Wall clock time and date at job start Mon Mar 30 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.69966 * 2 1 4 4 C 1.53529 * 109.58649 * 239.65154 * 2 1 3 5 5 N 1.47286 * 107.61547 * 182.08296 * 4 2 1 6 6 C 1.36806 * 121.12686 * 222.35705 * 5 4 2 7 7 H 1.07997 * 119.99925 * 154.95418 * 6 5 4 8 8 C 1.38769 * 119.99977 * 334.95759 * 6 5 4 9 9 N 1.31614 * 120.00247 * 345.49075 * 8 6 5 10 10 Si 1.86801 * 119.99857 * 165.49498 * 8 6 5 11 11 H 1.48499 * 109.47346 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47487 * 119.99798 * 10 8 6 13 13 H 1.48500 * 109.46904 * 239.99771 * 10 8 6 14 14 C 1.39813 * 117.74493 * 42.08648 * 5 4 2 15 15 C 1.38824 * 120.09287 * 166.09294 * 14 5 4 16 16 C 1.38166 * 119.85368 * 179.83707 * 15 14 5 17 17 C 1.38342 * 120.09624 * 359.96748 * 16 15 14 18 18 C 1.50703 * 119.83126 * 180.09867 * 17 16 15 19 19 N 1.46908 * 109.46800 * 89.99969 * 18 17 16 20 20 C 1.38237 * 120.34096 * 0.07716 * 17 16 15 21 21 C 1.38664 * 120.05714 * 0.04842 * 20 17 16 22 22 O 1.35874 * 119.67351 * 179.58951 * 21 20 17 23 23 H 1.09001 * 109.47045 * 299.64742 * 1 2 3 24 24 H 1.09004 * 109.46935 * 59.64806 * 1 2 3 25 25 H 1.08994 * 109.47180 * 179.64493 * 1 2 3 26 26 H 1.09000 * 109.46988 * 180.35471 * 3 2 1 27 27 H 1.09000 * 109.46949 * 300.35138 * 3 2 1 28 28 H 1.09000 * 109.46594 * 60.35139 * 3 2 1 29 29 H 1.09006 * 109.83018 * 62.55336 * 4 2 1 30 30 H 1.08998 * 109.83112 * 301.60889 * 4 2 1 31 31 H 0.96998 * 119.99783 * 185.29082 * 9 8 6 32 32 H 1.07998 * 120.06706 * 359.86128 * 15 14 5 33 33 H 1.08004 * 119.94809 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.47218 * 210.00067 * 18 17 16 35 35 H 1.09000 * 109.47079 * 330.00317 * 18 17 16 36 36 H 1.00905 * 110.99649 * 180.02562 * 19 18 17 37 37 H 1.00899 * 111.00141 * 303.95405 * 19 18 17 38 38 H 1.07999 * 119.96884 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4405 0.0000 4 6 2.0447 -0.7308 -1.2482 5 7 3.5158 -0.7494 -1.1790 6 6 4.2791 -0.5018 -2.2870 7 1 5.2843 -0.1229 -2.1765 8 6 3.7616 -0.7374 -3.5529 9 7 2.6675 -1.4554 -3.6934 10 14 4.6180 -0.0357 -5.0574 11 1 5.8179 0.7290 -4.6324 12 1 5.0295 -1.1447 -5.9551 13 1 3.6869 0.8671 -5.7808 14 6 4.1057 -1.0230 0.0587 15 6 5.4558 -1.3378 0.1318 16 6 6.0345 -1.6040 1.3579 17 6 5.2708 -1.5565 2.5104 18 6 5.9086 -1.8457 3.8449 19 7 6.4197 -0.5962 4.4244 20 6 3.9257 -1.2446 2.4444 21 6 3.3338 -0.9782 1.2191 22 8 2.0093 -0.6806 1.1624 23 1 -0.3633 0.5084 0.8931 24 1 -0.3633 0.5193 -0.8868 25 1 -0.3633 -1.0276 -0.0064 26 1 3.1357 1.4362 -0.0064 27 1 1.6793 1.9576 -0.8868 28 1 1.6896 1.9539 0.8931 29 1 1.7233 -0.2016 -2.1454 30 1 1.6623 -1.7514 -1.2631 31 1 2.3486 -1.6847 -4.5803 32 1 6.0525 -1.3741 -0.7676 33 1 7.0846 -1.8495 1.4166 34 1 5.1673 -2.2806 4.5152 35 1 6.7320 -2.5470 3.7096 36 1 6.8529 -0.7638 5.3202 37 1 7.0609 -0.1404 3.7926 38 1 3.3352 -1.2087 3.3480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074337643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:30 Heat of formation + Delta-G solvation = -2.961056 kcal Electronic energy + Delta-G solvation = -20462.583543 eV Core-core repulsion = 17498.093081 eV Total energy + Delta-G solvation = -2964.490462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00885 -37.30229 -35.65085 -34.09311 -32.60121 -31.61820 -29.28810 -28.09490 -26.83844 -26.33967 -24.72309 -22.50637 -21.77296 -21.05378 -18.19967 -17.40947 -16.96767 -15.61983 -15.43545 -15.28710 -14.65748 -14.25061 -14.02929 -13.71392 -13.50661 -13.41435 -12.74939 -12.56934 -12.31055 -12.04785 -11.90452 -11.68814 -11.52092 -11.33013 -11.18914 -11.05005 -10.80084 -10.58936 -10.45250 -10.24539 -9.90614 -9.44790 -9.32438 -8.56462 -8.38513 -7.44480 -6.52218 -6.40224 -3.77108 2.46571 2.46928 3.09927 3.15133 3.19023 3.95779 4.12103 4.61078 4.81784 4.96237 5.18469 5.39570 5.54445 5.55536 5.63256 5.65104 5.82787 6.00066 6.02440 6.10445 6.16737 6.22721 6.30326 6.44390 6.54773 6.65626 6.70343 6.78737 7.04927 7.07275 7.19896 7.33380 7.38433 7.43524 7.54738 7.73162 7.78561 7.94976 8.43949 8.60991 9.21371 9.59300 10.60094 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.007554 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541455 B = 3705.967723 C = 4754.609688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.084 3.916 3 C -0.159 4.159 4 C 0.128 3.872 5 N -0.452 5.452 6 C -0.294 4.294 7 H 0.093 0.907 8 C 0.026 3.974 9 N -0.879 5.879 10 Si 0.924 3.076 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.156 3.844 15 C -0.188 4.188 16 C -0.089 4.089 17 C -0.174 4.174 18 C 0.123 3.877 19 N -0.848 5.848 20 C -0.076 4.076 21 C 0.016 3.984 22 O -0.318 6.318 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.330 0.670 37 H 0.339 0.661 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 1.966 6.998 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.045 3.955 3 C -0.217 4.217 4 C 0.004 3.996 5 N -0.141 5.141 6 C -0.422 4.422 7 H 0.111 0.889 8 C -0.178 4.178 9 N -0.515 5.515 10 Si 0.751 3.249 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.042 3.958 15 C -0.212 4.212 16 C -0.109 4.109 17 C -0.179 4.179 18 C -0.007 4.007 19 N -0.377 5.377 20 C -0.097 4.097 21 C -0.033 4.033 22 O -0.233 6.233 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.275 2.209 6.631 6.995 hybrid contribution 1.425 -0.205 -1.218 1.886 sum 1.150 2.004 5.413 5.885 Atomic orbital electron populations 1.21637 0.92265 1.02701 1.02069 1.22279 0.94446 0.91963 0.86857 1.22208 1.02713 0.95586 1.01197 1.22107 0.81531 0.99908 0.96091 1.42604 1.03557 1.63467 1.04504 1.19517 0.99255 1.40421 0.83032 0.88911 1.25346 0.96950 0.96374 0.99112 1.69992 1.22702 1.34858 1.23995 0.85885 0.79216 0.78828 0.80996 1.19274 1.20656 1.20564 1.18147 0.93372 0.98250 0.86047 1.20272 0.93969 1.09604 0.97361 1.20443 0.97706 1.00727 0.92032 1.18718 0.93282 1.12492 0.93392 1.20399 0.97083 0.89666 0.93552 1.58817 1.45397 1.26257 1.07208 1.19796 0.93619 1.02264 0.93996 1.18194 0.83490 1.09097 0.92557 1.85903 1.21436 1.73780 1.42200 0.92119 0.90941 0.91862 0.91609 0.91944 0.92841 0.88195 0.92279 0.92017 0.86461 0.88249 0.91487 0.95985 0.85861 0.84817 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.87 37.16 0.33 -1.75 16 2 C 0.08 1.68 1.12 -90.34 -0.10 1.58 16 3 C -0.16 -3.03 8.45 37.16 0.31 -2.72 16 4 C 0.13 2.98 3.91 -3.34 -0.01 2.97 16 5 N -0.45 -11.29 2.42 -112.07 -0.27 -11.56 16 6 C -0.29 -7.57 8.82 -15.14 -0.13 -7.71 16 7 H 0.09 2.35 6.94 -52.49 -0.36 1.99 16 8 C 0.03 0.65 5.02 -17.45 -0.09 0.56 16 9 N -0.88 -22.97 11.09 55.49 0.62 -22.36 16 10 Si 0.92 19.67 29.58 -169.99 -5.03 14.64 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.16 3.73 5.67 -83.55 -0.47 3.26 16 15 C -0.19 -4.18 9.25 -39.39 -0.36 -4.54 16 16 C -0.09 -1.72 9.69 -39.57 -0.38 -2.10 16 17 C -0.17 -3.24 5.39 -104.58 -0.56 -3.80 16 18 C 0.12 1.82 6.90 -4.97 -0.03 1.78 16 19 N -0.85 -11.37 9.61 -11.40 -0.11 -11.48 16 20 C -0.08 -1.56 9.62 -39.42 -0.38 -1.94 16 21 C 0.02 0.35 6.03 -38.98 -0.24 0.12 16 22 O -0.32 -6.97 9.73 -19.34 -0.19 -7.16 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.42 6.76 -51.93 -0.35 1.06 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 2.42 6.53 -51.93 -0.34 2.08 16 30 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 32 H 0.12 2.64 6.73 -52.49 -0.35 2.28 16 33 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.33 3.47 9.08 -39.29 -0.36 3.12 16 37 H 0.34 4.42 8.99 -39.29 -0.35 4.07 16 38 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -27.82 306.96 -7.96 -35.78 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.47 Total: 11.80 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.13 Total: -14.29 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.23 Total: -45.39 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.19 Total: -7.16 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.82 -7.96 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074337643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.818 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds