Wall clock time and date at job start Mon Mar 30 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46689 * 2 1 4 4 N 1.46900 * 109.46673 * 240.00378 * 2 1 3 5 5 C 1.52993 * 109.47277 * 120.00152 * 2 1 3 6 6 C 1.50701 * 109.47470 * 299.99976 * 5 2 1 7 7 O 1.21284 * 119.99714 * 0.02562 * 6 5 2 8 8 N 1.34768 * 120.00508 * 180.02562 * 6 5 2 9 9 C 1.39236 * 120.00528 * 184.29432 * 8 6 5 10 10 C 1.39480 * 119.82715 * 324.70481 * 9 8 6 11 11 C 1.36381 * 120.16549 * 180.29896 * 10 9 8 12 12 C 1.40869 * 119.82848 * 359.47804 * 11 10 9 13 13 C 1.41154 * 120.16334 * 180.25024 * 12 11 10 14 14 H 1.07993 * 120.00018 * 215.01626 * 13 12 11 15 15 C 1.39908 * 119.99870 * 35.01821 * 13 12 11 16 16 N 1.30873 * 120.00086 * 355.54709 * 15 13 12 17 17 Si 1.86795 * 119.99875 * 175.54325 * 15 13 12 18 18 H 1.48503 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47373 * 119.99926 * 17 15 13 20 20 H 1.48499 * 109.47238 * 240.00241 * 17 15 13 21 21 C 1.40869 * 119.67126 * 0.51736 * 12 11 10 22 22 C 1.36377 * 119.82778 * 359.73663 * 21 12 11 23 23 H 1.08996 * 109.47181 * 299.99442 * 1 2 3 24 24 H 1.08997 * 109.47422 * 60.00053 * 1 2 3 25 25 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46890 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47611 * 299.99860 * 3 2 1 28 28 H 1.08997 * 109.47299 * 60.00651 * 3 2 1 29 29 H 1.00896 * 111.00201 * 296.03859 * 4 2 1 30 30 H 1.00900 * 111.00242 * 59.99755 * 4 2 1 31 31 H 1.09005 * 109.46900 * 180.02562 * 5 2 1 32 32 H 1.08996 * 109.47295 * 60.00041 * 5 2 1 33 33 H 0.97005 * 120.00034 * 4.28252 * 8 6 5 34 34 H 1.08000 * 119.92230 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.08522 * 179.70111 * 11 10 9 36 36 H 0.96996 * 119.99711 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.08620 * 179.70804 * 21 12 11 38 38 H 1.07996 * 119.91582 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7212 1.2492 6 6 1.5378 -0.0109 2.4797 7 8 0.8401 0.9749 2.3685 8 7 1.8638 -0.4711 3.7037 9 6 1.3278 0.1305 4.8393 10 6 1.1069 1.5076 4.8561 11 6 0.5879 2.1050 5.9669 12 6 0.2645 1.3258 7.0950 13 6 -0.2779 1.9360 8.2465 14 1 -0.0228 1.5618 9.2269 15 6 -1.1461 3.0255 8.1177 16 7 -1.3870 3.5342 6.9362 17 14 -1.9615 3.7541 9.6321 18 1 -1.5277 3.0030 10.8376 19 1 -1.5685 5.1796 9.7685 20 1 -3.4370 3.6584 9.4943 21 6 0.4904 -0.0644 7.0704 22 6 1.0149 -0.6467 5.9543 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.7502 -1.6647 -1.1910 30 1 1.6960 -0.2349 -2.0386 31 1 3.1301 -0.7208 1.2493 32 1 1.6767 -1.7489 1.2492 33 1 2.4718 -1.2216 3.7937 34 1 1.3516 2.1031 3.9890 35 1 0.4220 3.1721 5.9802 36 1 -1.9886 4.2898 6.8470 37 1 0.2493 -0.6675 7.9333 38 1 1.1890 -1.7124 5.9340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084167467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:45 Heat of formation + Delta-G solvation = -40.120220 kcal Electronic energy + Delta-G solvation = -19486.897364 eV Core-core repulsion = 16520.795560 eV Total energy + Delta-G solvation = -2966.101804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44567 -39.41418 -37.70059 -36.04991 -34.67626 -31.59280 -31.21035 -30.45085 -29.03129 -28.15536 -26.54443 -23.34022 -22.92809 -21.37317 -20.30576 -19.22015 -18.27336 -17.83184 -17.03651 -16.58482 -16.37097 -15.79755 -15.76110 -15.04594 -14.85766 -14.69231 -14.20134 -14.11225 -13.85277 -13.69608 -13.33844 -13.02719 -12.87478 -12.79323 -12.65916 -12.36265 -12.28511 -12.06461 -11.78417 -11.68416 -11.63997 -11.14612 -10.60846 -10.30358 -9.61687 -9.43077 -8.71237 -8.49256 -6.32137 0.83391 1.14267 1.38519 1.44058 1.54358 1.85732 2.23523 2.37261 2.82720 3.61190 3.70954 3.73944 3.94478 4.13312 4.29880 4.45200 4.50572 4.61634 4.70551 4.78022 4.95788 5.01240 5.04895 5.11008 5.14805 5.20077 5.34053 5.39302 5.43657 5.54200 5.72631 5.89653 6.11251 6.17207 6.27022 6.37821 6.65222 6.72404 6.79134 6.97293 7.04020 7.50173 8.43939 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.004291 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.126456 B = 6523.928291 C = 7011.550388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.136 3.864 3 C -0.149 4.149 4 N -0.835 5.835 5 C -0.116 4.116 6 C 0.496 3.504 7 O -0.557 6.557 8 N -0.647 5.647 9 C 0.024 3.976 10 C -0.108 4.108 11 C -0.168 4.168 12 C 0.064 3.936 13 C -0.498 4.498 14 H 0.078 0.922 15 C 0.023 3.977 16 N -0.848 5.848 17 Si 0.990 3.010 18 H -0.254 1.254 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.210 4.210 22 C -0.110 4.110 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.349 0.651 30 H 0.349 0.651 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.281 0.719 37 H 0.111 0.889 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -9.287 -11.157 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.043 3.957 3 C -0.206 4.206 4 N -0.366 5.366 5 C -0.156 4.156 6 C 0.285 3.715 7 O -0.436 6.436 8 N -0.293 5.293 9 C -0.069 4.069 10 C -0.128 4.128 11 C -0.189 4.189 12 C 0.062 3.938 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.476 5.476 17 Si 0.811 3.189 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.230 4.230 22 C -0.130 4.130 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.774 -8.260 -11.132 15.017 hybrid contribution -1.426 0.286 0.453 1.523 sum 4.348 -7.974 -10.680 14.020 Atomic orbital electron populations 1.22793 0.97464 1.01811 1.02789 1.20266 0.91745 0.93936 0.89800 1.21994 1.00942 0.95474 1.02210 1.58876 1.67173 1.07103 1.03416 1.21615 1.03924 1.00564 0.89540 1.21341 0.79966 0.84846 0.85369 1.90615 1.39117 1.27466 1.86415 1.42970 1.47127 1.35462 1.03715 1.17367 1.09347 0.91308 0.88915 1.20672 1.00992 0.93926 0.97185 1.21177 1.02930 0.99867 0.94896 1.18053 0.89947 0.92013 0.93789 1.19790 1.25553 1.13391 0.94187 0.90385 1.26822 0.96348 0.95419 1.00229 1.69917 1.30911 1.21029 1.25775 0.85040 0.77928 0.78256 0.77701 1.17756 1.19262 1.19482 1.20959 1.08820 0.94130 0.99093 1.20453 1.00800 0.98798 0.92990 0.92467 0.92607 0.92317 0.92330 0.92777 0.92317 0.83710 0.83721 0.86463 0.86570 0.74480 0.88225 0.87918 0.90830 0.87127 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.71 8.46 71.98 0.61 -4.10 16 2 C 0.14 2.97 0.97 3.53 0.00 2.97 16 3 C -0.15 -3.87 8.47 71.98 0.61 -3.26 16 4 N -0.83 -13.20 8.88 -151.57 -1.35 -14.54 16 5 C -0.12 -2.42 5.03 29.85 0.15 -2.27 16 6 C 0.50 15.72 7.07 87.66 0.62 16.34 16 7 O -0.56 -22.85 8.77 -3.04 -0.03 -22.88 16 8 N -0.65 -20.46 5.30 -303.12 -1.61 -22.07 16 9 C 0.02 1.04 6.31 38.56 0.24 1.28 16 10 C -0.11 -5.46 8.61 22.14 0.19 -5.27 16 11 C -0.17 -9.51 8.61 22.48 0.19 -9.31 16 12 C 0.06 3.56 5.55 -21.28 -0.12 3.45 16 13 C -0.50 -27.62 9.02 23.39 0.21 -27.41 16 14 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 15 C 0.02 1.21 5.42 85.24 0.46 1.67 16 16 N -0.85 -47.65 10.61 21.82 0.23 -47.41 16 17 Si 0.99 40.19 29.56 68.60 2.03 42.21 16 18 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 22 C -0.11 -4.56 9.90 22.13 0.22 -4.34 16 23 H 0.06 1.92 5.51 -2.39 -0.01 1.91 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.96 5.51 -2.39 -0.01 1.95 16 29 H 0.35 4.21 8.98 -89.70 -0.81 3.40 16 30 H 0.35 4.90 9.00 -89.69 -0.81 4.10 16 31 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.42 9.36 8.82 -92.70 -0.82 8.54 16 34 H 0.10 5.14 6.22 -2.91 -0.02 5.12 16 35 H 0.10 6.24 6.15 -2.91 -0.02 6.22 16 36 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 37 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -68.05 308.91 1.57 -66.49 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -1.33 Total: 38.32 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.61 Total: -40.12 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.72 Total: -84.03 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.03 Total: -22.88 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -68.05 1.57 -66.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084167467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds