Wall clock time and date at job start Mon Mar 30 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46891 * 111.00234 * 2 1 4 4 C 1.52998 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47000 * 54.99855 * 4 3 2 6 6 C 1.53007 * 109.47209 * 295.00023 * 4 3 2 7 7 C 1.50700 * 109.47383 * 174.99954 * 4 3 2 8 8 O 1.21286 * 119.99983 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00040 * 179.97438 * 7 4 3 10 10 C 1.39237 * 120.00102 * 175.71356 * 9 7 4 11 11 C 1.39478 * 119.83479 * 215.01163 * 10 9 7 12 12 C 1.36373 * 120.16965 * 179.71756 * 11 10 9 13 13 C 1.40870 * 119.82665 * 0.57170 * 12 11 10 14 14 C 1.41152 * 120.16432 * 179.68194 * 13 12 11 15 15 H 1.08005 * 119.99899 * 214.80857 * 14 13 12 16 16 C 1.39901 * 120.00278 * 34.80296 * 14 13 12 17 17 N 1.30878 * 119.99882 * 355.55302 * 16 14 13 18 18 Si 1.86799 * 120.00254 * 175.54990 * 16 14 13 19 19 H 1.48504 * 109.47209 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47413 * 120.00089 * 18 16 14 21 21 H 1.48505 * 109.47172 * 240.00209 * 18 16 14 22 22 C 1.40869 * 119.67225 * 359.70251 * 13 12 11 23 23 C 1.36374 * 119.82991 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47175 * 59.99726 * 1 2 3 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46735 * 300.00308 * 1 2 3 27 27 H 1.00905 * 111.00135 * 123.95577 * 2 1 3 28 28 H 1.08997 * 109.47112 * 60.00057 * 3 2 1 29 29 H 1.09000 * 109.47358 * 300.00368 * 3 2 1 30 30 H 1.08997 * 109.47410 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.46660 * 59.99871 * 6 4 3 32 32 H 1.09000 * 109.47002 * 299.99831 * 6 4 3 33 33 H 0.96998 * 119.99922 * 355.71290 * 9 7 4 34 34 H 1.08005 * 119.91692 * 359.97438 * 11 10 9 35 35 H 1.07998 * 120.08798 * 180.25828 * 12 11 10 36 36 H 0.96998 * 119.99964 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.08441 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.91449 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8720 0.7317 -0.8427 6 6 4.0191 0.7072 1.3064 7 6 4.0649 2.7320 -0.1245 8 8 3.3015 3.6712 -0.2039 9 7 5.3960 2.9419 -0.1460 10 6 5.8952 4.2256 -0.3499 11 6 7.0755 4.4047 -1.0711 12 6 7.5675 5.6593 -1.2798 13 6 6.8868 6.7752 -0.7545 14 6 7.3933 8.0765 -0.9605 15 1 7.2814 8.8274 -0.1924 16 6 8.0404 8.3937 -2.1597 17 7 8.2534 7.4625 -3.0544 18 14 8.6002 10.1460 -2.4839 19 1 8.2436 11.0022 -1.3241 20 1 10.0720 10.1673 -2.6802 21 1 7.9305 10.6617 -3.7050 22 6 5.6984 6.5859 -0.0223 23 6 5.2151 5.3257 0.1726 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8307 -0.5262 0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 5.1087 0.6777 1.3058 31 1 3.6285 -0.3065 1.3960 32 1 3.6720 1.3061 2.1485 33 1 6.0063 2.1987 -0.0193 34 1 7.5991 3.5478 -1.4688 35 1 8.4794 5.7968 -1.8420 36 1 8.7024 7.6823 -3.8857 37 1 5.1714 7.4366 0.3838 38 1 4.3039 5.1790 0.7334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092133515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:23 Heat of formation + Delta-G solvation = -22.023449 kcal Electronic energy + Delta-G solvation = -19040.798600 eV Core-core repulsion = 16075.481531 eV Total energy + Delta-G solvation = -2965.317069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91760 -37.57592 -36.41744 -34.42324 -33.23173 -32.43170 -29.56993 -28.81701 -26.96330 -25.43108 -24.37100 -22.39634 -21.27182 -20.49654 -19.24339 -17.34863 -17.01083 -16.65942 -15.95515 -15.15371 -15.00610 -14.47131 -14.19126 -13.93155 -13.53631 -13.29555 -12.93674 -12.68036 -12.47445 -12.39694 -12.11781 -11.75310 -11.64493 -11.35087 -11.24353 -11.14767 -11.05016 -10.90866 -10.71953 -9.97160 -9.47110 -9.40894 -9.06918 -8.84397 -8.65680 -7.53737 -6.84895 -6.60824 -4.33286 2.56216 3.02614 3.09472 3.10964 3.16112 3.35239 3.61137 3.98953 4.24477 4.70493 4.71227 4.88202 4.95576 5.17725 5.27124 5.39541 5.55097 5.59391 5.67785 5.69534 5.76642 5.96049 6.06071 6.20541 6.45830 6.75616 6.77406 6.93522 7.08104 7.15123 7.22431 7.31014 7.64992 7.76246 7.88517 8.07641 8.28156 8.32876 8.63731 8.77357 8.93939 9.01520 10.30311 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.048268 B = 0.003599 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.954464 B = 7777.382388 C = 7944.251119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.697 5.697 3 C 0.077 3.923 4 C -0.109 4.109 5 H 0.104 0.896 6 C -0.146 4.146 7 C 0.504 3.496 8 O -0.533 6.533 9 N -0.650 5.650 10 C 0.004 3.996 11 C -0.121 4.121 12 C -0.141 4.141 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.205 4.205 23 C -0.086 4.086 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.338 0.662 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.395 0.605 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.277 0.723 37 H 0.095 0.905 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 -12.911 5.238 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.328 5.328 3 C -0.052 4.052 4 C -0.131 4.131 5 H 0.122 0.878 6 C -0.204 4.204 7 C 0.290 3.710 8 O -0.410 6.410 9 N -0.293 5.293 10 C -0.088 4.088 11 C -0.142 4.142 12 C -0.161 4.161 13 C 0.097 3.903 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.439 5.439 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.226 4.226 23 C -0.106 4.106 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.156 0.844 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.549 -12.342 4.252 14.604 hybrid contribution 0.345 0.633 0.564 0.915 sum -6.204 -11.709 4.816 14.099 Atomic orbital electron populations 1.22173 0.87652 1.01642 1.00705 1.60440 1.07913 1.14587 1.49848 1.21738 0.92511 0.88751 1.02243 1.21264 0.96589 0.94546 1.00688 0.87806 1.21811 1.01734 1.00792 0.96048 1.20455 0.82647 0.90653 0.77234 1.90682 1.57160 1.44035 1.49108 1.42999 1.06333 1.09376 1.70571 1.17294 0.99569 0.82992 1.08987 1.20324 0.96505 0.97452 0.99877 1.21193 1.01455 0.90249 1.03213 1.17730 0.89498 0.93469 0.89633 1.19530 1.31836 0.96697 1.01109 0.90589 1.25881 0.93547 0.99345 0.95809 1.69773 1.33113 1.33823 1.07236 0.86149 0.78603 0.82098 0.79127 1.18607 1.20011 1.19995 1.20809 0.98023 0.95151 1.08571 1.20393 0.98869 0.92027 0.99312 0.91539 0.91502 0.95981 0.84382 0.94362 0.89907 0.91761 0.91528 0.92216 0.77117 0.89082 0.85029 0.91218 0.88633 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.89 16 2 N -0.70 -7.02 6.85 -121.14 -0.83 -7.85 16 3 C 0.08 0.95 4.49 -3.83 -0.02 0.94 16 4 C -0.11 -1.33 2.94 -91.77 -0.27 -1.60 16 5 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 6 C -0.15 -1.36 8.86 37.16 0.33 -1.03 16 7 C 0.50 8.69 6.99 -10.99 -0.08 8.62 16 8 O -0.53 -11.46 13.34 5.55 0.07 -11.39 16 9 N -0.65 -11.37 5.22 -9.74 -0.05 -11.42 16 10 C 0.00 0.09 6.31 -83.57 -0.53 -0.44 16 11 C -0.12 -2.79 9.90 -39.79 -0.39 -3.18 16 12 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 13 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.40 9.02 -37.85 -0.34 -12.74 16 15 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 16 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 17 N -0.81 -21.28 10.60 55.55 0.59 -20.69 16 18 Si 0.92 19.15 29.56 -169.99 -5.03 14.13 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 23 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.34 2.81 7.07 -39.29 -0.28 2.53 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.19 7.96 -51.93 -0.41 0.78 16 30 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 31 H 0.07 0.48 6.68 -51.93 -0.35 0.14 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 5.41 8.11 -40.82 -0.33 5.08 16 34 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 38 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -30.37 314.79 -8.24 -38.61 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.33 Total: 10.73 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.40 Total: -16.86 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.29 Total: -39.96 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.37 -8.24 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092133515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.586 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds