Wall clock time and date at job start Mon Mar 30 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.08999 * 109.47261 * 305.00148 * 3 2 1 5 5 C 1.53006 * 109.47217 * 65.00199 * 3 2 1 6 6 N 1.46897 * 109.47229 * 184.99963 * 5 3 2 7 7 C 1.50702 * 109.47371 * 185.00084 * 3 2 1 8 8 O 1.21284 * 119.99558 * 0.02562 * 7 3 2 9 9 N 1.34770 * 120.00201 * 180.02562 * 7 3 2 10 10 C 1.39235 * 120.00022 * 174.86725 * 9 7 3 11 11 C 1.39480 * 119.83491 * 325.36007 * 10 9 7 12 12 C 1.36378 * 120.16999 * 179.75940 * 11 10 9 13 13 C 1.40865 * 119.82767 * 0.51534 * 12 11 10 14 14 C 1.41155 * 120.16040 * 179.71664 * 13 12 11 15 15 H 1.08003 * 119.99420 * 205.35332 * 14 13 12 16 16 C 1.39897 * 120.00301 * 25.36288 * 14 13 12 17 17 N 1.30873 * 120.00056 * 16.82967 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 196.83094 * 16 14 13 19 19 H 1.48501 * 109.46689 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46985 * 119.99423 * 18 16 14 21 21 H 1.48499 * 109.47336 * 239.99801 * 18 16 14 22 22 C 1.40865 * 119.67289 * 359.74186 * 13 12 11 23 23 C 1.36374 * 119.82904 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46854 * 299.99450 * 1 2 3 25 25 H 1.08997 * 109.47059 * 59.99757 * 1 2 3 26 26 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46854 * 240.00550 * 2 1 3 28 28 H 1.08997 * 109.47059 * 120.00242 * 2 1 3 29 29 H 1.08999 * 109.46847 * 305.00180 * 5 3 2 30 30 H 1.08999 * 109.47290 * 64.99790 * 5 3 2 31 31 H 1.00903 * 110.99976 * 56.04645 * 6 5 3 32 32 H 1.00899 * 110.99879 * 180.02562 * 6 5 3 33 33 H 0.96999 * 120.00071 * 354.86329 * 9 7 3 34 34 H 1.08005 * 119.91250 * 0.02562 * 11 10 9 35 35 H 1.08003 * 120.08106 * 180.25407 * 12 11 10 36 36 H 0.97004 * 120.00310 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.08831 * 179.97438 * 22 13 12 38 38 H 1.08002 * 119.91806 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 2.0194 3.5435 1.2580 7 6 3.5419 1.4444 -0.1239 8 8 4.1450 0.3952 -0.2047 9 7 4.2149 2.6118 -0.1448 10 6 5.6072 2.6128 -0.1513 11 6 6.3051 1.6284 0.5482 12 6 7.6689 1.6199 0.5424 13 6 8.3727 2.6151 -0.1636 14 6 9.7842 2.6166 -0.1694 15 1 10.3226 3.5385 -0.3325 16 6 10.4858 1.4238 0.0360 17 7 9.8742 0.2741 -0.0942 18 14 12.2957 1.4720 0.4959 19 1 12.7475 2.8842 0.5801 20 1 12.4898 0.8115 1.8117 21 1 13.0884 0.7589 -0.5377 22 6 7.6609 3.6092 -0.8633 23 6 6.2973 3.6012 -0.8531 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5563 2.0470 1.4402 30 1 2.1408 1.6420 2.1427 31 1 1.6146 4.0001 0.4544 32 1 1.7630 4.0176 2.1110 33 1 3.7293 3.4515 -0.1554 34 1 5.7640 0.8683 1.0924 35 1 8.2078 0.8546 1.0812 36 1 10.3606 -0.5530 0.0486 37 1 8.1938 4.3756 -1.4065 38 1 5.7501 4.3629 -1.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087519740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:11 Heat of formation + Delta-G solvation = -28.343053 kcal Electronic energy + Delta-G solvation = -19420.368363 eV Core-core repulsion = 16454.777255 eV Total energy + Delta-G solvation = -2965.591108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76128 -37.42707 -35.90082 -34.37416 -33.08146 -32.50684 -29.43863 -29.09742 -27.92028 -24.87309 -23.79679 -22.00032 -21.15927 -20.26750 -19.16681 -17.24191 -16.94347 -16.21082 -15.67766 -15.34483 -15.21919 -14.73231 -13.89520 -13.81033 -13.42673 -13.21023 -12.88147 -12.67828 -12.58463 -12.03680 -11.84200 -11.58856 -11.52004 -11.32345 -11.09228 -11.03216 -10.81780 -10.70962 -10.41876 -9.81795 -9.67159 -9.31030 -9.03471 -8.80201 -8.49039 -7.41028 -6.85174 -6.62996 -4.18768 2.69979 3.08085 3.13110 3.18795 3.20352 3.55418 3.95501 4.00967 4.29163 4.73602 4.84780 4.93333 5.04914 5.15095 5.32170 5.37772 5.63469 5.69833 5.79306 5.82309 5.98163 6.15473 6.26623 6.33027 6.49770 6.88049 6.97761 7.12008 7.18275 7.20300 7.29207 7.43239 7.70850 7.84290 8.12199 8.15568 8.35018 8.53997 8.73699 8.98526 9.00144 9.18379 10.29209 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036633 B = 0.004318 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.156612 B = 6483.415278 C = 6927.349943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.106 4.106 4 H 0.088 0.912 5 C 0.070 3.930 6 N -0.850 5.850 7 C 0.504 3.496 8 O -0.539 6.539 9 N -0.635 5.635 10 C 0.005 3.995 11 C -0.087 4.087 12 C -0.154 4.154 13 C 0.103 3.897 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.215 4.215 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.339 0.661 32 H 0.347 0.653 33 H 0.401 0.599 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.279 0.721 37 H 0.094 0.906 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 3.477 2.207 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.128 4.128 4 H 0.106 0.894 5 C -0.061 4.061 6 N -0.380 5.380 7 C 0.290 3.710 8 O -0.417 6.417 9 N -0.279 5.279 10 C -0.087 4.087 11 C -0.107 4.107 12 C -0.174 4.174 13 C 0.101 3.899 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.235 4.235 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.441 2.209 2.114 14.761 hybrid contribution -0.457 0.538 0.184 0.729 sum -14.898 2.747 2.298 15.322 Atomic orbital electron populations 1.21865 0.95912 1.01779 1.01471 1.21287 0.94699 0.94329 1.03985 1.21411 0.94069 0.98494 0.98874 0.89363 1.21808 0.98030 0.88885 0.97414 1.58609 1.67904 1.03123 1.08403 1.20278 0.88900 0.84275 0.77540 1.90706 1.69845 1.31557 1.49581 1.43050 1.05455 1.08372 1.71066 1.17232 0.80944 1.02426 1.08122 1.20409 0.94489 0.97293 0.98552 1.20983 0.92089 1.01735 1.02595 1.17641 0.93347 0.90435 0.88488 1.19545 0.91529 0.94681 1.43396 0.90487 1.25913 1.00763 0.94984 0.92677 1.69876 1.38395 0.98555 1.34927 0.86296 0.82219 0.79511 0.78860 1.18463 1.19786 1.20081 1.20539 0.92646 1.03776 1.06504 1.20042 0.94551 0.98499 0.99780 0.92764 0.92883 0.92490 0.90696 0.91152 0.94253 0.90458 0.84878 0.83975 0.76207 0.88326 0.86357 0.90981 0.88793 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.10 -1.26 4.75 -26.73 -0.13 -1.39 16 3 C -0.11 -1.33 2.40 -91.77 -0.22 -1.55 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.07 0.71 6.03 -3.82 -0.02 0.68 16 6 N -0.85 -7.77 7.34 -10.37 -0.08 -7.85 16 7 C 0.50 9.35 6.87 -10.99 -0.08 9.27 16 8 O -0.54 -12.53 13.66 5.55 0.08 -12.46 16 9 N -0.64 -11.95 4.92 -9.74 -0.05 -12.00 16 10 C 0.01 0.13 6.27 -83.57 -0.52 -0.39 16 11 C -0.09 -2.28 8.57 -39.79 -0.34 -2.62 16 12 C -0.15 -4.29 8.63 -39.26 -0.34 -4.63 16 13 C 0.10 2.87 5.57 -106.80 -0.59 2.28 16 14 C -0.46 -12.65 9.04 -37.85 -0.34 -12.99 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 16 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 17 N -0.79 -21.58 10.94 55.55 0.61 -20.97 16 18 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.21 -5.41 9.74 -39.26 -0.38 -5.80 16 23 C -0.11 -2.51 9.90 -39.79 -0.39 -2.90 16 24 H 0.05 0.41 6.46 -51.93 -0.34 0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.31 6.34 -51.93 -0.33 -0.02 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.34 2.44 8.96 -39.29 -0.35 2.09 16 32 H 0.35 2.57 9.08 -39.29 -0.36 2.21 16 33 H 0.40 6.24 6.92 -40.82 -0.28 5.95 16 34 H 0.10 2.59 6.48 -52.48 -0.34 2.25 16 35 H 0.12 3.41 6.18 -52.48 -0.32 3.09 16 36 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 37 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -32.02 311.75 -8.11 -40.12 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.24 Total: 13.42 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.09 Total: -19.18 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.48 Total: -40.83 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.02 -8.11 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087519740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.780 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds