Wall clock time and date at job start Mon Mar 30 2020 04:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46857 * 2 1 4 4 N 1.46496 * 109.47051 * 119.99791 * 2 1 3 5 5 C 1.36936 * 120.00218 * 301.99606 * 4 2 1 6 6 H 1.08003 * 119.99627 * 319.40143 * 5 4 2 7 7 C 1.38808 * 120.00223 * 139.41036 * 5 4 2 8 8 N 1.31620 * 120.00153 * 160.39294 * 7 5 4 9 9 Si 1.86807 * 119.99931 * 340.38953 * 7 5 4 10 10 H 1.48503 * 109.46883 * 95.26044 * 9 7 5 11 11 H 1.48503 * 109.47035 * 215.25648 * 9 7 5 12 12 H 1.48497 * 109.46961 * 335.25944 * 9 7 5 13 13 C 1.46504 * 119.99779 * 121.99440 * 4 2 1 14 14 C 1.50703 * 109.47353 * 90.00223 * 13 4 2 15 15 O 1.21283 * 119.99480 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99782 * 179.97438 * 14 13 4 17 17 C 1.39923 * 119.99605 * 184.53081 * 16 14 13 18 18 C 1.38873 * 120.07207 * 31.81453 * 17 16 14 19 19 C 1.38110 * 119.92824 * 179.97438 * 18 17 16 20 20 C 1.38280 * 120.07473 * 359.97438 * 19 18 17 21 21 C 1.38281 * 120.13938 * 0.04399 * 20 19 18 22 22 C 1.38120 * 120.07098 * 359.96033 * 21 20 19 23 23 H 1.08992 * 109.47391 * 305.36023 * 1 2 3 24 24 H 1.09006 * 109.46813 * 65.36285 * 1 2 3 25 25 H 1.08997 * 109.47169 * 185.35692 * 1 2 3 26 26 H 1.08999 * 109.47232 * 240.00403 * 2 1 3 27 27 H 1.09003 * 109.46926 * 184.35139 * 3 2 1 28 28 H 1.08999 * 109.47531 * 304.34955 * 3 2 1 29 29 H 1.09003 * 109.47149 * 64.35620 * 3 2 1 30 30 H 0.97003 * 120.00098 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47480 * 329.99560 * 13 4 2 32 32 H 1.09004 * 109.47165 * 209.99963 * 13 4 2 33 33 H 0.96999 * 120.00184 * 4.53174 * 16 14 13 34 34 H 1.08003 * 120.03438 * 359.69624 * 18 17 16 35 35 H 1.08003 * 119.96621 * 179.97438 * 19 18 17 36 36 H 1.07995 * 119.93135 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.96680 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.03617 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6541 -0.2470 2.4395 6 1 1.6148 0.8126 2.6446 7 6 1.3357 -1.1592 3.4361 8 7 1.3634 -0.7904 4.6992 9 14 0.8676 -2.9104 2.9845 10 1 2.0675 -3.7813 3.0703 11 1 -0.1702 -3.4037 3.9252 12 1 0.3337 -2.9385 1.5991 13 6 2.8963 -1.8557 1.0622 14 6 4.3334 -1.4025 1.0448 15 8 4.5982 -0.2223 1.1350 16 7 5.3244 -2.3086 0.9291 17 6 6.6599 -1.8987 1.0082 18 6 7.0103 -0.8197 1.8090 19 6 8.3295 -0.4179 1.8853 20 6 9.3010 -1.0891 1.1657 21 6 8.9553 -2.1637 0.3670 22 6 7.6378 -2.5704 0.2864 23 1 -0.3634 0.5947 0.8380 24 1 -0.3633 0.4284 -0.9342 25 1 -0.3633 -1.0231 0.0959 26 1 1.8934 -0.5138 -0.8900 27 1 3.1272 1.4435 -0.0780 28 1 1.6144 1.9784 -0.8484 29 1 1.7417 1.9333 0.9265 30 1 1.1405 -1.4278 5.3956 31 1 2.6685 -2.3773 0.1327 32 1 2.7378 -2.5289 1.9047 33 1 5.1118 -3.2449 0.7910 34 1 6.2514 -0.2924 2.3681 35 1 8.6027 0.4215 2.5076 36 1 10.3319 -0.7732 1.2274 37 1 9.7163 -2.6857 -0.1941 38 1 7.3683 -3.4095 -0.3379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080229147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:34 Heat of formation + Delta-G solvation = 19.043886 kcal Electronic energy + Delta-G solvation = -20004.670286 eV Core-core repulsion = 17041.134030 eV Total energy + Delta-G solvation = -2963.536256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01929 -38.14244 -36.34042 -34.20268 -32.37578 -31.01450 -30.69624 -29.32076 -26.57293 -26.22802 -23.69555 -22.67390 -22.04540 -20.03519 -19.44596 -17.74650 -16.72021 -16.33020 -15.79839 -15.38408 -14.82390 -14.67010 -14.01112 -13.82940 -13.36522 -13.28864 -13.11745 -12.69732 -12.58498 -12.20863 -12.01553 -11.69798 -11.44874 -11.32952 -11.05545 -10.83527 -10.67921 -10.40883 -10.22569 -10.00093 -9.90815 -9.54362 -9.16383 -8.72975 -8.55081 -7.80022 -6.85479 -6.02209 -3.48423 1.50328 1.60136 3.16389 3.25393 3.38696 3.43280 3.49373 4.06533 4.43230 4.84677 5.02374 5.09807 5.25301 5.31286 5.45729 5.59903 5.77224 5.82850 5.87149 5.88299 6.02942 6.19786 6.20450 6.24926 6.39955 6.52798 6.56579 6.62096 6.72704 6.75503 6.79145 6.83570 7.15051 7.26257 7.33039 7.79846 8.03405 8.42265 8.76242 8.95961 9.64902 10.04132 11.12937 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.006249 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.755349 B = 4479.506354 C = 4903.541130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 C -0.154 4.154 4 N -0.574 5.574 5 C -0.253 4.253 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.897 5.897 9 Si 0.869 3.131 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.264 1.264 13 C 0.119 3.881 14 C 0.482 3.518 15 O -0.493 6.493 16 N -0.691 5.691 17 C 0.162 3.838 18 C -0.125 4.125 19 C -0.100 4.100 20 C -0.150 4.150 21 C -0.104 4.104 22 C -0.160 4.160 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.404 0.596 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 -4.992 -9.647 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 C -0.213 4.213 4 N -0.294 5.294 5 C -0.382 4.382 6 H 0.099 0.901 7 C -0.166 4.166 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.188 1.188 13 C -0.012 4.012 14 C 0.268 3.732 15 O -0.364 6.364 16 N -0.338 5.338 17 C 0.066 3.934 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.169 4.169 21 C -0.123 4.123 22 C -0.181 4.181 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.239 0.761 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.484 -4.105 -9.384 13.959 hybrid contribution -0.195 -1.569 -0.044 1.582 sum 9.290 -5.675 -9.428 14.401 Atomic orbital electron populations 1.22093 0.97216 1.01411 1.00202 1.20413 0.92480 0.92599 0.87962 1.22128 1.01149 0.97546 1.00445 1.43887 1.49390 1.32730 1.03386 1.18673 1.40371 0.93656 0.85480 0.90129 1.25556 0.98059 0.97796 0.95207 1.69854 1.49348 1.35583 0.98950 0.87027 0.78102 0.86130 0.78830 1.21538 1.22535 1.18808 1.21457 0.85678 0.92800 1.01274 1.23376 0.88844 0.86563 0.74459 1.90612 1.83841 1.17077 1.44902 1.44253 1.03833 1.11998 1.73670 1.17960 0.84273 0.96130 0.94991 1.21381 0.96919 0.97718 0.98467 1.21057 0.92549 0.99343 0.98937 1.21027 0.99149 0.97342 0.99430 1.20843 0.95387 0.97085 0.98990 1.20857 0.93126 1.02732 1.01384 0.91842 0.94275 0.93434 0.93533 0.92704 0.94638 0.92222 0.92672 0.91044 0.89922 0.76144 0.84150 0.86063 0.86518 0.86276 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.04 37.16 0.34 -2.47 16 2 C 0.17 3.43 3.36 -67.93 -0.23 3.20 16 3 C -0.15 -3.04 9.26 37.16 0.34 -2.70 16 4 N -0.57 -13.22 1.46 -167.02 -0.24 -13.47 16 5 C -0.25 -6.88 8.68 -15.06 -0.13 -7.01 16 6 H 0.08 2.44 7.02 -52.48 -0.37 2.07 16 7 C 0.03 0.96 5.33 -17.43 -0.09 0.87 16 8 N -0.90 -26.96 13.97 55.49 0.78 -26.18 16 9 Si 0.87 20.77 25.00 -169.99 -4.25 16.53 16 10 H -0.29 -6.53 6.71 56.52 0.38 -6.15 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.12 2.42 4.93 -5.19 -0.03 2.40 16 14 C 0.48 9.72 7.66 -10.98 -0.08 9.64 16 15 O -0.49 -11.61 13.19 5.55 0.07 -11.53 16 16 N -0.69 -11.24 5.35 -9.86 -0.05 -11.29 16 17 C 0.16 2.64 6.31 -83.69 -0.53 2.11 16 18 C -0.12 -2.19 8.67 -39.39 -0.34 -2.53 16 19 C -0.10 -1.46 10.04 -39.61 -0.40 -1.86 16 20 C -0.15 -1.88 10.04 -39.55 -0.40 -2.28 16 21 C -0.10 -1.25 10.04 -39.61 -0.40 -1.65 16 22 C -0.16 -2.11 9.96 -39.39 -0.39 -2.51 16 23 H 0.06 1.29 7.80 -51.93 -0.40 0.88 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.84 7.78 -51.93 -0.40 0.44 16 27 H 0.05 1.16 7.34 -51.93 -0.38 0.78 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.29 6.92 -51.93 -0.36 0.93 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 32 H 0.08 1.79 3.46 -51.93 -0.18 1.62 16 33 H 0.40 5.12 8.81 -40.82 -0.36 4.76 16 34 H 0.14 2.90 6.27 -52.48 -0.33 2.57 16 35 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -31.89 311.50 -6.65 -38.54 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.31 Total: 7.51 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.34 Total: -4.79 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.48 Total: -50.94 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.25 Total: 16.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.89 -6.65 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080229147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.583 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds