Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47270 * 2 1 4 4 H 1.09004 * 109.46972 * 305.15844 * 3 2 1 5 5 C 1.50702 * 109.47134 * 185.16474 * 3 2 1 6 6 H 1.08002 * 119.99672 * 274.83000 * 5 3 2 7 7 C 1.37875 * 120.00194 * 94.82502 * 5 3 2 8 8 N 1.31513 * 119.99790 * 182.47838 * 7 5 3 9 9 Si 1.86793 * 120.00029 * 2.48766 * 7 5 3 10 10 H 1.48502 * 109.47368 * 84.83850 * 9 7 5 11 11 H 1.48504 * 109.47368 * 204.84158 * 9 7 5 12 12 H 1.48506 * 109.47274 * 324.83948 * 9 7 5 13 13 N 1.46496 * 109.46887 * 65.15960 * 3 2 1 14 14 C 1.34774 * 120.00369 * 274.99939 * 13 3 2 15 15 O 1.21602 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.47431 * 119.99903 * 180.02562 * 14 13 3 17 17 C 1.39733 * 120.20837 * 6.34022 * 16 14 13 18 18 C 1.37751 * 119.92020 * 180.02562 * 17 16 14 19 19 C 1.50707 * 119.81934 * 179.97438 * 18 17 16 20 20 C 1.38609 * 120.36047 * 0.02562 * 18 17 16 21 21 C 1.37958 * 120.41953 * 359.97438 * 20 18 17 22 22 C 1.38961 * 120.06362 * 359.72635 * 21 20 18 23 23 N 1.38872 * 120.17852 * 180.29648 * 22 21 20 24 24 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47207 * 59.99902 * 1 2 3 26 26 H 1.09001 * 109.46802 * 300.00411 * 1 2 3 27 27 H 1.08994 * 109.47088 * 120.00305 * 2 1 3 28 28 H 1.09001 * 109.47077 * 240.00062 * 2 1 3 29 29 H 0.96999 * 119.99918 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99663 * 95.00534 * 13 3 2 31 31 H 1.07992 * 120.03883 * 359.97150 * 17 16 14 32 32 H 1.09001 * 109.46932 * 89.99636 * 19 18 17 33 33 H 1.08989 * 109.47215 * 209.99530 * 19 18 17 34 34 H 1.08999 * 109.47253 * 329.99996 * 19 18 17 35 35 H 1.07989 * 119.79111 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.96653 * 180.02562 * 21 20 18 37 37 H 0.96995 * 120.00087 * 202.85310 * 23 22 21 38 38 H 0.97003 * 119.99188 * 22.85827 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9824 -0.8402 5 6 3.5416 1.4444 -0.1279 6 1 4.1586 1.3384 0.7522 7 6 4.1277 1.5814 -1.3683 8 7 5.4367 1.5341 -1.4859 9 14 3.0625 1.8343 -2.8818 10 1 2.7434 3.2773 -3.0271 11 1 3.7941 1.3653 -4.0861 12 1 1.8030 1.0611 -2.7356 13 7 1.6558 2.0963 1.2534 14 6 0.4388 2.6631 1.3724 15 8 -0.3405 2.6315 0.4394 16 6 0.0524 3.3215 2.6336 17 6 0.9872 3.4775 3.6604 18 6 0.6196 4.0931 4.8366 19 6 1.6295 4.2595 5.9428 20 6 -0.6743 4.5593 5.0087 21 6 -1.6089 4.4129 4.0045 22 6 -1.2553 3.8002 2.8084 23 7 -2.1925 3.6571 1.7937 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 5.8491 1.6309 -2.3586 30 1 2.2773 2.1213 1.9977 31 1 1.9964 3.1150 3.5324 32 1 2.1498 5.2094 5.8198 33 1 1.1191 4.2470 6.9057 34 1 2.3502 3.4427 5.9028 35 1 -0.9524 5.0408 5.9344 36 1 -2.6149 4.7793 4.1463 37 1 -2.0764 2.9693 1.1197 38 1 -2.9632 4.2452 1.7589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071383493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -44.540323 kcal Electronic energy + Delta-G solvation = -19888.124513 eV Core-core repulsion = 16921.831039 eV Total energy + Delta-G solvation = -2966.293474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33628 -39.50235 -37.07936 -35.71640 -34.39634 -33.53115 -31.64879 -31.50177 -29.32993 -26.62848 -25.18208 -24.40506 -22.78265 -21.46143 -21.25055 -19.29393 -18.21788 -17.80301 -17.42873 -17.05827 -16.40003 -16.10055 -15.46191 -15.10190 -14.80625 -14.75299 -14.56068 -14.40761 -13.88656 -13.77166 -13.65265 -13.21450 -12.95027 -12.88272 -12.66108 -12.55420 -12.35651 -12.05769 -11.87393 -11.69026 -11.20256 -11.11642 -10.87230 -10.53849 -9.93457 -9.64678 -8.39871 -8.35444 -6.45833 0.08968 0.66566 1.27816 1.31831 1.42810 2.06528 2.25847 2.51552 3.01229 3.05793 3.15180 3.91211 3.96070 4.14248 4.30855 4.40807 4.47746 4.48994 4.57878 4.72830 4.84311 4.87260 4.98909 5.08163 5.11228 5.23680 5.24815 5.29615 5.34582 5.42541 5.43568 5.55152 5.76873 5.77430 6.02463 6.13161 6.58591 6.67612 6.90003 7.08733 7.20597 7.50720 8.75253 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006023 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.209396 B = 4647.384312 C = 5282.445214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.244 3.756 4 H 0.031 0.969 5 C -0.528 4.528 6 H 0.054 0.946 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.252 1.252 13 N -0.701 5.701 14 C 0.552 3.448 15 O -0.584 6.584 16 C -0.238 4.238 17 C -0.052 4.052 18 C -0.159 4.159 19 C -0.104 4.104 20 C -0.045 4.045 21 C -0.203 4.203 22 C 0.251 3.749 23 N -0.861 5.861 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.270 0.730 30 H 0.400 0.600 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.406 0.594 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 5.163 13.642 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.140 3.860 4 H 0.049 0.951 5 C -0.566 4.566 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.752 3.248 10 H -0.204 1.204 11 H -0.203 1.203 12 H -0.176 1.176 13 N -0.349 5.349 14 C 0.342 3.658 15 O -0.467 6.467 16 C -0.246 4.246 17 C -0.071 4.071 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.063 4.063 21 C -0.225 4.225 22 C 0.141 3.859 23 N -0.406 5.406 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.235 0.765 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.242 0.758 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.101 5.089 12.816 19.723 hybrid contribution 0.260 0.021 -1.136 1.166 sum -13.841 5.109 11.680 18.817 Atomic orbital electron populations 1.21759 0.95699 1.00284 1.01196 1.21985 0.95202 0.97914 1.01137 1.18891 0.93135 0.90225 0.83778 0.95145 1.21222 0.90305 1.50540 0.94513 0.92773 1.25595 0.95750 0.93823 1.01523 1.69977 1.10678 1.50605 1.25604 0.86054 0.79998 0.79115 0.79663 1.20382 1.20262 1.17581 1.46250 1.15426 1.55923 1.17301 1.18548 0.81793 0.77879 0.87539 1.90460 1.51781 1.62611 1.41895 1.19612 0.95075 1.13719 0.96182 1.21164 0.98015 0.95758 0.92190 1.19893 0.96671 1.03255 0.96250 1.20711 0.97043 1.02382 0.95925 1.21321 0.91477 0.94695 0.98843 1.20998 1.01756 1.07872 0.91889 1.17974 0.87164 0.91679 0.89112 1.42908 1.26090 1.40755 1.30872 0.92477 0.94355 0.93391 0.92273 0.92977 0.92054 0.76476 0.85806 0.91151 0.89935 0.91863 0.82573 0.83222 0.75789 0.76691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.52 71.98 0.61 -4.48 16 2 C -0.12 -5.32 5.58 30.60 0.17 -5.15 16 3 C 0.24 11.66 1.86 44.25 0.08 11.74 16 4 H 0.03 1.59 4.85 -2.39 -0.01 1.58 16 5 C -0.53 -29.00 9.05 25.60 0.23 -28.76 16 6 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.91 5.47 84.65 0.46 2.37 16 8 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 9 Si 0.93 45.19 26.89 68.60 1.84 47.04 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.25 -11.88 6.91 99.48 0.69 -11.19 16 13 N -0.70 -29.14 4.97 -449.36 -2.23 -31.38 16 14 C 0.55 21.88 6.31 86.67 0.55 22.42 16 15 O -0.58 -25.10 10.93 -4.04 -0.04 -25.15 16 16 C -0.24 -7.77 5.89 -19.98 -0.12 -7.89 16 17 C -0.05 -1.46 9.16 22.52 0.21 -1.25 16 18 C -0.16 -3.50 5.87 -19.89 -0.12 -3.62 16 19 C -0.10 -1.70 10.00 71.24 0.71 -0.99 16 20 C -0.04 -0.84 9.67 22.29 0.22 -0.62 16 21 C -0.20 -4.27 9.92 22.38 0.22 -4.05 16 22 C 0.25 7.04 6.76 38.72 0.26 7.31 16 23 N -0.86 -22.72 8.54 -50.94 -0.43 -23.15 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.56 7.85 -2.39 -0.02 1.54 16 26 H 0.05 1.85 5.64 -2.39 -0.01 1.84 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.05 2.31 8.11 -2.39 -0.02 2.29 16 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.40 15.19 6.66 -92.71 -0.62 14.58 16 31 H 0.12 3.38 6.45 -2.91 -0.02 3.36 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.16 1.82 8.06 -2.92 -0.02 1.80 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.41 12.61 6.02 -92.71 -0.56 12.05 16 38 H 0.40 7.89 8.90 -92.71 -0.82 7.06 16 Total: -1.00 -66.38 308.04 2.00 -64.38 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.92 Total: 36.93 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 3.49 Total: -12.99 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -2.37 Total: -110.22 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.15 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.84 Total: 47.04 kcal Total: -66.38 2.00 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071383493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.839 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds