Wall clock time and date at job start Mon Mar 30 2020 04:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47316 * 2 1 4 4 H 1.09004 * 109.47460 * 55.00175 * 3 2 1 5 5 C 1.50699 * 109.47462 * 175.00331 * 3 2 1 6 6 H 1.07995 * 120.00311 * 119.99596 * 5 3 2 7 7 C 1.37885 * 119.99594 * 299.72314 * 5 3 2 8 8 N 1.31519 * 120.00146 * 0.27315 * 7 5 3 9 9 Si 1.86796 * 119.99808 * 180.27350 * 7 5 3 10 10 H 1.48497 * 109.47313 * 60.00201 * 9 7 5 11 11 H 1.48504 * 109.47054 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47293 * 299.99956 * 9 7 5 13 13 N 1.46501 * 109.47012 * 295.00022 * 3 2 1 14 14 C 1.34772 * 120.00174 * 85.00222 * 13 3 2 15 15 O 1.21604 * 120.00136 * 359.97438 * 14 13 3 16 16 C 1.47430 * 120.00279 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.20890 * 354.06261 * 16 14 13 18 18 C 1.37744 * 119.93158 * 180.02562 * 17 16 14 19 19 C 1.50693 * 119.82670 * 180.02562 * 18 17 16 20 20 C 1.38613 * 120.34854 * 0.02761 * 18 17 16 21 21 C 1.37955 * 120.42800 * 359.97438 * 20 18 17 22 22 C 1.38965 * 120.05863 * 359.72157 * 21 20 18 23 23 N 1.38868 * 120.17649 * 180.30203 * 22 21 20 24 24 H 1.09001 * 109.47086 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47331 * 59.99891 * 1 2 3 26 26 H 1.08998 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46888 * 239.99459 * 2 1 3 28 28 H 1.09004 * 109.46913 * 120.00110 * 2 1 3 29 29 H 0.96994 * 119.99820 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00021 * 264.99852 * 13 3 2 31 31 H 1.08004 * 120.03556 * 359.97438 * 17 16 14 32 32 H 1.08999 * 109.47258 * 90.00135 * 19 18 17 33 33 H 1.09002 * 109.47242 * 209.99654 * 19 18 17 34 34 H 1.08995 * 109.47103 * 330.00242 * 19 18 17 35 35 H 1.08006 * 119.78567 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.96981 * 180.02562 * 21 20 18 37 37 H 0.96998 * 120.00345 * 185.74050 * 23 22 21 38 38 H 0.97010 * 120.00095 * 5.73585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1431 0.8834 1.2307 8 7 3.4060 0.3420 2.1758 9 14 6.0044 0.8924 1.3877 10 1 6.4946 2.2942 1.3849 11 1 6.3970 0.2339 2.6595 12 1 6.6013 0.1570 0.2441 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0450 3.3230 -2.6269 17 6 0.9743 3.4715 -3.6598 18 6 0.6037 4.0883 -4.8344 19 6 1.6076 4.2467 -5.9470 20 6 -0.6879 4.5640 -4.9984 21 6 -1.6171 4.4252 -3.9882 22 6 -1.2637 3.8002 -2.7984 23 7 -2.1989 3.6535 -1.7824 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8289 -0.0522 2.9546 30 1 2.2719 2.1231 -1.9978 31 1 1.9824 3.1039 -3.5370 32 1 1.5643 3.3767 -6.6021 33 1 1.3764 5.1447 -6.5199 34 1 2.6083 4.3333 -5.5237 35 1 -0.9688 5.0458 -5.9233 36 1 -2.6215 4.7982 -4.1240 37 1 -1.9292 3.2929 -0.9233 38 1 -3.1220 3.9118 -1.9317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071383492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:43 Heat of formation + Delta-G solvation = -42.545276 kcal Electronic energy + Delta-G solvation = -19815.564500 eV Core-core repulsion = 16849.357538 eV Total energy + Delta-G solvation = -2966.206962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32689 -39.45420 -37.08486 -35.74746 -34.32638 -33.18964 -31.61940 -31.48676 -28.85958 -26.61921 -25.35717 -24.47830 -22.74845 -21.52285 -21.16745 -19.03920 -18.06305 -17.72312 -17.21879 -17.09789 -16.27186 -16.23390 -15.43621 -14.98335 -14.68908 -14.60526 -14.53187 -14.38438 -13.82115 -13.51153 -13.19885 -13.17451 -12.93013 -12.87941 -12.66234 -12.62597 -12.18758 -12.08276 -12.01227 -11.59403 -11.18909 -11.06593 -10.61317 -10.48090 -9.92479 -9.59644 -8.30397 -8.16114 -6.33552 0.11189 0.71622 1.44638 1.46506 1.54216 2.09156 2.36713 2.69221 3.05916 3.13533 3.13929 3.92486 3.97313 4.15593 4.47409 4.48685 4.54975 4.56301 4.70290 4.79248 4.88344 5.01291 5.05354 5.11673 5.21424 5.29630 5.34905 5.43148 5.45199 5.54797 5.61070 5.78241 5.79458 5.92979 6.04284 6.15876 6.63747 6.74255 6.95422 7.08857 7.34158 7.60586 8.89003 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.005615 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.895285 B = 4985.125334 C = 5878.461823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.700 5.700 14 C 0.551 3.449 15 O -0.589 6.589 16 C -0.247 4.247 17 C -0.045 4.045 18 C -0.165 4.165 19 C -0.102 4.102 20 C -0.040 4.040 21 C -0.212 4.212 22 C 0.255 3.745 23 N -0.860 5.860 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.399 0.601 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.408 0.592 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 7.052 -15.914 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.342 3.658 15 O -0.473 6.473 16 C -0.255 4.255 17 C -0.065 4.065 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.059 4.059 21 C -0.235 4.235 22 C 0.143 3.857 23 N -0.407 5.407 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.235 0.765 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.049 6.879 -14.997 17.942 hybrid contribution 0.829 -0.269 0.788 1.175 sum -6.221 6.610 -14.209 16.860 Atomic orbital electron populations 1.21661 0.96924 0.99059 1.00268 1.21774 0.93848 0.99121 1.01151 1.18385 0.93677 0.89152 0.81191 0.98143 1.21540 0.91439 1.39258 1.06650 0.91284 1.25753 1.03313 0.94286 0.94941 1.70037 1.37129 1.38332 1.09705 0.85434 0.79096 0.78429 0.77597 1.19744 1.21070 1.18912 1.46132 1.15316 1.55777 1.17567 1.18580 0.81877 0.77918 0.87406 1.90322 1.51787 1.63020 1.42126 1.19467 0.96037 1.13537 0.96502 1.21135 0.98077 0.95317 0.91942 1.19869 0.96712 1.03878 0.96305 1.20688 0.96685 1.02911 0.95552 1.21312 0.91484 0.94657 0.98415 1.20906 1.02265 1.07244 0.93068 1.18064 0.87886 0.90192 0.89532 1.43446 1.10387 1.70662 1.16187 0.95147 0.94024 0.93725 0.94410 0.90864 0.92571 0.76516 0.85558 0.90927 0.90140 0.91890 0.82518 0.83265 0.75134 0.76859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.98 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 5 C -0.55 -29.64 8.73 25.60 0.22 -29.41 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.94 5.30 84.66 0.45 1.39 16 8 N -0.91 -52.57 11.30 21.45 0.24 -52.32 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -30.61 4.97 -449.38 -2.23 -32.84 16 14 C 0.55 23.36 6.31 86.67 0.55 23.91 16 15 O -0.59 -27.66 10.78 -4.04 -0.04 -27.70 16 16 C -0.25 -8.47 5.89 -19.98 -0.12 -8.58 16 17 C -0.05 -1.29 9.16 22.51 0.21 -1.09 16 18 C -0.17 -3.69 5.87 -19.89 -0.12 -3.80 16 19 C -0.10 -1.62 10.00 71.23 0.71 -0.91 16 20 C -0.04 -0.78 9.67 22.29 0.22 -0.56 16 21 C -0.21 -4.73 9.88 22.38 0.22 -4.51 16 22 C 0.26 7.64 6.76 38.72 0.26 7.90 16 23 N -0.86 -24.86 8.93 -50.94 -0.46 -25.31 16 24 H 0.03 1.48 7.84 -2.39 -0.02 1.46 16 25 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 4.09 5.97 -2.38 -0.01 4.08 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.70 16 30 H 0.40 15.31 6.60 -92.71 -0.61 14.70 16 31 H 0.13 3.38 6.45 -2.91 -0.02 3.36 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.41 14.33 5.34 -94.56 -0.51 13.83 16 38 H 0.40 8.53 8.84 -92.70 -0.82 7.72 16 Total: -1.00 -65.61 307.63 2.18 -63.43 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -0.84 Total: 42.14 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.48 Total: -11.79 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -2.45 Total: -110.48 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -65.61 2.18 -63.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071383492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.886 kcal (2) G-P(sol) polarization free energy of solvation -65.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds