Wall clock time and date at job start Mon Mar 30 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46891 * 111.00234 * 2 1 4 4 C 1.52998 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47000 * 54.99855 * 4 3 2 6 6 C 1.53007 * 109.47209 * 295.00023 * 4 3 2 7 7 C 1.50700 * 109.47383 * 174.99954 * 4 3 2 8 8 O 1.21286 * 119.99983 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00040 * 179.97438 * 7 4 3 10 10 C 1.39237 * 120.00102 * 175.71356 * 9 7 4 11 11 C 1.39478 * 119.83479 * 215.01163 * 10 9 7 12 12 C 1.36373 * 120.16965 * 179.71756 * 11 10 9 13 13 C 1.40870 * 119.82665 * 0.57170 * 12 11 10 14 14 C 1.41152 * 120.16432 * 179.68194 * 13 12 11 15 15 H 1.08005 * 119.99899 * 214.80857 * 14 13 12 16 16 C 1.39901 * 120.00278 * 34.80296 * 14 13 12 17 17 N 1.30878 * 119.99882 * 355.55302 * 16 14 13 18 18 Si 1.86799 * 120.00254 * 175.54990 * 16 14 13 19 19 H 1.48504 * 109.47209 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47413 * 120.00089 * 18 16 14 21 21 H 1.48505 * 109.47172 * 240.00209 * 18 16 14 22 22 C 1.40869 * 119.67225 * 359.70251 * 13 12 11 23 23 C 1.36374 * 119.82991 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47175 * 59.99726 * 1 2 3 25 25 H 1.08996 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46735 * 300.00308 * 1 2 3 27 27 H 1.00905 * 111.00135 * 123.95577 * 2 1 3 28 28 H 1.08997 * 109.47112 * 60.00057 * 3 2 1 29 29 H 1.09000 * 109.47358 * 300.00368 * 3 2 1 30 30 H 1.08997 * 109.47410 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.46660 * 59.99871 * 6 4 3 32 32 H 1.09000 * 109.47002 * 299.99831 * 6 4 3 33 33 H 0.96998 * 119.99922 * 355.71290 * 9 7 4 34 34 H 1.08005 * 119.91692 * 359.97438 * 11 10 9 35 35 H 1.07998 * 120.08798 * 180.25828 * 12 11 10 36 36 H 0.96998 * 119.99964 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.08441 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.91449 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8720 0.7317 -0.8427 6 6 4.0191 0.7072 1.3064 7 6 4.0649 2.7320 -0.1245 8 8 3.3015 3.6712 -0.2039 9 7 5.3960 2.9419 -0.1460 10 6 5.8952 4.2256 -0.3499 11 6 7.0755 4.4047 -1.0711 12 6 7.5675 5.6593 -1.2798 13 6 6.8868 6.7752 -0.7545 14 6 7.3933 8.0765 -0.9605 15 1 7.2814 8.8274 -0.1924 16 6 8.0404 8.3937 -2.1597 17 7 8.2534 7.4625 -3.0544 18 14 8.6002 10.1460 -2.4839 19 1 8.2436 11.0022 -1.3241 20 1 10.0720 10.1673 -2.6802 21 1 7.9305 10.6617 -3.7050 22 6 5.6984 6.5859 -0.0223 23 6 5.2151 5.3257 0.1726 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8307 -0.5262 0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 5.1087 0.6777 1.3058 31 1 3.6285 -0.3065 1.3960 32 1 3.6720 1.3061 2.1485 33 1 6.0063 2.1987 -0.0193 34 1 7.5991 3.5478 -1.4688 35 1 8.4794 5.7968 -1.8420 36 1 8.7024 7.6823 -3.8857 37 1 5.1714 7.4366 0.3838 38 1 4.3039 5.1790 0.7334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092133515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:22 Heat of formation + Delta-G solvation = -42.529530 kcal Electronic energy + Delta-G solvation = -19041.687810 eV Core-core repulsion = 16075.481531 eV Total energy + Delta-G solvation = -2966.206279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40159 -39.27512 -37.52452 -36.15211 -34.82639 -33.61438 -31.48548 -30.67110 -27.80439 -27.05614 -25.50358 -23.79911 -23.01801 -22.15839 -20.65093 -19.27183 -18.45850 -17.95422 -17.20185 -16.93122 -16.31555 -15.71199 -15.67005 -15.23171 -14.86688 -14.59175 -14.33505 -14.19059 -13.98704 -13.60020 -13.37854 -13.21877 -13.20417 -12.87116 -12.77418 -12.52429 -12.45059 -12.12880 -11.96324 -11.74327 -11.39187 -11.21633 -10.75468 -10.52467 -9.48719 -9.47087 -8.73501 -8.51084 -6.33874 0.78231 1.12574 1.39238 1.43552 1.54276 1.79556 2.23170 2.28941 2.79763 3.32880 3.64299 3.70334 3.93537 3.99314 4.35086 4.39415 4.49924 4.55747 4.56424 4.73530 4.78521 4.91759 4.93108 5.02841 5.03345 5.13994 5.14509 5.27532 5.34575 5.43501 5.68828 5.89657 5.90499 6.02056 6.13365 6.38293 6.46158 6.66515 6.72838 6.96095 6.99325 7.39278 8.41841 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.048268 B = 0.003599 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.954464 B = 7777.382388 C = 7944.251119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.694 5.694 3 C 0.083 3.917 4 C -0.094 4.094 5 H 0.123 0.877 6 C -0.142 4.142 7 C 0.501 3.499 8 O -0.578 6.578 9 N -0.642 5.642 10 C 0.020 3.980 11 C -0.119 4.119 12 C -0.159 4.159 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.072 0.928 16 C 0.027 3.973 17 N -0.841 5.841 18 Si 0.989 3.011 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.270 1.270 22 C -0.222 4.222 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.023 0.977 27 H 0.352 0.648 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.418 0.582 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.285 0.715 37 H 0.094 0.906 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -15.005 5.358 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.327 5.327 3 C -0.047 4.047 4 C -0.116 4.116 5 H 0.141 0.859 6 C -0.200 4.200 7 C 0.290 3.710 8 O -0.458 6.458 9 N -0.287 5.287 10 C -0.074 4.074 11 C -0.139 4.139 12 C -0.179 4.179 13 C 0.065 3.935 14 C -0.528 4.528 15 H 0.090 0.910 16 C -0.185 4.185 17 N -0.469 5.469 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.195 1.195 22 C -0.242 4.242 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.042 0.958 27 H 0.171 0.829 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.255 0.745 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.379 -14.503 4.395 16.442 hybrid contribution 0.182 1.123 0.563 1.269 sum -6.197 -13.380 4.958 15.557 Atomic orbital electron populations 1.22243 0.86848 1.02951 1.00376 1.60407 1.08726 1.12918 1.50601 1.21568 0.92784 0.89910 1.00474 1.21225 0.96119 0.91038 1.03191 0.85947 1.21841 1.02698 1.01831 0.93611 1.21442 0.81915 0.92386 0.75271 1.90670 1.58191 1.46147 1.50799 1.42932 1.07159 1.08191 1.70388 1.17359 0.98603 0.84672 1.06719 1.20581 0.96649 0.97544 0.99139 1.21186 1.01450 0.91308 1.03934 1.18039 0.90366 0.94297 0.90837 1.19744 1.33933 0.96949 1.02223 0.91020 1.26742 0.93061 1.03707 0.94957 1.69830 1.33526 1.35812 1.07745 0.85050 0.78599 0.76491 0.78849 1.18464 1.18639 1.19452 1.20931 0.98143 0.96000 1.09092 1.20509 0.99103 0.92331 0.99876 0.92451 0.89336 0.95813 0.82858 0.95570 0.92515 0.90376 0.88637 0.93072 0.74465 0.85622 0.86264 0.90467 0.88729 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.70 127.69 1.37 1.76 16 2 N -0.69 -12.20 6.85 -537.17 -3.68 -15.88 16 3 C 0.08 1.94 4.49 86.30 0.39 2.33 16 4 C -0.09 -2.05 2.94 -11.54 -0.03 -2.08 16 5 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 6 C -0.14 -2.14 8.86 71.98 0.64 -1.50 16 7 C 0.50 16.59 6.99 87.66 0.61 17.21 16 8 O -0.58 -24.96 13.34 -3.05 -0.04 -25.00 16 9 N -0.64 -21.12 5.22 -303.11 -1.58 -22.70 16 10 C 0.02 0.88 6.31 38.57 0.24 1.13 16 11 C -0.12 -5.37 9.90 22.13 0.22 -5.15 16 12 C -0.16 -8.37 8.62 22.48 0.19 -8.18 16 13 C 0.07 3.75 5.55 -21.28 -0.12 3.63 16 14 C -0.50 -27.76 9.02 23.39 0.21 -27.55 16 15 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 16 C 0.03 1.40 5.42 85.24 0.46 1.87 16 17 N -0.84 -44.82 10.60 21.82 0.23 -44.59 16 18 Si 0.99 39.61 29.56 68.60 2.03 41.64 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 C -0.22 -11.79 9.74 22.48 0.22 -11.57 16 23 C -0.10 -4.83 8.61 22.14 0.19 -4.64 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.02 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.35 4.58 7.07 -89.69 -0.63 3.94 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 30 H 0.08 0.99 7.47 -2.39 -0.02 0.97 16 31 H 0.09 0.93 6.68 -2.38 -0.02 0.92 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.42 10.03 8.11 -92.71 -0.75 9.27 16 34 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.12 6.53 6.13 -2.91 -0.02 6.51 16 36 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 37 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.11 5.19 6.22 -2.91 -0.02 5.17 16 Total: -1.00 -68.19 314.79 1.23 -66.95 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.31 Total: 32.34 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.59 Total: -32.75 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -5.03 Total: -83.18 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -68.19 1.23 -66.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092133515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.424 kcal (2) G-P(sol) polarization free energy of solvation -68.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds