Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47270 * 2 1 4 4 H 1.09004 * 109.46972 * 305.15844 * 3 2 1 5 5 C 1.50702 * 109.47134 * 185.16474 * 3 2 1 6 6 H 1.08002 * 119.99672 * 274.83000 * 5 3 2 7 7 C 1.37875 * 120.00194 * 94.82502 * 5 3 2 8 8 N 1.31513 * 119.99790 * 182.47838 * 7 5 3 9 9 Si 1.86793 * 120.00029 * 2.48766 * 7 5 3 10 10 H 1.48502 * 109.47368 * 84.83850 * 9 7 5 11 11 H 1.48504 * 109.47368 * 204.84158 * 9 7 5 12 12 H 1.48506 * 109.47274 * 324.83948 * 9 7 5 13 13 N 1.46496 * 109.46887 * 65.15960 * 3 2 1 14 14 C 1.34774 * 120.00369 * 274.99939 * 13 3 2 15 15 O 1.21602 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.47431 * 119.99903 * 180.02562 * 14 13 3 17 17 C 1.39733 * 120.20837 * 6.34022 * 16 14 13 18 18 C 1.37751 * 119.92020 * 180.02562 * 17 16 14 19 19 C 1.50707 * 119.81934 * 179.97438 * 18 17 16 20 20 C 1.38609 * 120.36047 * 0.02562 * 18 17 16 21 21 C 1.37958 * 120.41953 * 359.97438 * 20 18 17 22 22 C 1.38961 * 120.06362 * 359.72635 * 21 20 18 23 23 N 1.38872 * 120.17852 * 180.29648 * 22 21 20 24 24 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47207 * 59.99902 * 1 2 3 26 26 H 1.09001 * 109.46802 * 300.00411 * 1 2 3 27 27 H 1.08994 * 109.47088 * 120.00305 * 2 1 3 28 28 H 1.09001 * 109.47077 * 240.00062 * 2 1 3 29 29 H 0.96999 * 119.99918 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99663 * 95.00534 * 13 3 2 31 31 H 1.07992 * 120.03883 * 359.97150 * 17 16 14 32 32 H 1.09001 * 109.46932 * 89.99636 * 19 18 17 33 33 H 1.08989 * 109.47215 * 209.99530 * 19 18 17 34 34 H 1.08999 * 109.47253 * 329.99996 * 19 18 17 35 35 H 1.07989 * 119.79111 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.96653 * 180.02562 * 21 20 18 37 37 H 0.96995 * 120.00087 * 202.85310 * 23 22 21 38 38 H 0.97003 * 119.99188 * 22.85827 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9824 -0.8402 5 6 3.5416 1.4444 -0.1279 6 1 4.1586 1.3384 0.7522 7 6 4.1277 1.5814 -1.3683 8 7 5.4367 1.5341 -1.4859 9 14 3.0625 1.8343 -2.8818 10 1 2.7434 3.2773 -3.0271 11 1 3.7941 1.3653 -4.0861 12 1 1.8030 1.0611 -2.7356 13 7 1.6558 2.0963 1.2534 14 6 0.4388 2.6631 1.3724 15 8 -0.3405 2.6315 0.4394 16 6 0.0524 3.3215 2.6336 17 6 0.9872 3.4775 3.6604 18 6 0.6196 4.0931 4.8366 19 6 1.6295 4.2595 5.9428 20 6 -0.6743 4.5593 5.0087 21 6 -1.6089 4.4129 4.0045 22 6 -1.2553 3.8002 2.8084 23 7 -2.1925 3.6571 1.7937 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 5.8491 1.6309 -2.3586 30 1 2.2773 2.1213 1.9977 31 1 1.9964 3.1150 3.5324 32 1 2.1498 5.2094 5.8198 33 1 1.1191 4.2470 6.9057 34 1 2.3502 3.4427 5.9028 35 1 -0.9524 5.0408 5.9344 36 1 -2.6149 4.7793 4.1463 37 1 -2.0764 2.9693 1.1197 38 1 -2.9632 4.2452 1.7589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071383493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -24.123980 kcal Electronic energy + Delta-G solvation = -19887.239194 eV Core-core repulsion = 16921.831039 eV Total energy + Delta-G solvation = -2965.408155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03217 -38.19216 -35.51560 -34.47963 -32.48537 -31.91190 -30.66384 -30.26324 -27.44835 -25.68919 -23.76682 -22.76005 -21.55759 -20.06828 -19.55552 -17.58265 -16.86454 -16.66176 -15.98471 -15.41092 -14.94121 -14.44896 -14.02459 -13.94578 -13.71107 -13.57205 -13.16477 -12.77439 -12.54203 -12.13410 -12.00488 -11.89701 -11.79563 -11.67732 -11.11626 -10.95329 -10.69712 -10.66391 -10.11494 -9.97166 -9.85982 -9.19720 -9.06000 -8.82304 -8.71944 -8.00937 -7.30163 -6.23281 -4.27029 1.19377 1.67812 3.26143 3.34013 3.36823 3.41078 4.06037 4.18251 4.21838 4.32663 4.91339 4.98208 5.09043 5.21238 5.34832 5.58786 5.69475 5.70428 5.78941 6.04687 6.07005 6.08049 6.08657 6.24162 6.35876 6.39449 6.65264 6.73360 6.77781 6.95366 6.98822 7.00718 7.28795 7.36903 7.54847 7.74411 8.11010 8.16913 8.59742 8.77462 9.02247 9.38927 10.88448 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006023 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.209396 B = 4647.384312 C = 5282.445214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.696 5.696 14 C 0.554 3.446 15 O -0.562 6.562 16 C -0.206 4.206 17 C -0.039 4.039 18 C -0.158 4.158 19 C -0.104 4.104 20 C -0.054 4.054 21 C -0.208 4.208 22 C 0.265 3.735 23 N -0.862 5.862 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.392 0.608 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.415 0.585 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 4.398 11.841 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.343 5.343 14 C 0.343 3.657 15 O -0.445 6.445 16 C -0.214 4.214 17 C -0.059 4.059 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.073 4.073 21 C -0.230 4.230 22 C 0.155 3.845 23 N -0.407 5.407 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.050 4.307 10.985 16.865 hybrid contribution -0.337 0.204 -0.740 0.838 sum -12.387 4.511 10.245 16.695 Atomic orbital electron populations 1.21903 0.97517 0.98805 1.01937 1.22075 0.93658 0.99480 1.01224 1.19155 0.95428 0.88993 0.82927 0.93135 1.21015 0.88627 1.51786 0.95441 0.90352 1.24928 0.94862 0.93623 0.98864 1.69878 1.09215 1.48604 1.24819 0.86900 0.81146 0.79531 0.82364 1.19933 1.21250 1.18346 1.46494 1.14452 1.55248 1.18142 1.18068 0.82687 0.78502 0.86489 1.90479 1.51351 1.61869 1.40760 1.19760 0.93441 1.11332 0.96917 1.21068 0.98328 0.94899 0.91556 1.19539 0.95441 1.04452 0.96560 1.20653 0.97441 1.02074 0.95933 1.20853 0.92363 0.96277 0.97854 1.20652 1.00183 1.09147 0.93050 1.17702 0.87659 0.91245 0.87920 1.42951 1.25677 1.40812 1.31285 0.95150 0.93076 0.93216 0.92996 0.92097 0.92257 0.77322 0.85568 0.91819 0.92158 0.91757 0.86256 0.86094 0.74621 0.78327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 37.16 0.32 -2.54 16 2 C -0.13 -2.72 5.58 -26.73 -0.15 -2.87 16 3 C 0.24 5.61 1.86 -69.08 -0.13 5.48 16 4 H 0.05 1.30 4.85 -51.93 -0.25 1.05 16 5 C -0.53 -14.22 9.05 -34.44 -0.31 -14.53 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 9 Si 0.87 21.60 26.89 -169.99 -4.57 17.03 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.26 6.91 56.52 0.39 -5.87 16 13 N -0.70 -14.23 4.97 -56.01 -0.28 -14.51 16 14 C 0.55 10.91 6.31 -12.52 -0.08 10.83 16 15 O -0.56 -12.00 10.93 5.28 0.06 -11.95 16 16 C -0.21 -3.43 5.89 -104.80 -0.62 -4.04 16 17 C -0.04 -0.57 9.16 -39.20 -0.36 -0.92 16 18 C -0.16 -1.95 5.87 -104.66 -0.61 -2.57 16 19 C -0.10 -1.01 10.00 36.01 0.36 -0.65 16 20 C -0.05 -0.62 9.67 -39.55 -0.38 -1.00 16 21 C -0.21 -2.54 9.92 -39.42 -0.39 -2.93 16 22 C 0.26 3.93 6.76 -83.61 -0.57 3.36 16 23 N -0.86 -11.87 8.54 32.55 0.28 -11.59 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 26 H 0.05 0.98 5.64 -51.93 -0.29 0.68 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.36 8.11 -51.93 -0.42 0.94 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.39 7.25 6.66 -40.82 -0.27 6.98 16 31 H 0.13 1.71 6.45 -52.49 -0.34 1.37 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.49 8.08 -51.94 -0.42 0.07 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.42 6.53 6.02 -40.82 -0.25 6.28 16 38 H 0.39 4.14 8.90 -40.82 -0.36 3.77 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -30.44 308.04 -7.23 -37.67 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.11 Total: 14.27 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.02 Total: -10.20 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.77 Total: -51.47 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.57 Total: 17.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.44 -7.23 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071383493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.545 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds