -1.9317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071383492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:44 Heat of formation + Delta-G solvation = -23.675646 kcal Electronic energy + Delta-G solvation = -19814.746251 eV Core-core repulsion = 16849.357538 eV Total energy + Delta-G solvation = -2965.388714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97650 -38.08379 -35.45306 -34.42676 -32.53932 -31.46742 -30.61792 -30.09375 -26.92880 -25.65235 -23.77806 -22.89350 -21.43819 -20.03355 -19.38315 -17.47587 -16.69943 -16.59239 -15.61829 -15.35116 -14.64055 -14.57857 -14.03368 -13.86726 -13.62622 -13.53879 -12.98206 -12.68271 -12.49679 -12.05496 -11.85183 -11.68251 -11.47298 -11.24453 -11.07144 -10.98234 -10.81475 -10.32077 -10.20040 -10.15100 -9.62528 -9.06281 -8.97372 -8.77978 -8.49567 -7.84974 -7.19772 -6.11945 -4.21284 1.25159 1.76329 3.26109 3.31381 3.32596 3.44423 4.13049 4.23189 4.29716 4.40935 4.94525 5.01737 5.19177 5.21219 5.36530 5.62881 5.70620 5.74571 5.83231 6.10296 6.10714 6.37776 6.39806 6.44185 6.47030 6.66321 6.77793 7.01309 7.06683 7.19714 7.35868 7.42170 7.61813 7.71646 7.79152 7.91308 8.14251 8.25720 8.68533 8.78277 9.16075 9.46130 10.93392 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.005615 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.895285 B = 4985.125334 C = 5878.461823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.557 3.443 15 O -0.561 6.561 16 C -0.215 4.215 17 C -0.034 4.034 18 C -0.167 4.167 19 C -0.102 4.102 20 C -0.050 4.050 21 C -0.217 4.217 22 C 0.272 3.728 23 N -0.858 5.858 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.419 0.581 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 6.079 -12.999 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.346 3.654 15 O -0.443 6.443 16 C -0.223 4.223 17 C -0.054 4.054 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.069 4.069 21 C -0.240 4.240 22 C 0.160 3.840 23 N -0.406 5.406 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.263 0.737 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.227 5.883 -12.026 15.214 hybrid contribution 0.977 -0.040 -0.045 0.979 sum -6.250 5.843 -12.071 14.795 Atomic orbital electron populations 1.21838 0.98402 0.98010 1.01191 1.21927 0.92610 0.99774 1.02268 1.18808 0.94231 0.89194 0.80928 0.93201 1.21194 0.90709 1.39236 1.06191 0.92155 1.24877 0.98589 0.94775 0.95357 1.69884 1.35223 1.37644 1.09225 0.86516 0.84873 0.78321 0.77445 1.20192 1.21138 1.20146 1.46377 1.14386 1.55269 1.18532 1.17972 0.82707 0.78479 0.86291 1.90333 1.51153 1.62100 1.40722 1.19630 0.94298 1.11072 0.97327 1.21012 0.98272 0.94602 0.91499 1.19481 0.95514 1.05340 0.96569 1.20626 0.97549 1.01437 0.96303 1.20820 0.92324 0.96245 0.97489 1.20548 1.00631 1.08505 0.94293 1.17762 0.88324 0.89583 0.88336 1.43514 1.09494 1.70731 1.16817 0.93170 0.94227 0.95923 0.95040 0.88293 0.92521 0.77811 0.85769 0.91989 0.92234 0.91892 0.86339 0.86151 0.73662 0.78639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.10 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.79 2.24 -69.09 -0.15 6.64 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.80 5.30 -17.81 -0.09 1.70 16 8 N -0.88 -24.63 11.30 55.43 0.63 -24.00 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.79 4.97 -56.01 -0.28 -15.07 16 14 C 0.56 11.41 6.31 -12.52 -0.08 11.33 16 15 O -0.56 -12.55 10.78 5.27 0.06 -12.49 16 16 C -0.21 -3.69 5.89 -104.80 -0.62 -4.30 16 17 C -0.03 -0.51 9.16 -39.20 -0.36 -0.87 16 18 C -0.17 -2.11 5.87 -104.67 -0.61 -2.72 16 19 C -0.10 -1.00 10.00 36.00 0.36 -0.64 16 20 C -0.05 -0.59 9.67 -39.55 -0.38 -0.97 16 21 C -0.22 -2.75 9.88 -39.42 -0.39 -3.14 16 22 C 0.27 4.20 6.76 -83.61 -0.57 3.64 16 23 N -0.86 -12.47 8.93 32.55 0.29 -12.18 16 24 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 25 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 2.66 5.97 -51.93 -0.31 2.35 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 7.29 6.60 -40.82 -0.27 7.02 16 31 H 0.12 1.69 6.45 -52.48 -0.34 1.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.08 -51.93 -0.42 0.08 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.42 7.14 5.34 -40.94 -0.22 6.92 16 38 H 0.39 4.27 8.84 -40.82 -0.36 3.91 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -29.31 307.63 -7.80 -37.11 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.09 Total: 16.16 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.03 Total: -9.73 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.64 Total: -51.24 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.31 -7.80 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071383492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds