Wall clock time and date at job start Mon Mar 30 2020 04:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.69966 * 2 1 4 4 C 1.53529 * 109.58649 * 239.65154 * 2 1 3 5 5 N 1.47286 * 107.61547 * 182.08296 * 4 2 1 6 6 C 1.36806 * 121.12686 * 222.35705 * 5 4 2 7 7 H 1.07997 * 119.99925 * 154.95418 * 6 5 4 8 8 C 1.38769 * 119.99977 * 334.95759 * 6 5 4 9 9 N 1.31614 * 120.00247 * 345.49075 * 8 6 5 10 10 Si 1.86801 * 119.99857 * 165.49498 * 8 6 5 11 11 H 1.48499 * 109.47346 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47487 * 119.99798 * 10 8 6 13 13 H 1.48500 * 109.46904 * 239.99771 * 10 8 6 14 14 C 1.39813 * 117.74493 * 42.08648 * 5 4 2 15 15 C 1.38824 * 120.09287 * 166.09294 * 14 5 4 16 16 C 1.38166 * 119.85368 * 179.83707 * 15 14 5 17 17 C 1.38342 * 120.09624 * 359.96748 * 16 15 14 18 18 C 1.50703 * 119.83126 * 180.09867 * 17 16 15 19 19 N 1.46908 * 109.46800 * 89.99969 * 18 17 16 20 20 C 1.38237 * 120.34096 * 0.07716 * 17 16 15 21 21 C 1.38664 * 120.05714 * 0.04842 * 20 17 16 22 22 O 1.35874 * 119.67351 * 179.58951 * 21 20 17 23 23 H 1.09001 * 109.47045 * 299.64742 * 1 2 3 24 24 H 1.09004 * 109.46935 * 59.64806 * 1 2 3 25 25 H 1.08994 * 109.47180 * 179.64493 * 1 2 3 26 26 H 1.09000 * 109.46988 * 180.35471 * 3 2 1 27 27 H 1.09000 * 109.46949 * 300.35138 * 3 2 1 28 28 H 1.09000 * 109.46594 * 60.35139 * 3 2 1 29 29 H 1.09006 * 109.83018 * 62.55336 * 4 2 1 30 30 H 1.08998 * 109.83112 * 301.60889 * 4 2 1 31 31 H 0.96998 * 119.99783 * 185.29082 * 9 8 6 32 32 H 1.07998 * 120.06706 * 359.86128 * 15 14 5 33 33 H 1.08004 * 119.94809 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.47218 * 210.00067 * 18 17 16 35 35 H 1.09000 * 109.47079 * 330.00317 * 18 17 16 36 36 H 1.00905 * 110.99649 * 180.02562 * 19 18 17 37 37 H 1.00899 * 111.00141 * 303.95405 * 19 18 17 38 38 H 1.07999 * 119.96884 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4405 0.0000 4 6 2.0447 -0.7308 -1.2482 5 7 3.5158 -0.7494 -1.1790 6 6 4.2791 -0.5018 -2.2870 7 1 5.2843 -0.1229 -2.1765 8 6 3.7616 -0.7374 -3.5529 9 7 2.6675 -1.4554 -3.6934 10 14 4.6180 -0.0357 -5.0574 11 1 5.8179 0.7290 -4.6324 12 1 5.0295 -1.1447 -5.9551 13 1 3.6869 0.8671 -5.7808 14 6 4.1057 -1.0230 0.0587 15 6 5.4558 -1.3378 0.1318 16 6 6.0345 -1.6040 1.3579 17 6 5.2708 -1.5565 2.5104 18 6 5.9086 -1.8457 3.8449 19 7 6.4197 -0.5962 4.4244 20 6 3.9257 -1.2446 2.4444 21 6 3.3338 -0.9782 1.2191 22 8 2.0093 -0.6806 1.1624 23 1 -0.3633 0.5084 0.8931 24 1 -0.3633 0.5193 -0.8868 25 1 -0.3633 -1.0276 -0.0064 26 1 3.1357 1.4362 -0.0064 27 1 1.6793 1.9576 -0.8868 28 1 1.6896 1.9539 0.8931 29 1 1.7233 -0.2016 -2.1454 30 1 1.6623 -1.7514 -1.2631 31 1 2.3486 -1.6847 -4.5803 32 1 6.0525 -1.3741 -0.7676 33 1 7.0846 -1.8495 1.4166 34 1 5.1673 -2.2806 4.5152 35 1 6.7320 -2.5470 3.7096 36 1 6.8529 -0.7638 5.3202 37 1 7.0609 -0.1404 3.7926 38 1 3.3352 -1.2087 3.3480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074337643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:29 Heat of formation + Delta-G solvation = -20.376010 kcal Electronic energy + Delta-G solvation = -20463.338712 eV Core-core repulsion = 17498.093081 eV Total energy + Delta-G solvation = -2965.245631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69266 -38.87377 -37.40526 -35.44666 -34.26681 -33.27394 -30.94005 -29.69780 -28.29676 -28.10208 -26.27396 -24.12700 -23.38978 -22.68445 -19.82356 -19.19923 -18.65783 -17.16668 -17.07791 -16.68114 -16.39093 -15.69644 -15.47091 -15.33492 -15.19221 -15.01265 -14.43643 -14.12031 -13.72660 -13.54319 -13.34227 -13.29308 -13.04164 -12.92218 -12.82702 -12.63573 -12.45352 -12.27562 -12.10829 -11.83747 -11.50282 -11.16778 -11.14273 -10.33130 -9.46475 -9.12750 -8.36934 -8.21108 -5.70915 0.76966 0.82671 1.39276 1.41355 1.52044 2.21665 2.49247 2.86572 3.09524 3.23975 3.80750 3.96924 4.03232 4.05779 4.14812 4.23423 4.39832 4.59994 4.66021 4.70476 4.72464 4.79699 4.86739 4.89972 4.94739 5.05645 5.11701 5.14687 5.32133 5.35071 5.39938 5.59713 5.72197 5.93366 6.03065 6.21472 6.38061 6.64446 6.77668 6.82001 7.38068 7.75099 8.73245 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.007554 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.541455 B = 3705.967723 C = 4754.609688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.082 3.918 3 C -0.150 4.150 4 C 0.141 3.859 5 N -0.478 5.478 6 C -0.311 4.311 7 H 0.085 0.915 8 C -0.017 4.017 9 N -0.912 5.912 10 Si 0.989 3.011 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.127 3.873 15 C -0.203 4.203 16 C -0.087 4.087 17 C -0.154 4.154 18 C 0.126 3.874 19 N -0.854 5.854 20 C -0.084 4.084 21 C 0.000 4.000 22 O -0.325 6.325 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.025 0.975 31 H 0.269 0.731 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.350 0.650 37 H 0.343 0.657 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 2.498 8.932 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.043 3.957 3 C -0.207 4.207 4 C 0.016 3.984 5 N -0.171 5.171 6 C -0.439 4.439 7 H 0.103 0.897 8 C -0.217 4.217 9 N -0.550 5.550 10 Si 0.813 3.187 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.016 3.984 15 C -0.228 4.228 16 C -0.106 4.106 17 C -0.158 4.158 18 C -0.004 4.004 19 N -0.386 5.386 20 C -0.104 4.104 21 C -0.049 4.049 22 O -0.241 6.241 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.515 2.739 8.629 9.068 hybrid contribution 1.294 -0.431 -1.572 2.082 sum 1.809 2.308 7.057 7.642 Atomic orbital electron populations 1.21662 0.89121 1.03268 1.04006 1.22498 0.96683 0.91801 0.84722 1.22111 1.00631 0.95191 1.02777 1.21857 0.81252 0.98110 0.97160 1.42655 1.03873 1.65846 1.04714 1.19645 0.99357 1.40893 0.84009 0.89716 1.26103 0.97712 0.96552 1.01353 1.70112 1.24135 1.36421 1.24361 0.84913 0.78276 0.78006 0.77495 1.18808 1.20584 1.20087 1.18555 0.94321 0.99191 0.86293 1.20442 0.93621 1.10275 0.98426 1.20771 0.99354 0.99503 0.90966 1.19246 0.92593 1.08762 0.95225 1.20389 0.97917 0.90733 0.91392 1.58701 1.46129 1.25464 1.08279 1.20162 0.94680 1.01864 0.93724 1.18547 0.83864 1.09453 0.93012 1.85883 1.21233 1.74182 1.42753 0.89816 0.89280 0.92056 0.94680 0.90845 0.90622 0.89821 0.95675 0.92102 0.87660 0.84992 0.90467 0.93902 0.83608 0.84473 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 8.87 71.98 0.64 -3.20 16 2 C 0.08 3.31 1.12 -10.61 -0.01 3.30 16 3 C -0.15 -5.65 8.45 71.99 0.61 -5.04 16 4 C 0.14 6.87 3.91 86.41 0.34 7.21 16 5 N -0.48 -24.98 2.42 -508.49 -1.23 -26.21 16 6 C -0.31 -16.74 8.82 84.04 0.74 -15.99 16 7 H 0.09 4.52 6.94 -2.91 -0.02 4.50 16 8 C -0.02 -0.90 5.02 84.85 0.43 -0.48 16 9 N -0.91 -49.73 11.09 21.64 0.24 -49.49 16 10 Si 0.99 41.43 29.58 68.60 2.03 43.46 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 14 C 0.13 6.26 5.67 38.30 0.22 6.48 16 15 C -0.20 -9.16 9.25 22.39 0.21 -8.96 16 16 C -0.09 -3.17 9.69 22.28 0.22 -2.96 16 17 C -0.15 -5.33 5.39 -19.84 -0.11 -5.43 16 18 C 0.13 3.21 6.90 85.56 0.59 3.80 16 19 N -0.85 -19.58 9.61 -189.99 -1.83 -21.41 16 20 C -0.08 -3.30 9.62 22.37 0.22 -3.09 16 21 C 0.00 0.01 6.03 22.66 0.14 0.15 16 22 O -0.32 -14.25 9.73 -92.13 -0.90 -15.15 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.52 6.76 -2.39 -0.02 1.50 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.08 4.26 6.53 -2.38 -0.02 4.25 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 32 H 0.11 4.91 6.73 -2.91 -0.02 4.89 16 33 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.35 5.92 9.08 -89.69 -0.81 5.11 16 37 H 0.34 7.68 8.99 -89.69 -0.81 6.87 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.15 306.96 1.99 -60.16 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.54 Total: 32.84 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.22 Total: -24.22 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.82 Total: -97.10 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.90 Total: -15.15 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -62.15 1.99 -60.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074337643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.785 kcal (2) G-P(sol) polarization free energy of solvation -62.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds