Wall clock time and date at job start Mon Mar 30 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.08999 * 109.47261 * 305.00148 * 3 2 1 5 5 C 1.53006 * 109.47217 * 65.00199 * 3 2 1 6 6 N 1.46897 * 109.47229 * 184.99963 * 5 3 2 7 7 C 1.50702 * 109.47371 * 185.00084 * 3 2 1 8 8 O 1.21284 * 119.99558 * 0.02562 * 7 3 2 9 9 N 1.34770 * 120.00201 * 180.02562 * 7 3 2 10 10 C 1.39235 * 120.00022 * 174.86725 * 9 7 3 11 11 C 1.39480 * 119.83491 * 325.36007 * 10 9 7 12 12 C 1.36378 * 120.16999 * 179.75940 * 11 10 9 13 13 C 1.40865 * 119.82767 * 0.51534 * 12 11 10 14 14 C 1.41155 * 120.16040 * 179.71664 * 13 12 11 15 15 H 1.08003 * 119.99420 * 205.35332 * 14 13 12 16 16 C 1.39897 * 120.00301 * 25.36288 * 14 13 12 17 17 N 1.30873 * 120.00056 * 16.82967 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 196.83094 * 16 14 13 19 19 H 1.48501 * 109.46689 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46985 * 119.99423 * 18 16 14 21 21 H 1.48499 * 109.47336 * 239.99801 * 18 16 14 22 22 C 1.40865 * 119.67289 * 359.74186 * 13 12 11 23 23 C 1.36374 * 119.82904 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46854 * 299.99450 * 1 2 3 25 25 H 1.08997 * 109.47059 * 59.99757 * 1 2 3 26 26 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46854 * 240.00550 * 2 1 3 28 28 H 1.08997 * 109.47059 * 120.00242 * 2 1 3 29 29 H 1.08999 * 109.46847 * 305.00180 * 5 3 2 30 30 H 1.08999 * 109.47290 * 64.99790 * 5 3 2 31 31 H 1.00903 * 110.99976 * 56.04645 * 6 5 3 32 32 H 1.00899 * 110.99879 * 180.02562 * 6 5 3 33 33 H 0.96999 * 120.00071 * 354.86329 * 9 7 3 34 34 H 1.08005 * 119.91250 * 0.02562 * 11 10 9 35 35 H 1.08003 * 120.08106 * 180.25407 * 12 11 10 36 36 H 0.97004 * 120.00310 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.08831 * 179.97438 * 22 13 12 38 38 H 1.08002 * 119.91806 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 2.0194 3.5435 1.2580 7 6 3.5419 1.4444 -0.1239 8 8 4.1450 0.3952 -0.2047 9 7 4.2149 2.6118 -0.1448 10 6 5.6072 2.6128 -0.1513 11 6 6.3051 1.6284 0.5482 12 6 7.6689 1.6199 0.5424 13 6 8.3727 2.6151 -0.1636 14 6 9.7842 2.6166 -0.1694 15 1 10.3226 3.5385 -0.3325 16 6 10.4858 1.4238 0.0360 17 7 9.8742 0.2741 -0.0942 18 14 12.2957 1.4720 0.4959 19 1 12.7475 2.8842 0.5801 20 1 12.4898 0.8115 1.8117 21 1 13.0884 0.7589 -0.5377 22 6 7.6609 3.6092 -0.8633 23 6 6.2973 3.6012 -0.8531 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5563 2.0470 1.4402 30 1 2.1408 1.6420 2.1427 31 1 1.6146 4.0001 0.4544 32 1 1.7630 4.0176 2.1110 33 1 3.7293 3.4515 -0.1554 34 1 5.7640 0.8683 1.0924 35 1 8.2078 0.8546 1.0812 36 1 10.3606 -0.5530 0.0486 37 1 8.1938 4.3756 -1.4065 38 1 5.7501 4.3629 -1.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087519740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:11 Heat of formation + Delta-G solvation = -50.526105 kcal Electronic energy + Delta-G solvation = -19421.330292 eV Core-core repulsion = 16454.777255 eV Total energy + Delta-G solvation = -2966.553037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29773 -39.22270 -37.08134 -36.16181 -34.67218 -33.62490 -31.42924 -30.90664 -29.05461 -26.69701 -24.69391 -23.52924 -23.06395 -21.80612 -20.63380 -19.23608 -18.41175 -17.73770 -17.09343 -16.61378 -16.29874 -16.10405 -15.73319 -15.23491 -14.86382 -14.45015 -14.30015 -14.03450 -13.92690 -13.68282 -13.64844 -13.29994 -12.82311 -12.71338 -12.55946 -12.41953 -12.28516 -11.91599 -11.70528 -11.65221 -11.57898 -11.19153 -10.69576 -10.35238 -9.54939 -9.43292 -8.79834 -8.57770 -6.24375 0.84554 1.15318 1.38120 1.44896 1.54968 1.93342 2.22112 2.53562 2.79287 3.47821 3.76389 3.85277 3.95114 4.13011 4.33314 4.42448 4.45863 4.47722 4.57740 4.71893 4.85707 4.97997 5.00508 5.13058 5.19725 5.25117 5.27084 5.34267 5.46255 5.52351 5.70352 5.92349 6.11091 6.16520 6.23633 6.37239 6.65772 6.70040 6.92284 6.94831 7.05239 7.61535 8.36476 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036633 B = 0.004318 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.156612 B = 6483.415278 C = 6927.349943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.094 4.094 4 H 0.120 0.880 5 C 0.077 3.923 6 N -0.863 5.863 7 C 0.496 3.504 8 O -0.592 6.592 9 N -0.626 5.626 10 C 0.014 3.986 11 C -0.102 4.102 12 C -0.179 4.179 13 C 0.071 3.929 14 C -0.496 4.496 15 H 0.082 0.918 16 C 0.029 3.971 17 N -0.833 5.833 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.267 1.267 21 H -0.266 1.266 22 C -0.221 4.221 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.353 0.647 32 H 0.359 0.641 33 H 0.420 0.580 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.286 0.714 37 H 0.111 0.889 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 5.329 1.878 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.115 4.115 4 H 0.137 0.863 5 C -0.054 4.054 6 N -0.397 5.397 7 C 0.285 3.715 8 O -0.473 6.473 9 N -0.272 5.272 10 C -0.080 4.080 11 C -0.122 4.122 12 C -0.199 4.199 13 C 0.069 3.931 14 C -0.526 4.526 15 H 0.100 0.900 16 C -0.185 4.185 17 N -0.460 5.460 18 Si 0.807 3.193 19 H -0.176 1.176 20 H -0.192 1.192 21 H -0.191 1.191 22 C -0.241 4.241 23 C -0.124 4.124 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.342 4.110 1.783 16.945 hybrid contribution -0.039 -0.035 0.260 0.265 sum -16.381 4.074 2.042 17.003 Atomic orbital electron populations 1.21804 0.92576 1.02694 1.02991 1.21281 0.97449 0.93673 1.01976 1.21447 0.88945 0.99570 1.01555 0.86266 1.21695 0.99733 0.89123 0.94830 1.58509 1.68572 1.02743 1.09850 1.21481 0.91529 0.83048 0.75404 1.90692 1.71648 1.33454 1.51540 1.43039 1.03546 1.09743 1.70860 1.17366 0.83344 1.01050 1.06196 1.20423 0.94086 0.98199 0.99525 1.20876 0.92847 1.02228 1.03961 1.17981 0.94211 0.91424 0.89508 1.19837 0.91897 0.95542 1.45296 0.90014 1.26874 1.05841 0.94050 0.91725 1.69961 1.40671 0.99455 1.35872 0.85103 0.75687 0.79878 0.78645 1.17573 1.19184 1.19121 1.20834 0.93839 1.03419 1.06040 1.20410 0.94034 0.98926 0.99038 0.91036 0.91416 0.92056 0.93070 0.93078 0.90703 0.92731 0.83252 0.82628 0.73922 0.89616 0.88709 0.90392 0.87135 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.67 71.98 0.70 -1.35 16 2 C -0.11 -2.43 4.75 30.59 0.15 -2.29 16 3 C -0.09 -2.14 2.40 -11.54 -0.03 -2.16 16 4 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 5 C 0.08 1.35 6.03 86.31 0.52 1.87 16 6 N -0.86 -12.92 7.34 -186.72 -1.37 -14.29 16 7 C 0.50 18.17 6.87 87.66 0.60 18.77 16 8 O -0.59 -28.45 13.66 -3.04 -0.04 -28.49 16 9 N -0.63 -22.65 4.92 -303.11 -1.49 -24.14 16 10 C 0.01 0.68 6.27 38.57 0.24 0.92 16 11 C -0.10 -5.56 8.57 22.14 0.19 -5.37 16 12 C -0.18 -10.52 8.63 22.48 0.19 -10.33 16 13 C 0.07 4.08 5.57 -21.28 -0.12 3.97 16 14 C -0.50 -27.96 9.04 23.39 0.21 -27.75 16 15 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 16 C 0.03 1.54 5.15 85.24 0.44 1.98 16 17 N -0.83 -47.38 10.94 21.82 0.24 -47.14 16 18 Si 0.99 40.13 29.59 68.60 2.03 42.16 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 C -0.22 -11.13 9.74 22.48 0.22 -10.91 16 23 C -0.10 -4.65 9.90 22.14 0.22 -4.43 16 24 H 0.07 0.79 6.46 -2.39 -0.02 0.78 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.05 1.41 7.95 -2.39 -0.02 1.39 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 0.84 6.34 -2.39 -0.02 0.83 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.35 3.57 8.96 -89.69 -0.80 2.76 16 32 H 0.36 4.15 9.08 -89.69 -0.81 3.34 16 33 H 0.42 11.82 6.92 -92.71 -0.64 11.18 16 34 H 0.09 4.79 6.48 -2.91 -0.02 4.77 16 35 H 0.09 5.89 6.18 -2.91 -0.02 5.87 16 36 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 37 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -74.19 311.75 1.74 -72.45 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -1.16 Total: 36.52 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.53 Total: -37.08 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.62 Total: -85.57 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.04 Total: -28.49 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -74.19 1.74 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087519740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.927 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds